Wall clock time and date at job start Tue Mar 31 2020 07:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38734 * 120.05067 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94237 * 179.74240 * 4 3 2 6 6 C 1.38264 * 120.05437 * 0.25588 * 5 4 3 7 7 C 1.50706 * 119.94244 * 179.97438 * 6 5 4 8 8 H 1.08991 * 109.47003 * 20.00251 * 7 6 5 9 9 C 1.52999 * 109.47275 * 260.00049 * 7 6 5 10 10 N 1.46505 * 109.46653 * 140.00269 * 7 6 5 11 11 C 1.34781 * 119.99419 * 204.99755 * 10 7 6 12 12 O 1.21279 * 120.00168 * 0.02562 * 11 10 7 13 13 C 1.50697 * 119.99673 * 180.02562 * 11 10 7 14 14 S 1.81004 * 109.47180 * 180.02562 * 13 11 10 15 15 C 1.76200 * 99.99912 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00112 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99787 * 179.97438 * 15 14 13 18 18 N 1.31631 * 119.99971 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99899 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46863 * 90.00569 * 19 17 15 21 21 H 1.48501 * 109.46858 * 210.00395 * 19 17 15 22 22 H 1.48498 * 109.47149 * 330.00291 * 19 17 15 23 23 C 1.38268 * 120.11230 * 359.97438 * 6 5 4 24 24 C 1.38137 * 120.05826 * 0.02562 * 23 6 5 25 25 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47195 * 300.00308 * 1 2 3 27 27 H 1.09000 * 109.46994 * 59.99845 * 1 2 3 28 28 H 1.08002 * 120.03267 * 0.02580 * 4 3 2 29 29 H 1.07999 * 119.97318 * 180.27444 * 5 4 3 30 30 H 1.08993 * 109.47143 * 180.02562 * 9 7 6 31 31 H 1.09005 * 109.47076 * 299.99857 * 9 7 6 32 32 H 1.08998 * 109.47119 * 60.00037 * 9 7 6 33 33 H 0.96992 * 120.00197 * 25.00202 * 10 7 6 34 34 H 1.09004 * 109.47564 * 300.00011 * 13 11 10 35 35 H 1.08996 * 109.47246 * 60.00099 * 13 11 10 36 36 H 0.96995 * 119.99892 * 179.97438 * 18 17 15 37 37 H 1.08007 * 119.96697 * 180.02562 * 23 6 5 38 38 H 1.07992 * 120.03165 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0059 6 6 3.3019 3.6758 -0.0054 7 6 3.9861 5.0186 -0.0107 8 1 5.0101 4.9031 -0.3658 9 6 3.9998 5.5896 1.4087 10 7 3.2616 5.9322 -0.8977 11 6 3.9038 6.9743 -1.4618 12 8 5.0815 7.1553 -1.2356 13 6 3.1585 7.9144 -2.3737 14 16 4.2864 9.1993 -2.9680 15 6 3.1846 10.1287 -3.9813 16 1 2.1519 9.8267 -4.0746 17 6 3.6437 11.2498 -4.6589 18 7 4.9022 11.6182 -4.5449 19 14 2.4758 12.2348 -5.7338 20 1 1.8313 13.2969 -4.9204 21 1 3.2347 12.8568 -6.8485 22 1 1.4332 11.3336 -6.2871 23 6 1.9211 3.6048 -0.0001 24 6 1.2915 2.3752 0.0053 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.0209 0.3800 -0.0014 29 1 5.1345 2.5750 -0.0108 30 1 4.4943 6.5609 1.4047 31 1 2.9758 5.7050 1.7638 32 1 4.5388 4.9098 2.0686 33 1 2.3198 5.7872 -1.0788 34 1 2.7618 7.3585 -3.2232 35 1 2.3370 8.3765 -1.8263 36 1 5.2231 12.4014 -5.0187 37 1 1.3342 4.5115 -0.0001 38 1 0.2130 2.3202 0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298502069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:30 Heat of formation + Delta-G solvation = -54.604222 kcal Electronic energy + Delta-G solvation = -20278.739299 eV Core-core repulsion = 17019.679247 eV Total energy + Delta-G solvation = -3259.060052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.57567 -39.37499 -37.89102 -35.01509 -32.42252 -31.67995 -31.37111 -29.44671 -28.36840 -27.50640 -25.48054 -23.77437 -22.94303 -21.10980 -20.07703 -18.54958 -17.89661 -16.71445 -16.57658 -16.07921 -15.93340 -15.15462 -14.95078 -14.79850 -14.31719 -14.19174 -13.86253 -13.79174 -13.45589 -13.12335 -12.80368 -12.74744 -12.55820 -12.28389 -11.96544 -11.78647 -11.27312 -11.15753 -11.06001 -11.01883 -10.99170 -10.75309 -9.80939 -9.39552 -9.28845 -9.06550 -8.92235 -8.38353 -8.22576 -6.48962 -6.21033 -3.91359 1.05587 1.10120 2.93189 3.04264 3.11276 3.22688 3.28140 3.32050 3.47641 3.76618 4.21067 4.45231 4.48444 4.58213 4.72751 4.76852 5.04722 5.07778 5.11608 5.14096 5.14755 5.27221 5.32702 5.38884 5.59321 5.70616 5.71012 5.88840 5.90365 5.97855 6.04483 6.15006 6.19180 6.32499 6.45287 6.70141 7.05695 7.60174 7.72339 8.35857 8.63021 9.24277 10.86396 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.026316 B = 0.002731 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.735724 B =10250.863784 C =10954.141310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.123 3.877 4 C -0.148 4.148 5 C -0.068 4.068 6 C -0.122 4.122 7 C 0.187 3.813 8 H 0.096 0.904 9 C -0.158 4.158 10 N -0.734 5.734 11 C 0.534 3.466 12 O -0.516 6.516 13 C -0.154 4.154 14 S -0.059 6.059 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.073 4.073 24 C -0.204 4.204 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.396 0.604 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.125 0.875 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.277 -21.705 11.234 26.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.078 3.922 4 C -0.167 4.167 5 C -0.086 4.086 6 C -0.123 4.123 7 C 0.082 3.918 8 H 0.114 0.886 9 C -0.216 4.216 10 N -0.389 5.389 11 C 0.320 3.680 12 O -0.390 6.390 13 C -0.304 4.304 14 S 0.167 5.833 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.092 4.092 24 C -0.223 4.223 25 H 0.117 0.883 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.150 0.850 29 H 0.151 0.849 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.231 0.769 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.143 0.857 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.077 -21.458 11.553 25.377 hybrid contribution -2.942 0.476 -1.046 3.158 sum -10.019 -20.982 10.507 25.515 Atomic orbital electron populations 1.23061 0.78343 1.03946 1.01456 1.86068 1.21435 1.27008 1.88755 1.19063 0.92422 0.84131 0.96602 1.20417 0.91345 0.98621 1.06267 1.20858 1.00131 0.90681 0.96946 1.19918 0.93765 0.94873 1.03734 1.19667 0.96536 0.84910 0.90651 0.88610 1.22173 1.02198 1.02037 0.95197 1.46190 1.13799 1.29002 1.49885 1.20301 0.87502 0.80528 0.79683 1.90696 1.15689 1.72018 1.60642 1.23538 1.04533 1.01553 1.00819 1.85390 1.13177 1.25485 1.59233 1.22868 0.97965 1.14564 1.32956 0.90957 1.24995 0.95650 0.96545 0.96422 1.70017 1.14088 1.25151 1.41028 0.86168 0.80104 0.79704 0.79523 1.20284 1.20753 1.19707 1.20734 0.93933 0.97132 0.97360 1.21197 1.00050 0.92215 1.08807 0.88256 0.92624 0.92540 0.85041 0.84882 0.91288 0.92531 0.91737 0.76946 0.89260 0.89257 0.92190 0.85699 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.96 10.50 -19.44 -0.20 -3.16 16 3 C 0.12 1.21 6.69 -39.21 -0.26 0.95 16 4 C -0.15 -1.42 9.99 -39.43 -0.39 -1.81 16 5 C -0.07 -0.66 9.66 -39.61 -0.38 -1.04 16 6 C -0.12 -1.27 4.96 -104.60 -0.52 -1.79 16 7 C 0.19 2.28 2.77 -69.08 -0.19 2.09 16 8 H 0.10 1.32 7.43 -51.93 -0.39 0.93 16 9 C -0.16 -1.79 9.46 37.16 0.35 -1.44 16 10 N -0.73 -9.99 5.03 -54.93 -0.28 -10.27 16 11 C 0.53 9.94 7.81 -10.98 -0.09 9.85 16 12 O -0.52 -11.59 15.52 5.56 0.09 -11.50 16 13 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 14 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 15 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 16 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 17 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 19 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 23 C -0.07 -0.69 9.05 -39.61 -0.36 -1.05 16 24 C -0.20 -1.82 9.04 -39.44 -0.36 -2.18 16 25 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 27 H 0.06 0.28 7.67 -51.93 -0.40 -0.12 16 28 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.13 1.09 8.03 -52.49 -0.42 0.67 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.40 4.35 6.86 -40.82 -0.28 4.07 16 34 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 35 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.13 0.99 6.91 -52.48 -0.36 0.62 16 38 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 LS Contribution 340.00 15.07 5.12 5.12 Total: -1.00 -34.74 340.00 -7.64 -42.38 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.08 Total: 1.47 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -0.79 Total: -11.14 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.46 Total: -35.75 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.12 Total: -14.67 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.74 -7.64 -42.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298502069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.221 kcal (2) G-P(sol) polarization free energy of solvation -34.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds