Wall clock time and date at job start Tue Mar 31 2020 07:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38734 * 120.05067 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94237 * 179.74240 * 4 3 2 6 6 C 1.38264 * 120.05437 * 0.25588 * 5 4 3 7 7 C 1.50706 * 119.94244 * 179.97438 * 6 5 4 8 8 H 1.08991 * 109.47003 * 20.00251 * 7 6 5 9 9 C 1.52999 * 109.47275 * 260.00049 * 7 6 5 10 10 N 1.46505 * 109.46653 * 140.00269 * 7 6 5 11 11 C 1.34781 * 119.99419 * 204.99755 * 10 7 6 12 12 O 1.21279 * 120.00168 * 0.02562 * 11 10 7 13 13 C 1.50697 * 119.99673 * 180.02562 * 11 10 7 14 14 S 1.81004 * 109.47180 * 180.02562 * 13 11 10 15 15 C 1.76200 * 99.99912 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00112 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99787 * 179.97438 * 15 14 13 18 18 N 1.31631 * 119.99971 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99899 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46863 * 90.00569 * 19 17 15 21 21 H 1.48501 * 109.46858 * 210.00395 * 19 17 15 22 22 H 1.48498 * 109.47149 * 330.00291 * 19 17 15 23 23 C 1.38268 * 120.11230 * 359.97438 * 6 5 4 24 24 C 1.38137 * 120.05826 * 0.02562 * 23 6 5 25 25 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47195 * 300.00308 * 1 2 3 27 27 H 1.09000 * 109.46994 * 59.99845 * 1 2 3 28 28 H 1.08002 * 120.03267 * 0.02580 * 4 3 2 29 29 H 1.07999 * 119.97318 * 180.27444 * 5 4 3 30 30 H 1.08993 * 109.47143 * 180.02562 * 9 7 6 31 31 H 1.09005 * 109.47076 * 299.99857 * 9 7 6 32 32 H 1.08998 * 109.47119 * 60.00037 * 9 7 6 33 33 H 0.96992 * 120.00197 * 25.00202 * 10 7 6 34 34 H 1.09004 * 109.47564 * 300.00011 * 13 11 10 35 35 H 1.08996 * 109.47246 * 60.00099 * 13 11 10 36 36 H 0.96995 * 119.99892 * 179.97438 * 18 17 15 37 37 H 1.08007 * 119.96697 * 180.02562 * 23 6 5 38 38 H 1.07992 * 120.03165 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0059 6 6 3.3019 3.6758 -0.0054 7 6 3.9861 5.0186 -0.0107 8 1 5.0101 4.9031 -0.3658 9 6 3.9998 5.5896 1.4087 10 7 3.2616 5.9322 -0.8977 11 6 3.9038 6.9743 -1.4618 12 8 5.0815 7.1553 -1.2356 13 6 3.1585 7.9144 -2.3737 14 16 4.2864 9.1993 -2.9680 15 6 3.1846 10.1287 -3.9813 16 1 2.1519 9.8267 -4.0746 17 6 3.6437 11.2498 -4.6589 18 7 4.9022 11.6182 -4.5449 19 14 2.4758 12.2348 -5.7338 20 1 1.8313 13.2969 -4.9204 21 1 3.2347 12.8568 -6.8485 22 1 1.4332 11.3336 -6.2871 23 6 1.9211 3.6048 -0.0001 24 6 1.2915 2.3752 0.0053 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.0209 0.3800 -0.0014 29 1 5.1345 2.5750 -0.0108 30 1 4.4943 6.5609 1.4047 31 1 2.9758 5.7050 1.7638 32 1 4.5388 4.9098 2.0686 33 1 2.3198 5.7872 -1.0788 34 1 2.7618 7.3585 -3.2232 35 1 2.3370 8.3765 -1.8263 36 1 5.2231 12.4014 -5.0187 37 1 1.3342 4.5115 -0.0001 38 1 0.2130 2.3202 0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298502069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:30 Heat of formation + Delta-G solvation = -77.727193 kcal Electronic energy + Delta-G solvation = -20279.741987 eV Core-core repulsion = 17019.679247 eV Total energy + Delta-G solvation = -3260.062740 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.37417 -40.57208 -38.77038 -36.13310 -34.57777 -32.88824 -32.07519 -30.48343 -29.56895 -28.04531 -27.65078 -24.64522 -23.72974 -22.06635 -21.32282 -19.90031 -19.14664 -18.02477 -17.64249 -16.91744 -16.87306 -16.63607 -16.42200 -16.04555 -15.78925 -15.20566 -14.91108 -14.62356 -14.50415 -14.41174 -14.21453 -13.80749 -13.45081 -13.24582 -13.15694 -12.89170 -12.82413 -12.80016 -12.58245 -12.01042 -11.90884 -11.73354 -11.71234 -11.13645 -10.94542 -10.26829 -10.18384 -9.98256 -9.11641 -8.65747 -8.34002 -6.11880 0.34105 0.36619 1.27801 1.43029 1.47785 1.58202 1.62665 2.25837 2.29931 2.37940 2.76432 3.00093 3.32922 3.60988 3.79925 3.94204 3.98207 4.21205 4.28758 4.30550 4.37654 4.40922 4.43399 4.51326 4.54349 4.66307 4.74327 4.77988 4.93068 5.05123 5.19838 5.27131 5.34253 5.40221 5.42566 5.66836 5.75833 6.20515 6.42890 6.49966 7.07275 7.24484 8.75199 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.026316 B = 0.002731 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.735724 B =10250.863784 C =10954.141310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.115 3.885 4 C -0.159 4.159 5 C -0.073 4.073 6 C -0.133 4.133 7 C 0.189 3.811 8 H 0.076 0.924 9 C -0.152 4.152 10 N -0.709 5.709 11 C 0.536 3.464 12 O -0.562 6.562 13 C -0.130 4.130 14 S -0.150 6.150 15 C -0.546 4.546 16 H 0.083 0.917 17 C 0.012 3.988 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.258 1.258 23 C -0.075 4.075 24 C -0.204 4.204 25 H 0.117 0.883 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.412 0.588 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.271 0.729 37 H 0.142 0.858 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.206 -22.852 11.296 28.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.070 3.930 4 C -0.178 4.178 5 C -0.091 4.091 6 C -0.134 4.134 7 C 0.085 3.915 8 H 0.094 0.906 9 C -0.210 4.210 10 N -0.364 5.364 11 C 0.322 3.678 12 O -0.440 6.440 13 C -0.281 4.281 14 S 0.077 5.923 15 C -0.694 4.694 16 H 0.101 0.899 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.182 1.182 23 C -0.093 4.093 24 C -0.223 4.223 25 H 0.135 0.865 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.250 0.750 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.080 0.920 37 H 0.159 0.841 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.055 -22.653 11.637 27.380 hybrid contribution -2.088 0.646 -0.981 2.396 sum -12.143 -22.007 10.656 27.301 Atomic orbital electron populations 1.23342 0.76474 1.05545 1.02299 1.86053 1.23450 1.26877 1.88600 1.19281 0.92703 0.84780 0.96257 1.20597 0.91826 0.98894 1.06434 1.20992 1.00724 0.90651 0.96738 1.19746 0.94350 0.93706 1.05553 1.19691 0.95663 0.85632 0.90506 0.90551 1.22118 1.03062 1.00893 0.94972 1.45957 1.14474 1.27336 1.48603 1.20043 0.86811 0.81281 0.79649 1.90687 1.17563 1.73359 1.62350 1.23380 1.03120 0.99720 1.01913 1.85575 1.17427 1.29030 1.60258 1.23205 0.98263 1.14908 1.32991 0.89911 1.26139 0.97488 0.97743 0.97867 1.70184 1.16415 1.25889 1.42297 0.84947 0.77695 0.77996 0.77295 1.19279 1.20355 1.18185 1.20925 0.93488 0.98100 0.96792 1.21432 1.01220 0.91601 1.08034 0.86472 0.91555 0.91817 0.84168 0.84089 0.93961 0.91014 0.90056 0.75004 0.87386 0.87096 0.92007 0.84072 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -5.58 10.50 -92.47 -0.97 -6.56 16 3 C 0.12 2.04 6.69 22.51 0.15 2.19 16 4 C -0.16 -2.85 9.99 22.37 0.22 -2.63 16 5 C -0.07 -1.33 9.66 22.25 0.22 -1.12 16 6 C -0.13 -2.54 4.96 -19.85 -0.10 -2.64 16 7 C 0.19 4.44 2.77 44.25 0.12 4.57 16 8 H 0.08 2.13 7.43 -2.39 -0.02 2.11 16 9 C -0.15 -3.30 9.46 71.98 0.68 -2.62 16 10 N -0.71 -18.28 5.03 -446.09 -2.24 -20.52 16 11 C 0.54 19.80 7.81 87.66 0.68 20.49 16 12 O -0.56 -25.90 15.52 -3.03 -0.05 -25.95 16 13 C -0.13 -5.15 6.16 71.23 0.44 -4.71 16 14 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 15 C -0.55 -31.17 9.50 67.96 0.65 -30.53 16 16 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 17 C 0.01 0.70 5.49 84.86 0.47 1.17 16 18 N -0.91 -56.14 13.22 21.65 0.29 -55.85 16 19 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 23 C -0.07 -1.20 9.05 22.25 0.20 -1.00 16 24 C -0.20 -3.09 9.04 22.36 0.20 -2.89 16 25 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.42 7.65 -2.39 -0.02 0.40 16 27 H 0.06 0.45 7.67 -2.39 -0.02 0.43 16 28 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.14 2.23 8.03 -2.91 -0.02 2.21 16 30 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.41 7.94 6.86 -92.71 -0.64 7.30 16 34 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 35 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 36 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 37 H 0.14 1.73 6.91 -2.91 -0.02 1.71 16 38 H 0.15 1.52 6.30 -2.91 -0.02 1.50 16 Total: -1.00 -77.07 340.00 3.37 -73.70 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.43 Total: 17.56 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 5.05 Total: -18.46 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -1.96 Total: -76.37 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -1.02 Total: -32.50 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -77.07 3.37 -73.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298502069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.027 kcal (2) G-P(sol) polarization free energy of solvation -77.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds