Wall clock time and date at job start Tue Mar 31 2020 07:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47083 * 2 1 4 4 N 1.46502 * 109.46710 * 180.02562 * 3 2 1 5 5 C 1.37091 * 119.99713 * 263.42434 * 4 3 2 6 6 H 1.08002 * 120.00151 * 188.11647 * 5 4 3 7 7 C 1.38947 * 120.00406 * 8.12902 * 5 4 3 8 8 N 1.31417 * 119.99937 * 25.93547 * 7 5 4 9 9 Si 1.86795 * 120.00317 * 205.94594 * 7 5 4 10 10 H 1.48506 * 109.47392 * 84.97921 * 9 7 5 11 11 H 1.48500 * 109.47181 * 204.98155 * 9 7 5 12 12 H 1.48497 * 109.47053 * 324.98301 * 9 7 5 13 13 C 1.34779 * 120.00157 * 83.43494 * 4 3 2 14 14 O 1.21291 * 119.99751 * 179.97438 * 13 4 3 15 15 C 1.50701 * 120.00122 * 359.97438 * 13 4 3 16 16 C 1.52995 * 109.47475 * 180.02562 * 15 13 4 17 17 C 1.50701 * 109.47475 * 180.02562 * 16 15 13 18 18 O 1.21447 * 119.99537 * 0.02562 * 17 16 15 19 19 C 1.41229 * 120.00201 * 180.02562 * 17 16 15 20 20 C 1.37180 * 125.48349 * 180.02562 * 19 17 16 21 21 C 1.37203 * 113.24579 * 179.97438 * 20 19 17 22 22 C 1.34025 * 115.14499 * 0.02562 * 21 20 19 23 23 S 1.70614 * 110.99922 * 359.72237 * 22 21 20 24 24 H 1.09000 * 109.46590 * 300.00137 * 1 2 3 25 25 H 1.09001 * 109.46957 * 59.99860 * 1 2 3 26 26 H 1.08995 * 109.47412 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46590 * 239.99863 * 2 1 3 28 28 H 1.09001 * 109.46957 * 120.00140 * 2 1 3 29 29 H 1.08997 * 109.47505 * 59.99895 * 3 2 1 30 30 H 1.09007 * 109.46674 * 299.99788 * 3 2 1 31 31 H 0.97000 * 120.00174 * 180.02562 * 8 7 5 32 32 H 1.09009 * 109.46740 * 59.99958 * 15 13 4 33 33 H 1.08994 * 109.47128 * 300.00819 * 15 13 4 34 34 H 1.08997 * 109.47504 * 300.01036 * 16 15 13 35 35 H 1.09008 * 109.46694 * 60.00352 * 16 15 13 36 36 H 1.08003 * 123.37722 * 359.97438 * 20 19 17 37 37 H 1.07995 * 122.42825 * 180.02562 * 21 20 19 38 38 H 1.08001 * 124.49406 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1910 1.5781 1.1786 6 1 5.2629 1.7098 1.1678 7 6 3.5073 1.5461 2.3878 8 7 2.3627 0.9067 2.4787 9 14 4.2147 2.4120 3.8841 10 1 3.8192 3.8432 3.8609 11 1 3.6916 1.7738 5.1187 12 1 5.6958 2.3075 3.8622 13 6 4.1785 1.3091 -1.1605 14 8 5.3914 1.3095 -1.1610 15 6 3.4245 1.1595 -2.4567 16 6 4.4182 1.0262 -3.6123 17 6 3.6642 0.8772 -4.9086 18 8 2.4498 0.8782 -4.9082 19 6 4.3699 0.7366 -6.1239 20 6 3.8001 0.5945 -7.3637 21 6 4.7220 0.4779 -8.3731 22 6 6.0032 0.5213 -7.9821 23 16 6.1202 0.7227 -6.2920 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9564 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 1.8852 0.8846 3.3227 32 1 2.7975 2.0370 -2.6156 33 1 2.7981 0.2687 -2.4119 34 1 5.0451 1.9167 -3.6572 35 1 5.0449 0.1485 -3.4532 36 1 2.7329 0.5764 -7.5286 37 1 4.4360 0.3596 -9.4078 38 1 6.8492 0.4436 -8.6490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299105208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:50 Heat of formation + Delta-G solvation = -36.931032 kcal Electronic energy + Delta-G solvation = -21196.931640 eV Core-core repulsion = 17938.637954 eV Total energy + Delta-G solvation = -3258.293685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.78148 -38.51192 -37.41346 -35.32040 -32.71615 -31.98743 -31.24307 -30.26944 -26.73346 -25.63094 -24.66797 -23.42104 -20.90964 -20.57092 -19.36980 -18.53970 -17.64355 -16.82594 -16.04410 -15.99977 -15.52303 -14.83829 -14.28563 -14.10109 -14.02881 -13.94469 -13.57972 -13.07165 -12.97777 -12.65933 -12.49213 -12.20782 -12.09188 -11.65162 -11.44622 -11.33672 -11.02012 -10.90136 -10.79964 -10.73258 -10.33773 -10.25999 -10.03491 -9.70129 -9.55703 -9.04846 -8.81449 -8.77994 -8.31948 -7.70081 -6.32506 -3.72999 0.17482 1.36250 1.76180 2.07920 2.91323 3.18164 3.28404 3.32736 3.92587 4.08369 4.25928 4.73142 4.98077 5.09462 5.12609 5.18208 5.24369 5.53752 5.54647 5.76212 5.85526 5.93646 6.05544 6.07450 6.14520 6.18327 6.26669 6.42932 6.44259 6.51909 6.73601 6.88945 6.93486 7.35803 7.52412 7.60102 7.77598 8.13543 8.55105 9.22166 9.49596 10.04707 10.67804 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.025327 B = 0.003581 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.272076 B = 7816.937227 C = 8769.271121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 C 0.125 3.875 4 N -0.440 5.440 5 C -0.309 4.309 6 H 0.104 0.896 7 C 0.031 3.969 8 N -0.862 5.862 9 Si 0.916 3.084 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.271 1.271 13 C 0.440 3.560 14 O -0.599 6.599 15 C -0.118 4.118 16 C -0.148 4.148 17 C 0.419 3.581 18 O -0.452 6.452 19 C -0.298 4.298 20 C -0.054 4.054 21 C -0.159 4.159 22 C -0.237 4.237 23 S 0.243 5.757 24 H 0.053 0.947 25 H 0.038 0.962 26 H 0.040 0.960 27 H 0.031 0.969 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.033 0.967 31 H 0.266 0.734 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.343 -0.879 -16.652 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.163 4.163 3 C 0.001 3.999 4 N -0.158 5.158 5 C -0.437 4.437 6 H 0.122 0.878 7 C -0.172 4.172 8 N -0.501 5.501 9 Si 0.743 3.257 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.196 1.196 13 C 0.228 3.772 14 O -0.485 6.485 15 C -0.158 4.158 16 C -0.186 4.186 17 C 0.298 3.702 18 O -0.329 6.329 19 C -0.417 4.417 20 C -0.087 4.087 21 C -0.190 4.190 22 C -0.375 4.375 23 S 0.511 5.489 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.169 0.831 37 H 0.160 0.840 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.397 -0.787 -15.452 15.657 hybrid contribution -0.986 0.171 -0.450 1.097 sum 1.411 -0.616 -15.902 15.977 Atomic orbital electron populations 1.21603 0.97287 1.00054 1.00599 1.21883 0.94046 0.98283 1.02123 1.21528 0.80605 0.96934 1.00826 1.43810 1.05366 1.60997 1.05579 1.19713 0.94252 1.47484 0.82239 0.87834 1.25169 0.96494 0.96725 0.98795 1.70126 1.16741 1.36675 1.26554 0.86100 0.79518 0.79739 0.80319 1.20446 1.21204 1.19552 1.19894 0.87904 0.84262 0.85097 1.90487 1.13950 1.57009 1.87056 1.21327 0.97956 1.03766 0.92768 1.21767 0.99508 1.05441 0.91882 1.20372 0.88975 0.71947 0.88912 1.90575 1.15531 1.37592 1.89209 1.24346 0.98650 1.18927 0.99762 1.21024 1.01579 0.95807 0.90318 1.20036 0.91749 1.06063 1.01113 1.25591 1.01962 1.08026 1.01895 1.83410 1.01852 1.64200 0.99395 0.92767 0.94312 0.94104 0.95008 0.88273 0.88096 0.94854 0.92321 0.90164 0.89646 0.87941 0.87887 0.83064 0.84000 0.81470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.91 37.16 0.37 -2.06 16 2 C -0.13 -2.64 5.67 -26.73 -0.15 -2.80 16 3 C 0.12 2.82 4.35 -4.04 -0.02 2.81 16 4 N -0.44 -11.26 2.64 -114.81 -0.30 -11.56 16 5 C -0.31 -8.54 9.42 -14.94 -0.14 -8.68 16 6 H 0.10 3.03 7.31 -52.49 -0.38 2.65 16 7 C 0.03 0.81 4.88 -17.47 -0.09 0.72 16 8 N -0.86 -21.84 8.70 55.50 0.48 -21.36 16 9 Si 0.92 20.41 29.62 -169.99 -5.04 15.38 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 C 0.44 10.74 7.58 -10.98 -0.08 10.65 16 14 O -0.60 -16.22 15.57 5.55 0.09 -16.14 16 15 C -0.12 -2.30 3.60 -27.89 -0.10 -2.40 16 16 C -0.15 -2.46 4.28 -27.89 -0.12 -2.58 16 17 C 0.42 6.45 6.93 -33.17 -0.23 6.22 16 18 O -0.45 -7.99 16.36 5.41 0.09 -7.90 16 19 C -0.30 -3.82 6.23 -38.83 -0.24 -4.06 16 20 C -0.05 -0.60 9.95 -40.34 -0.40 -1.00 16 21 C -0.16 -1.42 10.14 -41.44 -0.42 -1.84 16 22 C -0.24 -1.99 10.93 29.25 0.32 -1.67 16 23 S 0.24 2.49 22.42 -107.50 -2.41 0.08 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.03 0.65 6.44 -51.93 -0.33 0.32 16 28 H 0.10 2.40 6.40 -51.93 -0.33 2.07 16 29 H 0.10 2.45 5.83 -51.93 -0.30 2.14 16 30 H 0.03 0.68 6.72 -51.92 -0.35 0.33 16 31 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 32 H 0.08 1.50 7.38 -51.92 -0.38 1.12 16 33 H 0.09 1.65 6.35 -51.93 -0.33 1.32 16 34 H 0.10 1.66 8.10 -51.93 -0.42 1.24 16 35 H 0.10 1.69 8.10 -51.92 -0.42 1.27 16 36 H 0.15 1.59 8.02 -52.48 -0.42 1.17 16 37 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 330.00 15.07 4.97 4.97 Total: -1.00 -30.48 330.00 -8.35 -38.83 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -4.93 Total: 4.39 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -1.30 Total: -6.69 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.18 Total: -32.92 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.17 Total: -24.03 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.04 Total: 15.38 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.41 Total: 0.08 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.48 -8.35 -38.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299105208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.895 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds