Wall clock time and date at job start Tue Mar 31 2020 07:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99671 * 2 1 4 4 C 1.38754 * 120.05978 * 0.20027 * 3 2 1 5 5 C 1.38115 * 119.94234 * 180.27971 * 4 3 2 6 6 C 1.38290 * 120.05791 * 359.76774 * 5 4 3 7 7 C 1.38244 * 120.11180 * 359.97438 * 6 5 4 8 8 C 1.50693 * 119.97178 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.47336 * 160.01784 * 8 7 6 10 10 C 1.52995 * 109.47292 * 280.02104 * 8 7 6 11 11 N 1.46507 * 109.47040 * 40.02277 * 8 7 6 12 12 C 1.34781 * 119.99702 * 155.00078 * 11 8 7 13 13 O 1.21275 * 120.00333 * 359.97438 * 12 11 8 14 14 C 1.50703 * 119.99764 * 179.97438 * 12 11 8 15 15 S 1.81001 * 109.47140 * 179.97438 * 14 12 11 16 16 C 1.76198 * 99.99636 * 179.97438 * 15 14 12 17 17 H 1.07993 * 120.00732 * 0.02562 * 16 15 14 18 18 C 1.38804 * 119.99584 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00023 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99796 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46947 * 60.00477 * 20 18 16 22 22 H 1.48509 * 109.46900 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47494 * 300.00145 * 20 18 16 24 24 C 1.38167 * 120.05373 * 0.02562 * 7 6 5 25 25 H 1.09001 * 109.47062 * 60.00447 * 1 2 3 26 26 H 1.08998 * 109.47112 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47603 * 300.00651 * 1 2 3 28 28 H 1.08000 * 120.02374 * 0.02897 * 4 3 2 29 29 H 1.08007 * 119.97042 * 179.75154 * 5 4 3 30 30 H 1.08007 * 119.94201 * 180.02562 * 6 5 4 31 31 H 1.09006 * 109.47434 * 179.97438 * 10 8 7 32 32 H 1.09001 * 109.47417 * 299.99811 * 10 8 7 33 33 H 1.08999 * 109.47367 * 60.00112 * 10 8 7 34 34 H 0.96991 * 119.99829 * 334.99626 * 11 8 7 35 35 H 1.09005 * 109.47147 * 300.00334 * 14 12 11 36 36 H 1.09004 * 109.47070 * 59.99953 * 14 12 11 37 37 H 0.97007 * 120.00279 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.02367 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3754 0.0042 5 6 1.9208 3.6047 -0.0017 6 6 3.3019 3.6758 -0.0068 7 6 4.0560 2.5171 -0.0056 8 6 5.5607 2.5982 -0.0119 9 1 5.9769 1.6547 0.3410 10 6 6.0509 2.8711 -1.4353 11 7 5.9949 3.6839 0.8708 12 6 7.2228 3.6511 1.4256 13 8 7.9680 2.7226 1.1946 14 6 7.6697 4.7681 2.3331 15 16 9.3513 4.4367 2.9149 16 6 9.6115 5.8577 3.9237 17 1 8.8332 6.5999 4.0224 18 6 10.8166 6.0227 4.5925 19 7 11.7650 5.1180 4.4727 20 14 11.0928 7.5295 5.6615 21 1 10.0751 7.5628 6.7424 22 1 12.4503 7.4693 6.2606 23 1 10.9729 8.7546 4.8308 24 6 3.4311 1.2848 0.0002 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.2128 2.3204 0.0079 29 1 1.3339 4.5114 -0.0024 30 1 3.7922 4.6381 -0.0110 31 1 7.1393 2.9303 -1.4397 32 1 5.7279 2.0634 -2.0920 33 1 5.6348 3.8147 -1.7882 34 1 5.3988 4.4263 1.0558 35 1 7.6535 5.7102 1.7849 36 1 6.9962 4.8335 3.1877 37 1 12.6073 5.2334 4.9398 38 1 4.0207 0.3799 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298495998.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:27 Heat of formation + Delta-G solvation = -77.489100 kcal Electronic energy + Delta-G solvation = -20301.639444 eV Core-core repulsion = 17041.587029 eV Total energy + Delta-G solvation = -3260.052415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.39868 -40.58199 -38.75425 -36.22568 -34.57442 -33.13284 -31.63670 -30.48861 -29.67034 -28.12157 -27.64737 -24.80539 -23.68007 -22.11158 -21.29823 -19.92304 -18.96401 -17.92852 -17.36883 -16.98748 -16.86622 -16.67300 -16.62477 -16.43315 -15.80533 -15.38167 -14.84752 -14.58767 -14.48729 -14.31960 -14.29921 -13.67932 -13.32928 -13.24697 -13.15874 -12.95389 -12.85389 -12.64389 -12.49158 -12.29849 -11.95907 -11.75071 -11.65825 -11.11879 -10.97013 -10.26968 -10.24398 -9.84647 -9.19621 -8.65649 -8.33386 -6.11511 0.25068 0.45054 1.27547 1.44840 1.47475 1.57224 1.61360 2.18731 2.28677 2.42404 2.76711 3.00565 3.33034 3.53368 3.85184 3.95552 4.10734 4.15339 4.21706 4.30788 4.34060 4.37061 4.40311 4.51611 4.54106 4.61360 4.73740 4.75833 4.90916 5.00472 5.21100 5.29546 5.35805 5.42731 5.45078 5.61257 5.77099 6.20735 6.44078 6.48429 7.07634 7.23127 8.75555 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.030869 B = 0.002653 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.838933 B =10550.352104 C =10815.955411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.117 3.883 4 C -0.208 4.208 5 C -0.073 4.073 6 C -0.154 4.154 7 C -0.054 4.054 8 C 0.185 3.815 9 H 0.074 0.926 10 C -0.151 4.151 11 N -0.708 5.708 12 C 0.536 3.464 13 O -0.562 6.562 14 C -0.129 4.129 15 S -0.151 6.151 16 C -0.546 4.546 17 H 0.083 0.917 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.262 1.262 22 H -0.279 1.279 23 H -0.261 1.261 24 C -0.161 4.161 25 H 0.068 0.932 26 H 0.115 0.885 27 H 0.065 0.935 28 H 0.152 0.848 29 H 0.156 0.844 30 H 0.142 0.858 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.414 0.586 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.271 0.729 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.107 -2.572 -11.115 29.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.072 3.928 4 C -0.226 4.226 5 C -0.091 4.091 6 C -0.173 4.173 7 C -0.055 4.055 8 C 0.080 3.920 9 H 0.092 0.908 10 C -0.210 4.210 11 N -0.363 5.363 12 C 0.322 3.678 13 O -0.440 6.440 14 C -0.280 4.280 15 S 0.076 5.924 16 C -0.694 4.694 17 H 0.102 0.898 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.820 3.180 21 H -0.187 1.187 22 H -0.205 1.205 23 H -0.186 1.186 24 C -0.180 4.180 25 H 0.087 0.913 26 H 0.134 0.866 27 H 0.084 0.916 28 H 0.169 0.831 29 H 0.174 0.826 30 H 0.159 0.841 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.252 0.748 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.080 0.920 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -25.644 -4.373 -11.466 28.429 hybrid contribution -0.603 1.814 0.989 2.152 sum -26.247 -2.559 -10.478 28.377 Atomic orbital electron populations 1.23349 0.76293 1.05530 1.02401 1.86058 1.23629 1.27040 1.88693 1.19103 0.92060 0.85108 0.96548 1.21569 1.01281 0.91890 1.07899 1.21274 0.94163 0.98075 0.95577 1.21098 0.94459 0.97977 1.03753 1.19546 0.93633 0.93384 0.98896 1.19724 0.90124 0.91077 0.91057 0.90774 1.22102 1.00910 1.03480 0.94467 1.45907 1.15395 1.26009 1.48944 1.20075 0.81742 0.86362 0.79593 1.90690 1.54496 1.36780 1.62032 1.23374 1.01942 1.00754 1.01958 1.85589 1.12406 1.33482 1.60888 1.23175 1.04438 1.08418 1.33396 0.89841 1.26143 0.94493 1.00790 0.97819 1.70180 1.06015 1.36210 1.42393 0.84999 0.77640 0.77302 0.78021 1.18667 1.20461 1.18581 1.20318 0.92257 0.98128 1.07331 0.91342 0.86643 0.91648 0.83055 0.82608 0.84076 0.93645 0.90236 0.90540 0.74754 0.86948 0.87291 0.92010 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -6.39 10.50 -92.47 -0.97 -7.36 16 3 C 0.12 2.28 6.69 22.51 0.15 2.43 16 4 C -0.21 -3.02 9.04 22.36 0.20 -2.81 16 5 C -0.07 -0.97 10.04 22.25 0.22 -0.75 16 6 C -0.15 -2.47 9.05 22.28 0.20 -2.27 16 7 C -0.05 -1.11 4.95 -19.88 -0.10 -1.21 16 8 C 0.18 4.58 2.77 44.24 0.12 4.70 16 9 H 0.07 2.22 7.44 -2.39 -0.02 2.20 16 10 C -0.15 -3.41 9.46 71.98 0.68 -2.73 16 11 N -0.71 -18.68 5.03 -446.10 -2.24 -20.92 16 12 C 0.54 20.09 7.81 87.66 0.68 20.77 16 13 O -0.56 -26.33 15.52 -3.02 -0.05 -26.38 16 14 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 15 S -0.15 -8.43 20.57 -56.49 -1.16 -9.60 16 16 C -0.55 -31.29 9.50 67.96 0.65 -30.64 16 17 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 18 C 0.01 0.70 5.49 84.86 0.47 1.17 16 19 N -0.91 -56.35 13.22 21.65 0.29 -56.07 16 20 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 21 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 22 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 24 C -0.16 -3.54 9.61 22.37 0.21 -3.32 16 25 H 0.07 0.44 7.67 -2.39 -0.02 0.43 16 26 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.47 7.65 -2.39 -0.02 0.45 16 28 H 0.15 1.36 6.30 -2.91 -0.02 1.34 16 29 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 30 H 0.14 1.72 6.91 -2.91 -0.02 1.70 16 31 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.41 8.10 6.87 -92.71 -0.64 7.46 16 35 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 36 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 37 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 38 H 0.12 2.80 8.04 -2.91 -0.02 2.78 16 Total: -1.00 -78.20 340.00 3.37 -74.83 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.43 Total: 17.89 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 5.05 Total: -18.08 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -1.96 Total: -76.99 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -1.02 Total: -33.74 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.60 kcal Total: -78.20 3.37 -74.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298495998.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.657 kcal (2) G-P(sol) polarization free energy of solvation -78.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds