Wall clock time and date at job start Tue Mar 31 2020 07:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47402 * 2 1 4 4 C 1.50697 * 109.46852 * 120.00090 * 2 1 3 5 5 O 1.21296 * 120.00232 * 120.00215 * 4 2 1 6 6 N 1.34779 * 120.00288 * 299.99839 * 4 2 1 7 7 C 1.46507 * 119.99727 * 359.72747 * 6 4 2 8 8 C 1.37092 * 120.00464 * 180.02562 * 6 4 2 9 9 H 1.07998 * 120.00435 * 23.89616 * 8 6 4 10 10 C 1.38951 * 119.99885 * 203.89942 * 8 6 4 11 11 N 1.31414 * 120.00408 * 10.37140 * 10 8 6 12 12 Si 1.86804 * 119.99751 * 190.36857 * 10 8 6 13 13 H 1.48493 * 109.47300 * 60.00017 * 12 10 8 14 14 H 1.48504 * 109.46656 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47210 * 299.99513 * 12 10 8 16 16 C 1.52997 * 109.47210 * 239.99657 * 2 1 3 17 17 H 1.09006 * 109.68511 * 54.91070 * 16 2 1 18 18 O 1.43021 * 109.69399 * 294.37089 * 16 2 1 19 19 C 1.43074 * 114.22770 * 188.25463 * 18 16 2 20 20 C 1.53430 * 109.10606 * 71.21996 * 19 18 16 21 21 C 1.51412 * 107.90507 * 312.53719 * 20 19 18 22 22 S 1.75507 * 126.27401 * 195.52924 * 21 20 19 23 23 C 1.75815 * 91.03376 * 179.97438 * 22 21 20 24 24 C 1.33071 * 109.61107 * 0.02562 * 23 22 21 25 25 C 1.34872 * 123.67724 * 15.50967 * 21 20 19 26 26 H 1.09011 * 109.47110 * 67.71157 * 1 2 3 27 27 H 1.09001 * 109.47851 * 187.70868 * 1 2 3 28 28 H 1.09000 * 109.47542 * 307.70866 * 1 2 3 29 29 H 1.08995 * 109.47267 * 92.41413 * 7 6 4 30 30 H 1.09004 * 109.47329 * 212.41904 * 7 6 4 31 31 H 1.09008 * 109.46860 * 332.41801 * 7 6 4 32 32 H 0.96995 * 120.00178 * 179.97438 * 11 10 8 33 33 H 1.08993 * 109.52459 * 311.33081 * 19 18 16 34 34 H 1.08999 * 109.58803 * 191.14414 * 19 18 16 35 35 H 1.08999 * 109.77773 * 192.93770 * 20 19 18 36 36 H 1.09005 * 109.82241 * 72.16521 * 20 19 18 37 37 H 1.07996 * 125.19118 * 179.97438 * 23 22 21 38 38 H 1.08005 * 122.17826 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2304 5 8 2.7296 -1.6966 1.1192 6 7 1.7066 -0.2500 2.4546 7 6 0.8693 0.9447 2.5890 8 6 2.1640 -0.8960 3.5740 9 1 3.0566 -1.5015 3.5212 10 6 1.4789 -0.7716 4.7765 11 7 0.2914 -0.2093 4.8012 12 14 2.2461 -1.4036 6.3581 13 1 3.5299 -0.6983 6.6019 14 1 1.3201 -1.1534 7.4918 15 1 2.4977 -2.8622 6.2378 16 6 2.0400 -0.7213 -1.2492 17 1 1.6061 -0.2655 -2.1392 18 8 1.6768 -2.1034 -1.1897 19 6 2.2631 -2.9092 -2.2164 20 6 3.7638 -3.0644 -1.9374 21 6 4.3233 -1.6927 -1.6241 22 16 6.0195 -1.2422 -1.6074 23 6 5.6091 0.4102 -1.1689 24 6 4.2879 0.5292 -1.0632 25 6 3.5586 -0.6264 -1.3124 26 1 -0.3634 0.3898 -0.9510 27 1 -0.3635 -1.0183 0.1378 28 1 -0.3634 0.6285 0.8130 29 1 -0.1770 0.6486 2.6634 30 1 1.1571 1.4909 3.4873 31 1 1.0050 1.5835 1.7162 32 1 -0.1869 -0.1229 5.6405 33 1 2.1201 -2.4277 -3.1836 34 1 1.7904 -3.8913 -2.2246 35 1 4.2619 -3.4738 -2.8162 36 1 3.9148 -3.7276 -1.0856 37 1 6.3206 1.2067 -1.0089 38 1 3.8137 1.4635 -0.8009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293199481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:39 Heat of formation + Delta-G solvation = -48.185157 kcal Electronic energy + Delta-G solvation = -22779.869564 eV Core-core repulsion = 19521.087863 eV Total energy + Delta-G solvation = -3258.781701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.28628 -39.68921 -37.33718 -36.46044 -35.06133 -33.43511 -32.60549 -29.86365 -28.06025 -26.90372 -26.41012 -24.91839 -23.59633 -22.67119 -20.49228 -19.19081 -18.74526 -18.31449 -18.09800 -17.12701 -16.37115 -16.20591 -15.84739 -15.58683 -15.50503 -15.45162 -14.61465 -14.38007 -14.21721 -14.03505 -13.61935 -13.36733 -13.08022 -13.02129 -12.89649 -12.78192 -12.66303 -12.52069 -12.41184 -12.16873 -12.15399 -11.97735 -11.74388 -11.41069 -10.92334 -10.43119 -9.99699 -9.52865 -9.39570 -9.13428 -8.24602 -5.89122 0.12907 0.76833 1.09395 1.38256 1.38767 1.48801 1.79934 2.23405 2.32152 2.93875 3.16899 3.21382 3.75467 3.81316 3.93175 4.08313 4.19766 4.27592 4.38506 4.42509 4.42883 4.49814 4.65614 4.71736 4.82981 4.87111 4.98701 4.99525 5.07742 5.09293 5.23110 5.39814 5.48173 5.49563 5.51196 5.61456 6.19120 6.42587 6.62650 7.30788 7.63808 8.24682 8.77293 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.018237 B = 0.005566 C = 0.005086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.975683 B = 5028.937775 C = 5503.812966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 H 0.114 0.886 4 C 0.457 3.543 5 O -0.597 6.597 6 N -0.476 5.476 7 C 0.127 3.873 8 C -0.333 4.333 9 H 0.063 0.937 10 C -0.005 4.005 11 N -0.901 5.901 12 Si 0.981 3.019 13 H -0.270 1.270 14 H -0.269 1.269 15 H -0.281 1.281 16 C 0.177 3.823 17 H 0.101 0.899 18 O -0.381 6.381 19 C 0.065 3.935 20 C -0.076 4.076 21 C -0.183 4.183 22 S 0.089 5.911 23 C -0.220 4.220 24 C -0.134 4.134 25 C -0.135 4.135 26 H 0.094 0.906 27 H 0.036 0.964 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.270 0.730 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.062 0.938 37 H 0.187 0.813 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 3.372 -15.312 16.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 H 0.132 0.868 4 C 0.246 3.754 5 O -0.481 6.481 6 N -0.197 5.197 7 C -0.016 4.016 8 C -0.462 4.462 9 H 0.081 0.919 10 C -0.206 4.206 11 N -0.541 5.541 12 Si 0.806 3.194 13 H -0.195 1.195 14 H -0.194 1.194 15 H -0.207 1.207 16 C 0.117 3.883 17 H 0.118 0.882 18 O -0.300 6.300 19 C -0.013 4.013 20 C -0.115 4.115 21 C -0.300 4.300 22 S 0.354 5.646 23 C -0.355 4.355 24 C -0.164 4.164 25 C -0.147 4.147 26 H 0.113 0.887 27 H 0.055 0.945 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.204 0.796 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.165 2.126 -15.324 16.310 hybrid contribution -0.685 0.379 1.513 1.703 sum 4.480 2.505 -13.811 14.734 Atomic orbital electron populations 1.21877 0.91778 1.02034 1.04023 1.21334 0.98498 0.99727 0.91405 0.86801 1.20736 0.83943 0.85915 0.84772 1.90505 1.42045 1.28967 1.86584 1.43747 1.46399 1.25097 1.04447 1.21489 0.94582 0.86191 0.99321 1.19433 1.09048 1.29558 0.88134 0.91945 1.25965 0.95332 0.97412 1.01857 1.70043 1.11715 1.44470 1.27884 0.85184 0.78282 0.78320 0.77640 1.19506 1.19376 1.20692 1.20871 0.87790 0.82965 0.96721 0.88185 1.88101 1.69408 1.19030 1.53418 1.22756 0.91188 0.96568 0.90822 1.20933 0.97529 0.90912 1.02133 1.24840 0.95998 1.00042 1.09106 1.83648 1.05871 1.05566 1.69485 1.25625 0.99503 0.99887 1.10480 1.20082 0.93688 0.99569 1.03066 1.20270 0.97939 0.93465 1.03071 0.88750 0.94502 0.91030 0.93460 0.93882 0.91516 0.92065 0.90763 0.87207 0.87482 0.91972 0.79574 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 8.57 71.98 0.62 -3.82 16 2 C -0.09 -3.15 1.57 -11.54 -0.02 -3.17 16 3 H 0.11 3.47 6.34 -2.39 -0.02 3.46 16 4 C 0.46 22.64 6.61 87.66 0.58 23.21 16 5 O -0.60 -34.02 13.78 16.73 0.23 -33.79 16 6 N -0.48 -25.19 3.01 -658.87 -1.99 -27.18 16 7 C 0.13 5.71 7.04 127.77 0.90 6.61 16 8 C -0.33 -19.73 9.26 84.04 0.78 -18.95 16 9 H 0.06 3.98 7.43 -2.91 -0.02 3.96 16 10 C -0.01 -0.28 5.13 84.93 0.44 0.16 16 11 N -0.90 -49.45 10.66 21.66 0.23 -49.22 16 12 Si 0.98 44.60 29.57 68.60 2.03 46.63 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 15 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 16 C 0.18 5.80 2.57 30.36 0.08 5.87 16 17 H 0.10 2.55 8.14 -2.38 -0.02 2.53 16 18 O -0.38 -14.08 8.61 -129.17 -1.11 -15.19 16 19 C 0.06 1.78 6.83 72.13 0.49 2.27 16 20 C -0.08 -2.21 6.55 30.22 0.20 -2.01 16 21 C -0.18 -6.04 6.40 25.14 0.16 -5.88 16 22 S 0.09 2.56 23.32 -56.49 -1.32 1.25 16 23 C -0.22 -6.14 11.21 66.66 0.75 -5.39 16 24 C -0.13 -4.09 9.44 21.27 0.20 -3.89 16 25 C -0.14 -4.57 4.02 -19.97 -0.08 -4.65 16 26 H 0.09 2.18 8.13 -2.38 -0.02 2.16 16 27 H 0.04 1.36 8.04 -2.39 -0.02 1.34 16 28 H 0.07 2.29 4.83 -2.39 -0.01 2.28 16 29 H 0.05 2.21 6.63 -2.39 -0.02 2.19 16 30 H 0.04 2.06 7.15 -2.39 -0.02 2.04 16 31 H 0.07 2.36 5.75 -2.38 -0.01 2.35 16 32 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 33 H 0.07 1.61 8.08 -2.39 -0.02 1.59 16 34 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.19 3.99 8.06 -2.91 -0.02 3.97 16 38 H 0.15 3.92 7.28 -2.91 -0.02 3.90 16 Total: -1.00 -73.69 314.06 4.24 -69.45 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 1.08 Total: 17.68 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 5.09 Total: -9.63 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -1.76 Total: -76.40 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -0.88 Total: -48.98 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.32 Total: 1.25 kcal Total: -73.69 4.24 -69.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293199481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.265 kcal (2) G-P(sol) polarization free energy of solvation -73.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds