Wall clock time and date at job start Tue Mar 31 2020 07:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47405 * 2 1 4 4 C 1.50700 * 109.47029 * 239.99579 * 2 1 3 5 5 O 1.21297 * 119.99695 * 255.60054 * 4 2 1 6 6 N 1.34770 * 120.00355 * 75.60120 * 4 2 1 7 7 C 1.46496 * 120.00436 * 174.41626 * 6 4 2 8 8 C 1.37104 * 119.99686 * 354.41752 * 6 4 2 9 9 H 1.07994 * 120.00109 * 3.94742 * 8 6 4 10 10 C 1.38952 * 120.00039 * 183.93545 * 8 6 4 11 11 N 1.31413 * 119.99736 * 8.06257 * 10 8 6 12 12 Si 1.86801 * 120.00123 * 188.05403 * 10 8 6 13 13 H 1.48506 * 109.46992 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.46921 * 120.00771 * 12 10 8 15 15 H 1.48499 * 109.47151 * 240.00518 * 12 10 8 16 16 C 1.52998 * 109.46829 * 119.99840 * 2 1 3 17 17 H 1.09004 * 109.72205 * 301.16632 * 16 2 1 18 18 O 1.43022 * 109.69519 * 61.72466 * 16 2 1 19 19 C 1.43039 * 114.24782 * 171.78410 * 18 16 2 20 20 C 1.53435 * 109.08027 * 288.73704 * 19 18 16 21 21 C 1.51403 * 107.90509 * 47.45665 * 20 19 18 22 22 S 1.75508 * 126.27573 * 164.80375 * 21 20 19 23 23 C 1.75810 * 91.03684 * 180.02562 * 22 21 20 24 24 C 1.33071 * 109.61392 * 359.68269 * 23 22 21 25 25 C 1.34881 * 123.68113 * 344.49556 * 21 20 19 26 26 H 1.08998 * 109.47379 * 184.12762 * 1 2 3 27 27 H 1.09002 * 109.47084 * 304.13127 * 1 2 3 28 28 H 1.09001 * 109.46874 * 64.12438 * 1 2 3 29 29 H 1.09004 * 109.47047 * 354.38492 * 7 6 4 30 30 H 1.09009 * 109.46965 * 114.38279 * 7 6 4 31 31 H 1.09000 * 109.47756 * 234.37812 * 7 6 4 32 32 H 0.97003 * 119.99633 * 179.97438 * 11 10 8 33 33 H 1.09003 * 109.53518 * 168.86178 * 19 18 16 34 34 H 1.08998 * 109.60324 * 48.65484 * 19 18 16 35 35 H 1.09004 * 109.77416 * 287.85554 * 20 19 18 36 36 H 1.08994 * 109.77493 * 167.05605 * 20 19 18 37 37 H 1.08003 * 125.19546 * 179.88797 * 23 22 21 38 38 H 1.07998 * 122.18508 * 180.25503 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.4807 -1.8340 -1.1413 6 7 1.9833 -0.0977 -2.4297 7 6 2.5819 -0.7370 -3.6041 8 6 1.3732 1.1242 -2.5507 9 1 0.9884 1.6247 -1.6745 10 6 1.2503 1.7186 -3.8006 11 7 1.5727 1.0461 -4.8826 12 14 0.6264 3.4736 -3.9429 13 1 0.3347 4.0067 -2.5879 14 1 1.6620 4.3158 -4.5935 15 1 -0.6131 3.4936 -4.7605 16 6 2.0399 -0.7212 1.2493 17 1 1.6618 -0.2227 2.1419 18 8 1.5992 -2.0817 1.2340 19 6 2.1722 -2.8964 2.2607 20 6 3.6520 -3.1423 1.9383 21 6 4.2766 -1.8118 1.5748 22 16 5.9938 -1.4604 1.4861 23 6 5.6620 0.2039 1.0270 24 6 4.3468 0.3954 0.9611 25 6 3.5627 -0.7110 1.2620 26 1 -0.3634 -1.0250 0.0740 27 1 -0.3633 0.5766 0.8507 28 1 -0.3633 0.4485 -0.9247 29 1 3.1020 -1.6447 -3.2980 30 1 1.7986 -0.9903 -4.3186 31 1 3.2903 -0.0516 -4.0695 32 1 1.4865 1.4610 -5.7552 33 1 1.6458 -3.8498 2.3058 34 1 2.0880 -2.3876 3.2209 35 1 3.7369 -3.8314 1.0980 36 1 4.1550 -3.5597 2.8106 37 1 6.4113 0.9553 0.8256 38 1 3.9171 1.3488 0.6914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293199476.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:36 Heat of formation + Delta-G solvation = -45.541565 kcal Electronic energy + Delta-G solvation = -22857.420557 eV Core-core repulsion = 19598.753490 eV Total energy + Delta-G solvation = -3258.667066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27536 -39.70995 -37.33823 -36.57199 -34.90515 -33.25221 -32.68006 -29.89696 -28.27086 -26.86152 -26.37753 -24.91153 -23.17939 -22.66269 -20.72576 -19.56148 -18.54678 -18.34066 -18.03417 -17.03317 -16.23896 -16.11822 -15.80285 -15.55602 -15.49538 -15.48018 -14.50262 -14.41545 -14.19877 -14.07136 -13.41223 -13.36071 -13.27464 -13.04497 -12.86025 -12.74691 -12.72118 -12.41586 -12.30887 -12.11104 -11.99103 -11.95206 -11.78903 -11.40380 -10.98904 -10.42776 -9.97325 -9.77076 -9.41434 -9.16737 -8.13611 -5.77966 0.10613 0.75304 1.06941 1.44711 1.49003 1.61547 1.77788 2.20872 2.33465 2.97469 3.09301 3.27018 3.77212 3.82389 3.98711 4.19820 4.22678 4.30615 4.43468 4.47273 4.50143 4.57678 4.71222 4.77199 4.87324 4.90541 5.03831 5.11835 5.15231 5.17771 5.25471 5.40866 5.45732 5.46865 5.55078 5.62581 5.89432 6.44107 6.52919 7.22373 7.76765 8.16986 8.82886 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019967 B = 0.005642 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.954061 B = 4962.015856 C = 5368.294017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 H 0.102 0.898 4 C 0.461 3.539 5 O -0.611 6.611 6 N -0.474 5.474 7 C 0.146 3.854 8 C -0.337 4.337 9 H 0.120 0.880 10 C -0.020 4.020 11 N -0.913 5.913 12 Si 0.990 3.010 13 H -0.249 1.249 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.176 3.824 17 H 0.096 0.904 18 O -0.374 6.374 19 C 0.063 3.937 20 C -0.075 4.075 21 C -0.181 4.181 22 S 0.097 5.903 23 C -0.222 4.222 24 C -0.134 4.134 25 C -0.141 4.141 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.023 0.977 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.264 0.736 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.184 0.816 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.033 -0.373 15.084 15.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 H 0.120 0.880 4 C 0.250 3.750 5 O -0.496 6.496 6 N -0.194 5.194 7 C 0.003 3.997 8 C -0.464 4.464 9 H 0.138 0.862 10 C -0.219 4.219 11 N -0.554 5.554 12 Si 0.814 3.186 13 H -0.172 1.172 14 H -0.210 1.210 15 H -0.210 1.210 16 C 0.116 3.884 17 H 0.113 0.887 18 O -0.292 6.292 19 C -0.015 4.015 20 C -0.114 4.114 21 C -0.298 4.298 22 S 0.363 5.637 23 C -0.357 4.357 24 C -0.164 4.164 25 C -0.153 4.153 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.202 0.798 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.510 -1.780 14.993 15.757 hybrid contribution -1.029 1.602 -1.212 2.257 sum 3.481 -0.178 13.781 14.215 Atomic orbital electron populations 1.21663 0.91963 1.02209 1.03224 1.21162 0.98512 0.99251 0.91118 0.88011 1.20466 0.82712 0.86689 0.85090 1.90519 1.52339 1.20338 1.86450 1.43946 1.49797 1.18701 1.06929 1.21083 0.97156 0.94230 0.87279 1.20235 1.35764 0.94799 0.95612 0.86237 1.26191 0.97515 1.03569 0.94630 1.70352 1.48925 1.37596 0.98564 0.84898 0.77285 0.77158 0.79273 1.17171 1.20989 1.20965 1.20842 0.87076 0.83717 0.96807 0.88709 1.88102 1.66441 1.20418 1.54285 1.22776 0.91754 0.96347 0.90644 1.20958 0.97036 0.91311 1.02119 1.24912 0.96131 1.00040 1.08750 1.83598 1.04791 1.06583 1.68743 1.25617 0.99819 0.99782 1.10467 1.20073 0.93348 1.00143 1.02815 1.20285 0.97931 0.93596 1.03470 0.93238 0.89279 0.92227 0.95872 0.93382 0.93917 0.92588 0.86846 0.91109 0.91439 0.87414 0.79832 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 8.76 71.98 0.63 -3.95 16 2 C -0.08 -3.03 1.50 -11.54 -0.02 -3.04 16 3 H 0.10 3.69 6.34 -2.39 -0.02 3.68 16 4 C 0.46 22.61 6.35 87.66 0.56 23.17 16 5 O -0.61 -33.09 13.69 17.17 0.24 -32.85 16 6 N -0.47 -24.96 3.03 -658.89 -1.99 -26.95 16 7 C 0.15 7.96 8.85 127.77 1.13 9.09 16 8 C -0.34 -16.93 8.35 84.04 0.70 -16.23 16 9 H 0.12 5.41 5.17 -2.91 -0.02 5.40 16 10 C -0.02 -1.00 5.40 84.93 0.46 -0.54 16 11 N -0.91 -49.45 9.57 21.66 0.21 -49.24 16 12 Si 0.99 39.38 29.56 68.60 2.03 41.41 16 13 H -0.25 -8.98 7.11 99.48 0.71 -8.28 16 14 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 15 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 16 C 0.18 5.96 2.62 30.36 0.08 6.04 16 17 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 18 O -0.37 -13.47 8.16 -128.73 -1.05 -14.52 16 19 C 0.06 1.66 6.83 72.13 0.49 2.15 16 20 C -0.07 -2.08 6.55 30.22 0.20 -1.89 16 21 C -0.18 -5.91 6.44 25.14 0.16 -5.75 16 22 S 0.10 2.79 23.32 -56.49 -1.32 1.48 16 23 C -0.22 -6.51 11.21 66.66 0.75 -5.76 16 24 C -0.13 -4.38 9.46 21.27 0.20 -4.18 16 25 C -0.14 -4.87 4.16 -19.97 -0.08 -4.95 16 26 H 0.05 1.80 7.62 -2.39 -0.02 1.78 16 27 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.06 2.26 6.20 -2.39 -0.01 2.24 16 29 H 0.02 1.24 6.95 -2.38 -0.02 1.23 16 30 H 0.05 2.73 6.94 -2.38 -0.02 2.71 16 31 H 0.04 2.36 7.20 -2.39 -0.02 2.34 16 32 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 33 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.07 1.51 8.09 -2.39 -0.02 1.49 16 35 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.18 4.30 8.06 -2.91 -0.02 4.28 16 38 H 0.14 4.36 7.35 -2.91 -0.02 4.34 16 Total: -1.00 -66.49 314.08 4.44 -62.05 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 1.08 Total: 24.47 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 5.26 Total: -5.84 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -1.79 Total: -76.19 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -0.82 Total: -47.37 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.32 Total: 1.48 kcal Total: -66.49 4.44 -62.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293199476.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.504 kcal (2) G-P(sol) polarization free energy of solvation -66.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds