Wall clock time and date at job start Tue Mar 31 2020 07:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99671 * 2 1 4 4 C 1.38754 * 120.05978 * 0.20027 * 3 2 1 5 5 C 1.38115 * 119.94234 * 180.27971 * 4 3 2 6 6 C 1.38290 * 120.05791 * 359.76774 * 5 4 3 7 7 C 1.38244 * 120.11180 * 359.97438 * 6 5 4 8 8 C 1.50693 * 119.97178 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.47336 * 160.01784 * 8 7 6 10 10 C 1.52995 * 109.47292 * 280.02104 * 8 7 6 11 11 N 1.46507 * 109.47040 * 40.02277 * 8 7 6 12 12 C 1.34781 * 119.99702 * 155.00078 * 11 8 7 13 13 O 1.21275 * 120.00333 * 359.97438 * 12 11 8 14 14 C 1.50703 * 119.99764 * 179.97438 * 12 11 8 15 15 S 1.81001 * 109.47140 * 179.97438 * 14 12 11 16 16 C 1.76198 * 99.99636 * 179.97438 * 15 14 12 17 17 H 1.07993 * 120.00732 * 0.02562 * 16 15 14 18 18 C 1.38804 * 119.99584 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00023 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99796 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46947 * 60.00477 * 20 18 16 22 22 H 1.48509 * 109.46900 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47494 * 300.00145 * 20 18 16 24 24 C 1.38167 * 120.05373 * 0.02562 * 7 6 5 25 25 H 1.09001 * 109.47062 * 60.00447 * 1 2 3 26 26 H 1.08998 * 109.47112 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47603 * 300.00651 * 1 2 3 28 28 H 1.08000 * 120.02374 * 0.02897 * 4 3 2 29 29 H 1.08007 * 119.97042 * 179.75154 * 5 4 3 30 30 H 1.08007 * 119.94201 * 180.02562 * 6 5 4 31 31 H 1.09006 * 109.47434 * 179.97438 * 10 8 7 32 32 H 1.09001 * 109.47417 * 299.99811 * 10 8 7 33 33 H 1.08999 * 109.47367 * 60.00112 * 10 8 7 34 34 H 0.96991 * 119.99829 * 334.99626 * 11 8 7 35 35 H 1.09005 * 109.47147 * 300.00334 * 14 12 11 36 36 H 1.09004 * 109.47070 * 59.99953 * 14 12 11 37 37 H 0.97007 * 120.00279 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.02367 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3754 0.0042 5 6 1.9208 3.6047 -0.0017 6 6 3.3019 3.6758 -0.0068 7 6 4.0560 2.5171 -0.0056 8 6 5.5607 2.5982 -0.0119 9 1 5.9769 1.6547 0.3410 10 6 6.0509 2.8711 -1.4353 11 7 5.9949 3.6839 0.8708 12 6 7.2228 3.6511 1.4256 13 8 7.9680 2.7226 1.1946 14 6 7.6697 4.7681 2.3331 15 16 9.3513 4.4367 2.9149 16 6 9.6115 5.8577 3.9237 17 1 8.8332 6.5999 4.0224 18 6 10.8166 6.0227 4.5925 19 7 11.7650 5.1180 4.4727 20 14 11.0928 7.5295 5.6615 21 1 10.0751 7.5628 6.7424 22 1 12.4503 7.4693 6.2606 23 1 10.9729 8.7546 4.8308 24 6 3.4311 1.2848 0.0002 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.2128 2.3204 0.0079 29 1 1.3339 4.5114 -0.0024 30 1 3.7922 4.6381 -0.0110 31 1 7.1393 2.9303 -1.4397 32 1 5.7279 2.0634 -2.0920 33 1 5.6348 3.8147 -1.7882 34 1 5.3988 4.4263 1.0558 35 1 7.6535 5.7102 1.7849 36 1 6.9962 4.8335 3.1877 37 1 12.6073 5.2334 4.9398 38 1 4.0207 0.3799 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298495998.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:27 Heat of formation + Delta-G solvation = -54.150340 kcal Electronic energy + Delta-G solvation = -20300.627400 eV Core-core repulsion = 17041.587029 eV Total energy + Delta-G solvation = -3259.040371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.57967 -39.36409 -37.86617 -35.11104 -32.41419 -31.99369 -30.79887 -29.49724 -28.39801 -27.60454 -25.47237 -23.86635 -22.94350 -21.10114 -20.07287 -18.40883 -17.67792 -16.69810 -16.44203 -16.08443 -16.05041 -15.63934 -14.95882 -14.78934 -14.50437 -14.06094 -13.80376 -13.63150 -13.46221 -13.12236 -12.77032 -12.61642 -12.53906 -12.25336 -11.88682 -11.69883 -11.49312 -11.32422 -11.02993 -11.02663 -10.89459 -10.75197 -9.81120 -9.42259 -9.15616 -9.04649 -8.87853 -8.49039 -8.22101 -6.48055 -6.19921 -3.90344 0.99684 1.16679 2.87989 3.08157 3.11642 3.24659 3.28639 3.32092 3.48079 3.77611 4.22088 4.37834 4.48110 4.73073 4.76603 4.77239 4.94881 5.05255 5.09520 5.14890 5.15971 5.23460 5.32131 5.39244 5.61177 5.67638 5.73054 5.90731 5.92183 5.98763 6.11890 6.16003 6.19349 6.27882 6.44745 6.68817 7.08041 7.60834 7.72388 8.36615 8.63095 9.25183 10.87422 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.030869 B = 0.002653 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.838933 B =10550.352104 C =10815.955411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.129 3.871 4 C -0.211 4.211 5 C -0.076 4.076 6 C -0.150 4.150 7 C -0.046 4.046 8 C 0.183 3.817 9 H 0.099 0.901 10 C -0.158 4.158 11 N -0.733 5.733 12 C 0.534 3.466 13 O -0.516 6.516 14 C -0.153 4.153 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.140 4.140 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.055 0.945 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.397 0.603 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.269 0.731 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.064 -4.780 -11.078 26.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.084 3.916 4 C -0.230 4.230 5 C -0.094 4.094 6 C -0.169 4.169 7 C -0.047 4.047 8 C 0.078 3.922 9 H 0.116 0.884 10 C -0.216 4.216 11 N -0.388 5.388 12 C 0.320 3.680 13 O -0.390 6.390 14 C -0.304 4.304 15 S 0.168 5.832 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.200 1.200 24 C -0.159 4.159 25 H 0.073 0.927 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.533 -6.594 -11.409 26.104 hybrid contribution -1.360 2.584 1.059 3.106 sum -23.893 -4.011 -10.350 26.346 Atomic orbital electron populations 1.23057 0.78372 1.03983 1.01326 1.86086 1.21384 1.26912 1.88694 1.18963 0.92177 0.84197 0.96300 1.21233 0.99985 0.92440 1.09298 1.20906 0.94423 0.97042 0.97066 1.20875 0.93775 0.98068 1.04179 1.19772 0.95086 0.92635 0.97167 1.19725 0.88616 0.92780 0.91074 0.88353 1.22165 1.02634 1.01936 0.94852 1.46167 1.17071 1.25360 1.50243 1.20310 0.80664 0.87371 0.79637 1.90698 1.52774 1.35224 1.60290 1.23537 1.06746 0.99283 1.00843 1.85390 1.05940 1.32051 1.59862 1.22829 1.03793 1.08405 1.33394 0.90990 1.24991 0.94947 0.97261 0.96390 1.70007 1.05383 1.33795 1.41106 0.86228 0.77524 0.81745 0.80016 1.19951 1.20822 1.19952 1.20259 0.91389 0.98206 1.06044 0.92676 0.88206 0.92615 0.85541 0.85598 0.85723 0.91080 0.91648 0.92327 0.76771 0.89206 0.89225 0.92136 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.13 10.50 -19.44 -0.20 -3.33 16 3 C 0.13 1.33 6.69 -39.22 -0.26 1.07 16 4 C -0.21 -1.84 9.04 -39.44 -0.36 -2.19 16 5 C -0.08 -0.64 10.04 -39.61 -0.40 -1.04 16 6 C -0.15 -1.42 9.05 -39.56 -0.36 -1.78 16 7 C -0.05 -0.50 4.95 -104.65 -0.52 -1.02 16 8 C 0.18 2.29 2.77 -69.08 -0.19 2.09 16 9 H 0.10 1.40 7.44 -51.93 -0.39 1.01 16 10 C -0.16 -1.81 9.46 37.16 0.35 -1.46 16 11 N -0.73 -10.07 5.03 -54.93 -0.28 -10.35 16 12 C 0.53 9.99 7.81 -10.98 -0.09 9.91 16 13 O -0.52 -11.64 15.52 5.56 0.09 -11.55 16 14 C -0.15 -3.11 6.16 36.01 0.22 -2.88 16 15 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 16 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.27 13.22 55.49 0.73 -25.53 16 20 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 C -0.14 -1.54 9.61 -39.43 -0.38 -1.92 16 25 H 0.05 0.25 7.67 -51.93 -0.40 -0.15 16 26 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 28 H 0.13 0.81 6.30 -52.49 -0.33 0.48 16 29 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 30 H 0.12 0.99 6.91 -52.48 -0.36 0.63 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.40 4.39 6.87 -40.82 -0.28 4.11 16 35 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 36 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 37 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.13 1.40 8.04 -52.49 -0.42 0.98 16 LS Contribution 340.00 15.07 5.12 5.12 Total: -1.00 -34.78 340.00 -7.64 -42.42 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.08 Total: 1.68 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -0.79 Total: -11.08 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.46 Total: -35.88 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.12 Total: -14.88 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.78 -7.64 -42.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298495998.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.729 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds