Wall clock time and date at job start Tue Mar 31 2020 07:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35906 * 116.99725 * 2 1 4 4 C 1.38733 * 120.05420 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94709 * 179.97438 * 4 3 2 6 6 C 1.38269 * 120.05182 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.93996 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47374 * 339.99947 * 7 6 5 9 9 C 1.53006 * 109.47239 * 100.00084 * 7 6 5 10 10 N 1.46500 * 109.46896 * 219.99866 * 7 6 5 11 11 C 1.34779 * 119.99741 * 155.00439 * 10 7 6 12 12 O 1.21279 * 120.00369 * 359.97438 * 11 10 7 13 13 C 1.50708 * 119.99762 * 179.97438 * 11 10 7 14 14 S 1.81002 * 109.47063 * 179.97438 * 13 11 10 15 15 C 1.76200 * 99.99762 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00163 * 0.02562 * 15 14 13 17 17 C 1.38804 * 119.99866 * 179.97438 * 15 14 13 18 18 N 1.31630 * 119.99671 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 119.99833 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47389 * 60.00395 * 19 17 15 21 21 H 1.48506 * 109.47090 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47461 * 300.00183 * 19 17 15 23 23 C 1.38255 * 120.11235 * 0.27011 * 6 5 4 24 24 C 1.38143 * 120.05738 * 359.45703 * 23 6 5 25 25 H 1.08998 * 109.47059 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46996 * 300.00033 * 1 2 3 27 27 H 1.09001 * 109.46761 * 59.99645 * 1 2 3 28 28 H 1.08001 * 120.02793 * 359.95348 * 4 3 2 29 29 H 1.07999 * 119.97274 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.46801 * 179.97438 * 9 7 6 31 31 H 1.09001 * 109.46998 * 299.99373 * 9 7 6 32 32 H 1.09000 * 109.47050 * 59.99664 * 9 7 6 33 33 H 0.96997 * 120.00110 * 334.99708 * 10 7 6 34 34 H 1.08994 * 109.47136 * 300.00021 * 13 11 10 35 35 H 1.09002 * 109.46457 * 59.99935 * 13 11 10 36 36 H 0.97003 * 119.99794 * 179.97438 * 18 17 15 37 37 H 1.08001 * 119.97406 * 179.70468 * 23 6 5 38 38 H 1.08005 * 120.03008 * 180.27229 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3018 3.6759 -0.0016 7 6 3.9860 5.0186 -0.0028 8 1 5.0116 4.9041 0.3484 9 6 3.9939 5.5858 -1.4238 10 7 3.2653 5.9346 0.8847 11 6 3.9098 6.9782 1.4433 12 8 5.0865 7.1587 1.2117 13 6 3.1682 7.9209 2.3557 14 16 4.2986 9.2074 2.9418 15 6 3.2010 10.1396 3.9572 16 1 2.1689 9.8373 4.0562 17 6 3.6631 11.2619 4.6307 18 7 4.9212 11.6300 4.5104 19 14 2.4997 12.2497 5.7076 20 1 1.9640 11.3799 6.7855 21 1 3.2333 13.3908 6.3119 22 1 1.3772 12.7635 4.8824 23 6 1.9211 3.6048 0.0040 24 6 1.2915 2.3752 -0.0011 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.0209 0.3800 -0.0002 29 1 5.1345 2.5751 -0.0019 30 1 4.4884 6.5572 -1.4245 31 1 4.5302 4.9042 -2.0841 32 1 2.9684 5.7002 -1.7750 33 1 2.3242 5.7902 1.0701 34 1 2.3444 8.3815 1.8105 35 1 2.7751 7.3671 3.2083 36 1 5.2441 12.4145 4.9807 37 1 1.3342 4.5114 0.0084 38 1 0.2129 2.3203 -0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298502074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:32 Heat of formation + Delta-G solvation = -77.626022 kcal Electronic energy + Delta-G solvation = -20279.532581 eV Core-core repulsion = 17019.474228 eV Total energy + Delta-G solvation = -3260.058353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.37495 -40.57206 -38.77083 -36.13355 -34.57666 -32.88786 -32.07518 -30.48326 -29.56949 -28.04605 -27.64757 -24.64478 -23.73115 -22.06607 -21.32241 -19.89896 -19.14675 -18.02434 -17.64281 -16.91658 -16.87057 -16.63617 -16.42206 -16.04546 -15.78966 -15.20553 -14.91170 -14.62328 -14.50173 -14.41068 -14.21528 -13.80840 -13.45014 -13.24688 -13.15945 -12.86665 -12.82553 -12.79975 -12.59754 -12.01165 -11.90963 -11.73575 -11.72456 -11.12179 -10.94529 -10.27158 -10.18433 -9.98239 -9.11674 -8.65718 -8.33742 -6.11749 0.34091 0.36614 1.27706 1.44435 1.47507 1.57272 1.62665 2.25988 2.30051 2.37921 2.76403 3.00216 3.32982 3.61018 3.79879 3.94183 3.98190 4.21166 4.28720 4.30543 4.37652 4.40930 4.43422 4.51329 4.54347 4.66286 4.74318 4.77973 4.93027 5.05079 5.19811 5.27100 5.34211 5.40218 5.42327 5.66818 5.75816 6.20360 6.42885 6.49922 7.07333 7.24460 8.75207 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.026362 B = 0.002730 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.897659 B =10254.733150 C =10956.659037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.115 3.885 4 C -0.159 4.159 5 C -0.073 4.073 6 C -0.133 4.133 7 C 0.189 3.811 8 H 0.076 0.924 9 C -0.152 4.152 10 N -0.709 5.709 11 C 0.536 3.464 12 O -0.562 6.562 13 C -0.130 4.130 14 S -0.150 6.150 15 C -0.547 4.547 16 H 0.083 0.917 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.262 1.262 21 H -0.279 1.279 22 H -0.262 1.262 23 C -0.075 4.075 24 C -0.204 4.204 25 H 0.117 0.883 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.412 0.588 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.271 0.729 37 H 0.142 0.858 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.250 -22.874 -11.191 28.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.070 3.930 4 C -0.177 4.177 5 C -0.091 4.091 6 C -0.134 4.134 7 C 0.085 3.915 8 H 0.095 0.905 9 C -0.210 4.210 10 N -0.364 5.364 11 C 0.322 3.678 12 O -0.440 6.440 13 C -0.281 4.281 14 S 0.077 5.923 15 C -0.695 4.695 16 H 0.101 0.899 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.187 1.187 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.093 4.093 24 C -0.223 4.223 25 H 0.135 0.865 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.250 0.750 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.159 0.841 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.098 -22.671 -11.544 27.372 hybrid contribution -2.090 0.637 0.994 2.400 sum -12.188 -22.035 -10.550 27.302 Atomic orbital electron populations 1.23342 0.76474 1.05545 1.02298 1.86053 1.23451 1.26876 1.88601 1.19279 0.92702 0.84780 0.96258 1.20596 0.91827 0.98895 1.06429 1.20992 1.00722 0.90651 0.96740 1.19743 0.94349 0.93707 1.05553 1.19691 0.95719 0.85595 0.90490 0.90550 1.22120 1.03058 1.00909 0.94955 1.45957 1.14571 1.27162 1.48683 1.20046 0.86775 0.81306 0.79660 1.90687 1.17611 1.73461 1.62200 1.23382 1.03142 0.99687 1.01926 1.85571 1.17521 1.28788 1.60379 1.23177 0.98399 1.14822 1.33088 0.89901 1.26136 0.97460 0.97753 0.97862 1.70180 1.16392 1.25883 1.42310 0.85003 0.77713 0.77272 0.78000 1.18689 1.20431 1.18608 1.20921 0.93489 0.98100 0.96801 1.21435 1.01221 0.91600 1.08031 0.86471 0.91812 0.91560 0.84169 0.84087 0.93961 0.90056 0.91018 0.75001 0.87103 0.87377 0.92001 0.84077 0.83162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -5.58 10.50 -92.49 -0.97 -6.55 16 3 C 0.12 2.04 6.69 22.51 0.15 2.19 16 4 C -0.16 -2.85 9.99 22.37 0.22 -2.62 16 5 C -0.07 -1.33 9.66 22.25 0.22 -1.12 16 6 C -0.13 -2.54 4.96 -19.85 -0.10 -2.64 16 7 C 0.19 4.44 2.78 44.25 0.12 4.57 16 8 H 0.08 2.13 7.44 -2.39 -0.02 2.11 16 9 C -0.15 -3.30 9.46 71.98 0.68 -2.62 16 10 N -0.71 -18.28 5.03 -446.08 -2.24 -20.52 16 11 C 0.54 19.80 7.81 87.66 0.68 20.49 16 12 O -0.56 -25.91 15.52 -3.03 -0.05 -25.95 16 13 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 14 S -0.15 -8.33 20.57 -56.49 -1.16 -9.50 16 15 C -0.55 -31.25 9.50 67.96 0.65 -30.60 16 16 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 17 C 0.01 0.72 5.49 84.86 0.47 1.19 16 18 N -0.91 -56.15 13.22 21.65 0.29 -55.86 16 19 Si 1.00 43.54 29.55 68.60 2.03 45.56 16 20 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 22 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 23 C -0.07 -1.21 9.05 22.25 0.20 -1.00 16 24 C -0.20 -3.09 9.04 22.36 0.20 -2.89 16 25 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.06 0.45 7.66 -2.39 -0.02 0.43 16 27 H 0.07 0.42 7.66 -2.39 -0.02 0.40 16 28 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 29 H 0.14 2.23 8.03 -2.91 -0.02 2.21 16 30 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.41 7.93 6.85 -92.71 -0.64 7.30 16 34 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 35 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 36 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 37 H 0.14 1.73 6.89 -2.91 -0.02 1.71 16 38 H 0.15 1.52 6.30 -2.91 -0.02 1.50 16 Total: -1.00 -77.05 339.97 3.37 -73.68 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.44 Total: 17.66 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 5.05 Total: -18.52 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -1.96 Total: -76.38 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -1.02 Total: -32.51 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.50 kcal Total: -77.05 3.37 -73.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298502074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.949 kcal (2) G-P(sol) polarization free energy of solvation -77.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds