Wall clock time and date at job start Tue Mar 31 2020 07:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47053 * 2 1 4 4 O 1.42903 * 109.46845 * 240.00165 * 2 1 3 5 5 C 1.52991 * 109.47160 * 119.99934 * 2 1 3 6 6 S 1.81405 * 109.47100 * 184.99795 * 5 2 1 7 7 C 1.81399 * 102.99765 * 180.02562 * 6 5 2 8 8 C 1.50703 * 109.46822 * 180.02562 * 7 6 5 9 9 O 1.21286 * 120.00205 * 5.02712 * 8 7 6 10 10 N 1.34775 * 120.00035 * 185.02901 * 8 7 6 11 11 C 1.37135 * 120.00110 * 3.75975 * 10 8 7 12 12 H 1.08005 * 119.99607 * 308.19528 * 11 10 8 13 13 C 1.38888 * 120.00170 * 128.19863 * 11 10 8 14 14 N 1.31430 * 119.99809 * 173.09610 * 13 11 10 15 15 Si 1.86798 * 120.00090 * 353.09023 * 13 11 10 16 16 H 1.48506 * 109.47000 * 95.34480 * 15 13 11 17 17 H 1.48497 * 109.47219 * 215.34653 * 15 13 11 18 18 H 1.48497 * 109.46974 * 335.34563 * 15 13 11 19 19 C 1.39796 * 119.99956 * 183.76094 * 10 8 7 20 20 C 1.38956 * 120.07625 * 171.69901 * 19 10 8 21 21 C 1.38080 * 119.92097 * 180.23217 * 20 19 10 22 22 C 1.38309 * 120.07830 * 359.46276 * 21 20 19 23 23 C 1.38316 * 120.15549 * 0.55677 * 22 21 20 24 24 C 1.38089 * 120.07234 * 359.70022 * 23 22 21 25 25 H 1.09008 * 109.46912 * 299.99837 * 1 2 3 26 26 H 1.08993 * 109.47457 * 59.99741 * 1 2 3 27 27 H 1.09001 * 109.47053 * 179.97438 * 1 2 3 28 28 H 0.96700 * 113.99827 * 59.99469 * 4 2 1 29 29 H 1.09006 * 109.47105 * 65.00309 * 5 2 1 30 30 H 1.08996 * 109.47783 * 305.00292 * 5 2 1 31 31 H 1.08999 * 109.47184 * 60.00799 * 7 6 5 32 32 H 1.08994 * 109.47708 * 299.99925 * 7 6 5 33 33 H 0.96996 * 119.99366 * 179.97438 * 14 13 11 34 34 H 1.08003 * 120.04226 * 359.94517 * 20 19 10 35 35 H 1.07999 * 119.96536 * 179.74536 * 21 20 19 36 36 H 1.07995 * 119.92641 * 180.25419 * 22 21 20 37 37 H 1.07995 * 119.96489 * 179.72405 * 23 22 21 38 38 H 1.08001 * 120.03633 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 16 3.8479 -0.5932 1.3255 7 6 4.2567 -1.4929 2.8467 8 6 5.7493 -1.4760 3.0546 9 8 6.4585 -0.8365 2.3068 10 7 6.2960 -2.1714 4.0714 11 6 5.5036 -2.9558 4.8698 12 1 4.6164 -2.5406 5.3248 13 6 5.8420 -4.2842 5.0934 14 7 5.1626 -4.9979 5.9631 15 14 7.2625 -5.0564 4.1579 16 1 8.4965 -4.9804 4.9806 17 1 6.9486 -6.4782 3.8664 18 1 7.4717 -4.3243 2.8830 19 6 7.6708 -2.0931 4.3122 20 6 8.2111 -2.6668 5.4567 21 6 9.5688 -2.5834 5.6938 22 6 10.3923 -1.9394 4.7882 23 6 9.8579 -1.3669 3.6481 24 6 8.5003 -1.4419 3.4073 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7209 -0.2701 -1.9980 29 1 1.7517 -1.7715 1.2055 30 1 1.6054 -0.2618 2.1369 31 1 3.9130 -2.5239 2.7626 32 1 3.7668 -1.0146 3.6947 33 1 5.3988 -5.9257 6.1190 34 1 7.5692 -3.1733 6.1623 35 1 9.9890 -3.0254 6.5851 36 1 11.4545 -1.8792 4.9740 37 1 10.5032 -0.8609 2.9453 38 1 8.0837 -0.9951 2.5168 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298188298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:08 Heat of formation + Delta-G solvation = -54.791186 kcal Electronic energy + Delta-G solvation = -21321.658816 eV Core-core repulsion = 18062.590656 eV Total energy + Delta-G solvation = -3259.068160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.83567 -39.22481 -38.47223 -37.00778 -34.23554 -33.01520 -32.06084 -31.71213 -29.67711 -28.31746 -27.18892 -23.81215 -23.12816 -22.44085 -21.28629 -19.97252 -18.42691 -18.26605 -17.75811 -17.40056 -17.00671 -16.61891 -15.94867 -15.82046 -15.35549 -15.26887 -14.95588 -14.78668 -14.58497 -14.28426 -14.24791 -13.96339 -13.76339 -13.35311 -13.27911 -13.18342 -12.70634 -12.64077 -12.52591 -12.15052 -11.91831 -11.83458 -11.39078 -11.12248 -10.87815 -10.73435 -10.24843 -9.68667 -8.92779 -8.62791 -8.57870 -6.53974 0.36911 0.49794 0.52662 1.19946 1.26183 1.36124 1.61277 1.69911 2.09685 2.41822 2.69264 3.07247 3.28797 3.70647 3.84287 4.11559 4.12916 4.15764 4.17358 4.18282 4.38881 4.45062 4.47464 4.64945 4.65429 4.75698 4.84633 4.95705 4.97620 5.20343 5.27764 5.44385 5.54763 5.63750 5.70459 5.92965 5.96270 6.35101 6.75695 6.93023 7.11645 7.43314 8.43682 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.004552 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.809032 B = 6149.036756 C = 7025.013003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.120 3.880 3 H 0.067 0.933 4 O -0.581 6.581 5 C -0.093 4.093 6 S -0.228 6.228 7 C -0.090 4.090 8 C 0.502 3.498 9 O -0.556 6.556 10 N -0.416 5.416 11 C -0.364 4.364 12 H 0.095 0.905 13 C 0.063 3.937 14 N -0.883 5.883 15 Si 0.909 3.091 16 H -0.236 1.236 17 H -0.284 1.284 18 H -0.286 1.286 19 C 0.126 3.874 20 C -0.174 4.174 21 C -0.107 4.107 22 C -0.155 4.155 23 C -0.106 4.106 24 C -0.205 4.205 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.394 0.606 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.285 0.715 34 H 0.121 0.879 35 H 0.145 0.855 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.833 7.169 -6.727 10.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.060 3.940 3 H 0.085 0.915 4 O -0.390 6.390 5 C -0.241 4.241 6 S -0.001 6.001 7 C -0.240 4.240 8 C 0.294 3.706 9 O -0.439 6.439 10 N -0.127 5.127 11 C -0.491 4.491 12 H 0.113 0.887 13 C -0.144 4.144 14 N -0.518 5.518 15 Si 0.735 3.265 16 H -0.159 1.159 17 H -0.211 1.211 18 H -0.212 1.212 19 C 0.030 3.970 20 C -0.194 4.194 21 C -0.125 4.125 22 C -0.174 4.174 23 C -0.124 4.124 24 C -0.224 4.224 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.244 0.756 29 H 0.102 0.898 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.096 0.904 34 H 0.138 0.862 35 H 0.162 0.838 36 H 0.173 0.827 37 H 0.165 0.835 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.658 7.393 -7.220 10.670 hybrid contribution -0.795 -1.108 0.546 1.469 sum -3.453 6.285 -6.673 9.796 Atomic orbital electron populations 1.22427 0.93065 1.03301 1.04264 1.21448 0.94173 0.94695 0.83693 0.91517 1.86618 1.77610 1.57966 1.16780 1.23695 0.93195 1.05231 1.01990 1.87377 1.08429 1.72865 1.31460 1.23171 0.95602 1.05142 1.00082 1.20505 0.90354 0.80232 0.79520 1.90252 1.61784 1.45930 1.45964 1.41410 1.04759 1.40399 1.26151 1.18890 1.09154 0.91902 1.29154 0.88721 1.25738 0.97957 0.96040 0.94707 1.69691 1.40386 1.10241 1.31447 0.86401 0.82246 0.77562 0.80337 1.15944 1.21113 1.21159 1.18723 0.84626 0.98157 0.95460 1.21088 0.96915 1.04066 0.97350 1.21257 0.92018 0.98917 1.00342 1.21422 1.00939 1.00126 0.94870 1.21432 0.93991 0.98913 0.98077 1.22771 0.94716 1.02782 1.02172 0.90248 0.89917 0.92032 0.75622 0.89836 0.86902 0.87287 0.86526 0.90450 0.86158 0.83753 0.82736 0.83542 0.82018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.53 71.98 0.69 -1.61 16 2 C 0.12 2.41 3.57 30.59 0.11 2.52 16 3 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 4 O -0.58 -13.30 13.07 -148.98 -1.95 -15.24 16 5 C -0.09 -2.35 5.63 71.98 0.41 -1.94 16 6 S -0.23 -8.16 20.66 -56.49 -1.17 -9.33 16 7 C -0.09 -3.56 5.24 71.24 0.37 -3.19 16 8 C 0.50 23.92 7.59 87.66 0.67 24.59 16 9 O -0.56 -27.74 12.29 -3.05 -0.04 -27.78 16 10 N -0.42 -20.81 2.26 -458.89 -1.04 -21.85 16 11 C -0.36 -18.86 7.96 84.02 0.67 -18.19 16 12 H 0.10 5.06 7.90 -2.91 -0.02 5.04 16 13 C 0.06 3.31 4.29 84.91 0.36 3.67 16 14 N -0.88 -47.27 13.96 21.65 0.30 -46.97 16 15 Si 0.91 43.63 24.16 68.60 1.66 45.28 16 16 H -0.24 -10.59 6.06 99.48 0.60 -9.99 16 17 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 18 H -0.29 -14.96 6.90 99.48 0.69 -14.28 16 19 C 0.13 6.05 4.40 38.21 0.17 6.22 16 20 C -0.17 -7.77 5.77 22.40 0.13 -7.64 16 21 C -0.11 -3.89 9.79 22.25 0.22 -3.68 16 22 C -0.15 -5.02 10.04 22.31 0.22 -4.80 16 23 C -0.11 -3.80 10.04 22.25 0.22 -3.57 16 24 C -0.20 -9.17 9.03 22.41 0.20 -8.97 16 25 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.39 5.07 9.08 -74.06 -0.67 4.40 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.11 4.39 7.90 -2.39 -0.02 4.37 16 32 H 0.12 4.22 8.12 -2.39 -0.02 4.20 16 33 H 0.29 14.27 8.31 -92.71 -0.77 13.50 16 34 H 0.12 5.79 5.69 -2.91 -0.02 5.77 16 35 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 36 H 0.16 3.65 8.06 -2.91 -0.02 3.62 16 37 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 38 H 0.16 7.78 4.58 -58.79 -0.27 7.51 16 Total: -1.00 -66.37 323.98 2.23 -64.14 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.02 Total: 28.32 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 4.44 Total: -16.58 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -0.74 Total: -68.82 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -1.99 Total: -43.02 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.66 Total: 45.28 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.17 Total: -9.33 kcal Total: -66.37 2.23 -64.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298188298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.351 kcal (2) G-P(sol) polarization free energy of solvation -66.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds