Wall clock time and date at job start Tue Mar 31 2020 07:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47053 * 2 1 4 4 O 1.42903 * 109.46845 * 240.00165 * 2 1 3 5 5 C 1.52991 * 109.47160 * 119.99934 * 2 1 3 6 6 S 1.81405 * 109.47100 * 184.99795 * 5 2 1 7 7 C 1.81399 * 102.99765 * 180.02562 * 6 5 2 8 8 C 1.50703 * 109.46822 * 180.02562 * 7 6 5 9 9 O 1.21286 * 120.00205 * 5.02712 * 8 7 6 10 10 N 1.34775 * 120.00035 * 185.02901 * 8 7 6 11 11 C 1.37135 * 120.00110 * 3.75975 * 10 8 7 12 12 H 1.08005 * 119.99607 * 308.19528 * 11 10 8 13 13 C 1.38888 * 120.00170 * 128.19863 * 11 10 8 14 14 N 1.31430 * 119.99809 * 173.09610 * 13 11 10 15 15 Si 1.86798 * 120.00090 * 353.09023 * 13 11 10 16 16 H 1.48506 * 109.47000 * 95.34480 * 15 13 11 17 17 H 1.48497 * 109.47219 * 215.34653 * 15 13 11 18 18 H 1.48497 * 109.46974 * 335.34563 * 15 13 11 19 19 C 1.39796 * 119.99956 * 183.76094 * 10 8 7 20 20 C 1.38956 * 120.07625 * 171.69901 * 19 10 8 21 21 C 1.38080 * 119.92097 * 180.23217 * 20 19 10 22 22 C 1.38309 * 120.07830 * 359.46276 * 21 20 19 23 23 C 1.38316 * 120.15549 * 0.55677 * 22 21 20 24 24 C 1.38089 * 120.07234 * 359.70022 * 23 22 21 25 25 H 1.09008 * 109.46912 * 299.99837 * 1 2 3 26 26 H 1.08993 * 109.47457 * 59.99741 * 1 2 3 27 27 H 1.09001 * 109.47053 * 179.97438 * 1 2 3 28 28 H 0.96700 * 113.99827 * 59.99469 * 4 2 1 29 29 H 1.09006 * 109.47105 * 65.00309 * 5 2 1 30 30 H 1.08996 * 109.47783 * 305.00292 * 5 2 1 31 31 H 1.08999 * 109.47184 * 60.00799 * 7 6 5 32 32 H 1.08994 * 109.47708 * 299.99925 * 7 6 5 33 33 H 0.96996 * 119.99366 * 179.97438 * 14 13 11 34 34 H 1.08003 * 120.04226 * 359.94517 * 20 19 10 35 35 H 1.07999 * 119.96536 * 179.74536 * 21 20 19 36 36 H 1.07995 * 119.92641 * 180.25419 * 22 21 20 37 37 H 1.07995 * 119.96489 * 179.72405 * 23 22 21 38 38 H 1.08001 * 120.03633 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 16 3.8479 -0.5932 1.3255 7 6 4.2567 -1.4929 2.8467 8 6 5.7493 -1.4760 3.0546 9 8 6.4585 -0.8365 2.3068 10 7 6.2960 -2.1714 4.0714 11 6 5.5036 -2.9558 4.8698 12 1 4.6164 -2.5406 5.3248 13 6 5.8420 -4.2842 5.0934 14 7 5.1626 -4.9979 5.9631 15 14 7.2625 -5.0564 4.1579 16 1 8.4965 -4.9804 4.9806 17 1 6.9486 -6.4782 3.8664 18 1 7.4717 -4.3243 2.8830 19 6 7.6708 -2.0931 4.3122 20 6 8.2111 -2.6668 5.4567 21 6 9.5688 -2.5834 5.6938 22 6 10.3923 -1.9394 4.7882 23 6 9.8579 -1.3669 3.6481 24 6 8.5003 -1.4419 3.4073 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7209 -0.2701 -1.9980 29 1 1.7517 -1.7715 1.2055 30 1 1.6054 -0.2618 2.1369 31 1 3.9130 -2.5239 2.7626 32 1 3.7668 -1.0146 3.6947 33 1 5.3988 -5.9257 6.1190 34 1 7.5692 -3.1733 6.1623 35 1 9.9890 -3.0254 6.5851 36 1 11.4545 -1.8792 4.9740 37 1 10.5032 -0.8609 2.9453 38 1 8.0837 -0.9951 2.5168 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298188298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:09 Heat of formation + Delta-G solvation = -34.954995 kcal Electronic energy + Delta-G solvation = -21320.798654 eV Core-core repulsion = 18062.590656 eV Total energy + Delta-G solvation = -3258.207998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.08543 -37.65631 -37.52103 -35.19786 -32.29146 -32.12584 -30.44709 -30.09380 -28.10649 -27.42241 -25.29310 -22.21256 -21.68467 -21.30252 -19.49014 -18.19978 -17.55856 -16.55754 -16.09360 -15.88564 -15.42656 -15.03734 -14.76914 -14.14070 -14.10711 -13.71799 -13.48486 -13.26351 -13.05314 -12.82695 -12.66519 -12.58421 -12.48668 -12.22292 -11.78366 -11.74094 -11.36922 -11.02308 -10.94511 -10.74670 -10.32358 -10.18488 -10.14371 -9.59066 -9.45929 -9.00321 -8.49947 -8.05332 -7.24573 -7.10638 -6.63905 -4.55909 1.83676 2.01632 2.16007 2.92144 3.11842 3.21610 3.31807 3.45123 4.03516 4.07888 4.13281 4.54252 4.66640 4.82654 4.91912 4.99753 5.27909 5.41661 5.45757 5.60730 5.65440 5.67392 5.72244 5.74449 5.87769 5.93067 6.00332 6.28251 6.37800 6.53462 6.79041 7.14266 7.21618 7.28079 7.33626 7.56200 7.68109 7.89084 8.11824 8.67974 8.98825 9.27151 10.39049 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.004552 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.809032 B = 6149.036756 C = 7025.013003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.120 3.880 3 H 0.064 0.936 4 O -0.555 6.555 5 C -0.104 4.104 6 S -0.186 6.186 7 C -0.099 4.099 8 C 0.514 3.486 9 O -0.540 6.540 10 N -0.403 5.403 11 C -0.372 4.372 12 H 0.109 0.891 13 C 0.085 3.915 14 N -0.855 5.855 15 Si 0.868 3.132 16 H -0.251 1.251 17 H -0.287 1.287 18 H -0.259 1.259 19 C 0.156 3.844 20 C -0.153 4.153 21 C -0.107 4.107 22 C -0.169 4.169 23 C -0.110 4.110 24 C -0.183 4.183 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.375 0.625 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.280 0.720 34 H 0.140 0.860 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.726 6.594 -6.508 10.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.060 3.940 3 H 0.081 0.919 4 O -0.360 6.360 5 C -0.253 4.253 6 S 0.040 5.960 7 C -0.250 4.250 8 C 0.304 3.696 9 O -0.423 6.423 10 N -0.113 5.113 11 C -0.498 4.498 12 H 0.127 0.873 13 C -0.125 4.125 14 N -0.488 5.488 15 Si 0.693 3.307 16 H -0.175 1.175 17 H -0.214 1.214 18 H -0.182 1.182 19 C 0.060 3.940 20 C -0.173 4.173 21 C -0.126 4.126 22 C -0.189 4.189 23 C -0.129 4.129 24 C -0.202 4.202 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.221 0.779 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.133 0.867 32 H 0.122 0.878 33 H 0.091 0.909 34 H 0.157 0.843 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.561 6.815 -7.005 10.401 hybrid contribution -0.558 -1.042 0.532 1.296 sum -4.118 5.773 -6.473 9.601 Atomic orbital electron populations 1.22509 0.95791 1.03098 1.02635 1.21371 0.92348 0.95251 0.85008 0.91857 1.86672 1.76875 1.57048 1.15424 1.23494 0.97542 1.04696 0.99541 1.87314 1.03241 1.73162 1.32269 1.23307 0.97941 1.05094 0.98633 1.19941 0.88855 0.80835 0.79966 1.90262 1.60970 1.45467 1.45564 1.41302 1.04215 1.40014 1.25776 1.19019 1.09447 0.91771 1.29605 0.87326 1.25439 0.96894 0.95808 0.94362 1.69661 1.39176 1.09700 1.30252 0.87004 0.82804 0.78612 0.82256 1.17528 1.21357 1.18248 1.18434 0.84772 0.96582 0.94242 1.21081 0.95504 1.03022 0.97736 1.20819 0.93201 0.99526 0.99042 1.20931 0.98861 1.02609 0.96462 1.21019 0.95088 0.99666 0.97088 1.22774 0.93062 1.01884 1.02510 0.91369 0.92008 0.91564 0.77883 0.89479 0.89027 0.86685 0.87787 0.90931 0.84280 0.86842 0.87327 0.86887 0.80456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.53 37.16 0.35 -1.08 16 2 C 0.12 1.30 3.57 -26.73 -0.10 1.21 16 3 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 4 O -0.56 -6.64 13.07 -35.23 -0.46 -7.10 16 5 C -0.10 -1.36 5.63 37.15 0.21 -1.15 16 6 S -0.19 -3.29 20.66 -107.50 -2.22 -5.51 16 7 C -0.10 -1.91 5.24 36.01 0.19 -1.72 16 8 C 0.51 11.81 7.59 -10.98 -0.08 11.73 16 9 O -0.54 -13.03 12.29 5.55 0.07 -12.96 16 10 N -0.40 -9.79 2.26 -58.98 -0.13 -9.92 16 11 C -0.37 -9.35 7.96 -14.94 -0.12 -9.46 16 12 H 0.11 2.79 7.90 -52.48 -0.41 2.38 16 13 C 0.09 2.19 4.29 -17.48 -0.08 2.11 16 14 N -0.86 -22.57 13.96 55.49 0.77 -21.80 16 15 Si 0.87 20.92 24.16 -169.99 -4.11 16.81 16 16 H -0.25 -5.84 6.06 56.52 0.34 -5.49 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.26 -6.64 6.90 56.52 0.39 -6.25 16 19 C 0.16 3.72 4.40 -83.69 -0.37 3.35 16 20 C -0.15 -3.46 5.77 -39.37 -0.23 -3.69 16 21 C -0.11 -2.11 9.79 -39.61 -0.39 -2.49 16 22 C -0.17 -3.10 10.04 -39.53 -0.40 -3.50 16 23 C -0.11 -2.12 10.04 -39.61 -0.40 -2.52 16 24 C -0.18 -4.11 9.03 -39.37 -0.36 -4.46 16 25 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.37 2.67 9.08 45.56 0.41 3.09 16 29 H 0.09 1.16 8.14 -51.92 -0.42 0.74 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.11 2.22 7.90 -51.92 -0.41 1.81 16 32 H 0.10 1.83 8.12 -51.93 -0.42 1.41 16 33 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.14 3.31 5.69 -52.48 -0.30 3.01 16 35 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 38 H 0.18 4.17 4.58 -56.01 -0.26 3.92 16 LS Contribution 323.98 15.07 4.88 4.88 Total: -1.00 -30.04 323.98 -7.35 -37.39 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -4.40 Total: 9.90 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -1.75 Total: -11.69 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.64 Total: -31.72 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.39 Total: -20.06 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.11 Total: 16.81 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.22 Total: -5.51 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.04 -7.35 -37.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298188298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.432 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds