Wall clock time and date at job start Tue Mar 31 2020 07:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47083 * 2 1 4 4 N 1.46502 * 109.46710 * 180.02562 * 3 2 1 5 5 C 1.37091 * 119.99713 * 263.42434 * 4 3 2 6 6 H 1.08002 * 120.00151 * 188.11647 * 5 4 3 7 7 C 1.38947 * 120.00406 * 8.12902 * 5 4 3 8 8 N 1.31417 * 119.99937 * 25.93547 * 7 5 4 9 9 Si 1.86795 * 120.00317 * 205.94594 * 7 5 4 10 10 H 1.48506 * 109.47392 * 84.97921 * 9 7 5 11 11 H 1.48500 * 109.47181 * 204.98155 * 9 7 5 12 12 H 1.48497 * 109.47053 * 324.98301 * 9 7 5 13 13 C 1.34779 * 120.00157 * 83.43494 * 4 3 2 14 14 O 1.21291 * 119.99751 * 179.97438 * 13 4 3 15 15 C 1.50701 * 120.00122 * 359.97438 * 13 4 3 16 16 C 1.52995 * 109.47475 * 180.02562 * 15 13 4 17 17 C 1.50701 * 109.47475 * 180.02562 * 16 15 13 18 18 O 1.21447 * 119.99537 * 0.02562 * 17 16 15 19 19 C 1.41229 * 120.00201 * 180.02562 * 17 16 15 20 20 C 1.37180 * 125.48349 * 180.02562 * 19 17 16 21 21 C 1.37203 * 113.24579 * 179.97438 * 20 19 17 22 22 C 1.34025 * 115.14499 * 0.02562 * 21 20 19 23 23 S 1.70614 * 110.99922 * 359.72237 * 22 21 20 24 24 H 1.09000 * 109.46590 * 300.00137 * 1 2 3 25 25 H 1.09001 * 109.46957 * 59.99860 * 1 2 3 26 26 H 1.08995 * 109.47412 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46590 * 239.99863 * 2 1 3 28 28 H 1.09001 * 109.46957 * 120.00140 * 2 1 3 29 29 H 1.08997 * 109.47505 * 59.99895 * 3 2 1 30 30 H 1.09007 * 109.46674 * 299.99788 * 3 2 1 31 31 H 0.97000 * 120.00174 * 180.02562 * 8 7 5 32 32 H 1.09009 * 109.46740 * 59.99958 * 15 13 4 33 33 H 1.08994 * 109.47128 * 300.00819 * 15 13 4 34 34 H 1.08997 * 109.47504 * 300.01036 * 16 15 13 35 35 H 1.09008 * 109.46694 * 60.00352 * 16 15 13 36 36 H 1.08003 * 123.37722 * 359.97438 * 20 19 17 37 37 H 1.07995 * 122.42825 * 180.02562 * 21 20 19 38 38 H 1.08001 * 124.49406 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1910 1.5781 1.1786 6 1 5.2629 1.7098 1.1678 7 6 3.5073 1.5461 2.3878 8 7 2.3627 0.9067 2.4787 9 14 4.2147 2.4120 3.8841 10 1 3.8192 3.8432 3.8609 11 1 3.6916 1.7738 5.1187 12 1 5.6958 2.3075 3.8622 13 6 4.1785 1.3091 -1.1605 14 8 5.3914 1.3095 -1.1610 15 6 3.4245 1.1595 -2.4567 16 6 4.4182 1.0262 -3.6123 17 6 3.6642 0.8772 -4.9086 18 8 2.4498 0.8782 -4.9082 19 6 4.3699 0.7366 -6.1239 20 6 3.8001 0.5945 -7.3637 21 6 4.7220 0.4779 -8.3731 22 6 6.0032 0.5213 -7.9821 23 16 6.1202 0.7227 -6.2920 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9564 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 1.8852 0.8846 3.3227 32 1 2.7975 2.0370 -2.6156 33 1 2.7981 0.2687 -2.4119 34 1 5.0451 1.9167 -3.6572 35 1 5.0449 0.1485 -3.4532 36 1 2.7329 0.5764 -7.5286 37 1 4.4360 0.3596 -9.4078 38 1 6.8492 0.4436 -8.6490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299105208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:50 Heat of formation + Delta-G solvation = -53.474320 kcal Electronic energy + Delta-G solvation = -21197.649011 eV Core-core repulsion = 17938.637954 eV Total energy + Delta-G solvation = -3259.011056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.06683 -40.25183 -38.30139 -37.23780 -34.43605 -33.58463 -33.12594 -31.27088 -28.23746 -27.16532 -26.15747 -24.81439 -22.41846 -21.90661 -20.46522 -20.05831 -18.97770 -18.67752 -17.71355 -16.93311 -16.85981 -16.51953 -15.93443 -15.63920 -15.57842 -15.30272 -15.01787 -14.40156 -14.23968 -13.87112 -13.70368 -13.67523 -13.41058 -13.14809 -13.09483 -12.93113 -12.68408 -12.48040 -12.28520 -12.10389 -12.03719 -11.90493 -11.78993 -11.32757 -10.92425 -10.74698 -10.29937 -9.88690 -9.67310 -9.56037 -8.31529 -5.80870 -0.71127 0.54899 0.99724 1.19337 1.37442 1.44293 1.54352 1.94224 2.02192 2.29208 2.88523 3.07266 3.32604 3.80823 4.08504 4.09330 4.11326 4.28994 4.33618 4.44208 4.52171 4.58241 4.65317 4.68732 4.87040 4.91224 4.97391 5.03439 5.10615 5.23053 5.25212 5.36372 5.37054 5.48751 5.60946 5.92159 6.09670 6.43462 6.55476 7.20488 7.52637 8.08310 8.66424 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.025327 B = 0.003581 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.272076 B = 7816.937227 C = 8769.271121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.118 4.118 3 C 0.128 3.872 4 N -0.452 5.452 5 C -0.355 4.355 6 H 0.074 0.926 7 C 0.007 3.993 8 N -0.863 5.863 9 Si 0.979 3.021 10 H -0.271 1.271 11 H -0.273 1.273 12 H -0.279 1.279 13 C 0.427 3.573 14 O -0.635 6.635 15 C -0.104 4.104 16 C -0.144 4.144 17 C 0.431 3.569 18 O -0.485 6.485 19 C -0.341 4.341 20 C -0.043 4.043 21 C -0.166 4.166 22 C -0.211 4.211 23 S 0.240 5.760 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.273 0.727 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.153 0.847 37 H 0.173 0.827 38 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.938 -0.896 -18.307 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.156 4.156 3 C 0.005 3.995 4 N -0.169 5.169 5 C -0.482 4.482 6 H 0.092 0.908 7 C -0.197 4.197 8 N -0.500 5.500 9 Si 0.803 3.197 10 H -0.197 1.197 11 H -0.198 1.198 12 H -0.204 1.204 13 C 0.217 3.783 14 O -0.524 6.524 15 C -0.144 4.144 16 C -0.182 4.182 17 C 0.312 3.688 18 O -0.365 6.365 19 C -0.459 4.459 20 C -0.078 4.078 21 C -0.196 4.196 22 C -0.349 4.349 23 S 0.508 5.492 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.171 0.829 37 H 0.190 0.810 38 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 1.966 -0.814 -17.105 17.237 hybrid contribution -0.803 0.139 0.012 0.815 sum 1.163 -0.676 -17.093 17.146 Atomic orbital electron populations 1.21517 0.94324 1.01455 1.01310 1.21739 0.96550 0.96774 1.00529 1.21572 0.79088 0.97977 1.00897 1.44047 1.06536 1.60847 1.05459 1.19584 0.93529 1.51043 0.84033 0.90829 1.25839 0.96950 0.96269 1.00632 1.70202 1.16893 1.35445 1.27471 0.85179 0.78315 0.78852 0.77327 1.19650 1.19837 1.20376 1.20713 0.87869 0.83337 0.86333 1.90443 1.15648 1.58494 1.87796 1.21204 0.98093 1.04088 0.91053 1.21713 0.99000 1.05520 0.91928 1.20195 0.88466 0.70959 0.89186 1.90553 1.16514 1.39913 1.89550 1.24111 1.00061 1.22559 0.99155 1.21288 1.02286 0.93933 0.90286 1.20304 0.91360 1.05937 1.02013 1.26040 1.02995 1.04910 1.00939 1.83467 1.00109 1.64268 1.01331 0.93124 0.92472 0.92397 0.94894 0.91502 0.89798 0.92749 0.91651 0.89313 0.89421 0.87816 0.88085 0.82902 0.81008 0.78072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 9.91 71.99 0.71 -3.62 16 2 C -0.12 -4.96 5.67 30.60 0.17 -4.79 16 3 C 0.13 5.82 4.35 86.38 0.38 6.20 16 4 N -0.45 -23.85 2.64 -635.53 -1.68 -25.53 16 5 C -0.35 -20.32 9.42 84.04 0.79 -19.53 16 6 H 0.07 4.56 7.31 -2.91 -0.02 4.54 16 7 C 0.01 0.35 4.88 84.92 0.41 0.77 16 8 N -0.86 -43.85 8.70 21.66 0.19 -43.66 16 9 Si 0.98 42.15 29.62 68.60 2.03 44.19 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 13 C 0.43 21.62 7.58 87.66 0.66 22.28 16 14 O -0.63 -35.98 15.57 -3.06 -0.05 -36.03 16 15 C -0.10 -4.14 3.60 29.85 0.11 -4.04 16 16 C -0.14 -4.88 4.28 29.85 0.13 -4.75 16 17 C 0.43 13.32 6.93 26.42 0.18 13.50 16 18 O -0.48 -17.22 16.36 -3.55 -0.06 -17.28 16 19 C -0.34 -8.48 6.23 22.76 0.14 -8.34 16 20 C -0.04 -0.89 9.95 21.78 0.22 -0.68 16 21 C -0.17 -2.42 10.14 21.07 0.21 -2.21 16 22 C -0.21 -2.81 10.93 66.86 0.73 -2.08 16 23 S 0.24 4.57 22.42 -56.49 -1.27 3.31 16 24 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.03 1.35 6.44 -2.39 -0.02 1.34 16 28 H 0.07 3.27 6.40 -2.39 -0.02 3.26 16 29 H 0.08 4.10 5.83 -2.39 -0.01 4.09 16 30 H 0.05 2.21 6.72 -2.38 -0.02 2.20 16 31 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 32 H 0.09 3.35 7.38 -2.38 -0.02 3.33 16 33 H 0.09 3.43 6.35 -2.39 -0.02 3.42 16 34 H 0.10 3.46 8.10 -2.39 -0.02 3.44 16 35 H 0.10 3.44 8.10 -2.38 -0.02 3.42 16 36 H 0.15 3.02 8.02 -2.91 -0.02 3.00 16 37 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.20 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -67.92 330.00 5.09 -62.83 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 1.07 Total: 19.46 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 4.85 Total: -7.28 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -1.49 Total: -69.19 kcal Atomic # 8 Polarization: -53.20 SS G_CDS: -0.11 Total: -53.31 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 4.57 SS G_CDS: -1.27 Total: 3.31 kcal Total: -67.92 5.09 -62.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299105208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.351 kcal (2) G-P(sol) polarization free energy of solvation -67.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds