Wall clock time and date at job start Tue Mar 31 2020 07:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47138 * 2 1 4 4 C 1.50700 * 109.47010 * 120.00097 * 2 1 3 5 5 C 1.34506 * 125.79137 * 259.99667 * 4 2 1 6 6 C 1.41380 * 106.84289 * 180.02562 * 5 4 2 7 7 C 1.34517 * 106.84142 * 0.02562 * 6 5 4 8 8 O 1.34298 * 108.41886 * 359.97438 * 7 6 5 9 9 N 1.46502 * 109.47156 * 240.00221 * 2 1 3 10 10 C 1.34769 * 120.00267 * 119.99702 * 9 2 1 11 11 O 1.21282 * 120.00193 * 3.81539 * 10 9 2 12 12 C 1.50706 * 120.00189 * 183.80498 * 10 9 2 13 13 S 1.80998 * 109.47180 * 187.65184 * 12 10 9 14 14 C 1.76197 * 99.99946 * 180.02562 * 13 12 10 15 15 H 1.08003 * 120.00296 * 0.02562 * 14 13 12 16 16 C 1.38800 * 120.00165 * 180.02562 * 14 13 12 17 17 N 1.31632 * 120.00046 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00005 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47271 * 89.99748 * 18 16 14 20 20 H 1.48506 * 109.46609 * 209.99676 * 18 16 14 21 21 H 1.48501 * 109.47160 * 329.99352 * 18 16 14 22 22 C 1.46506 * 119.99494 * 300.00259 * 9 2 1 23 23 C 1.52999 * 117.49502 * 131.43655 * 22 9 2 24 24 C 1.52999 * 117.50047 * 62.77774 * 22 9 2 25 25 H 1.09002 * 109.46624 * 300.00334 * 1 2 3 26 26 H 1.08997 * 109.47033 * 59.99482 * 1 2 3 27 27 H 1.08991 * 109.47319 * 179.97438 * 1 2 3 28 28 H 1.08005 * 126.57885 * 359.97438 * 5 4 2 29 29 H 1.08001 * 126.58445 * 179.97438 * 6 5 4 30 30 H 1.07997 * 125.79029 * 179.97438 * 7 6 5 31 31 H 1.09003 * 109.47022 * 307.65673 * 12 10 9 32 32 H 1.08999 * 109.46561 * 67.65415 * 12 10 9 33 33 H 0.96994 * 119.99968 * 180.02562 * 17 16 14 34 34 H 1.08998 * 115.54748 * 277.09663 * 22 9 2 35 35 H 1.09001 * 117.50265 * 359.97438 * 23 22 9 36 36 H 1.09001 * 117.49895 * 145.02018 * 23 22 9 37 37 H 1.09000 * 117.49423 * 214.97702 * 24 22 9 38 38 H 1.08996 * 117.49804 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.4732 -0.1192 2.3553 6 6 2.8443 -1.1544 3.2438 7 6 2.6085 -2.3164 2.6086 8 8 2.1166 -2.0414 1.3896 9 7 2.0184 -0.6906 -1.1962 10 6 2.7931 -0.0356 -2.0834 11 8 3.1433 1.1034 -1.8579 12 6 3.2246 -0.7186 -3.3556 13 16 4.4264 0.3217 -4.2212 14 6 4.7486 -0.6889 -5.6282 15 1 4.2465 -1.6389 -5.7371 16 6 5.6475 -0.2640 -6.5967 17 7 6.2591 0.8941 -6.4643 18 14 5.9885 -1.3351 -8.0886 19 1 5.0369 -0.9887 -9.1747 20 1 7.3789 -1.1041 -8.5564 21 1 5.8210 -2.7641 -7.7208 22 6 1.6643 -2.0932 -1.4280 23 6 1.1339 -2.4681 -2.8133 24 6 0.1828 -2.4263 -1.6146 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 2.5331 0.9427 2.5433 29 1 3.2417 -1.0352 4.2410 30 1 2.7849 -3.3031 3.0106 31 1 3.6814 -1.6788 -3.1155 32 1 2.3561 -0.8790 -3.9943 33 1 6.8870 1.1911 -7.1412 34 1 2.2838 -2.8260 -0.9110 35 1 1.0479 -1.6713 -3.5520 36 1 1.4039 -3.4479 -3.2074 37 1 -0.1724 -3.3785 -1.2206 38 1 -0.5286 -1.6020 -1.5645 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299134614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:17 Heat of formation + Delta-G solvation = 1.641028 kcal Electronic energy + Delta-G solvation = -21592.728084 eV Core-core repulsion = 18336.107009 eV Total energy + Delta-G solvation = -3256.621075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.51988 -41.26717 -38.45869 -35.72089 -34.58250 -33.86948 -32.73874 -30.43752 -29.43590 -27.66754 -24.63629 -23.96937 -23.22553 -22.55528 -21.63928 -20.47353 -19.63388 -18.37849 -17.90548 -17.40343 -16.88142 -16.82378 -16.69194 -16.04177 -15.62884 -15.58359 -14.89212 -14.63880 -14.26666 -14.12738 -13.98177 -13.71717 -13.53961 -13.29474 -13.16861 -12.90513 -12.77526 -12.64219 -12.49944 -12.05274 -11.71561 -11.58218 -11.46798 -11.13154 -10.84713 -10.79542 -10.24187 -9.90539 -9.41103 -8.67546 -8.34221 -6.12887 0.74228 1.23356 1.41538 1.43042 1.46843 1.55342 1.69679 1.96876 2.14388 2.27519 2.72375 3.00053 3.19613 3.49060 3.68118 3.84642 3.92976 4.00730 4.08074 4.12816 4.20982 4.30754 4.35229 4.46009 4.61139 4.77354 4.78135 4.87952 4.94070 4.98895 5.06604 5.13498 5.22157 5.24930 5.38590 5.42137 5.60982 6.15826 6.20544 6.22531 7.02388 7.06926 8.75217 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023361 B = 0.003893 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.284429 B = 7190.504196 C = 7508.996113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.220 3.780 3 H 0.104 0.896 4 C -0.031 4.031 5 C -0.218 4.218 6 C -0.228 4.228 7 C -0.041 4.041 8 O -0.174 6.174 9 N -0.577 5.577 10 C 0.537 3.463 11 O -0.561 6.561 12 C -0.118 4.118 13 S -0.158 6.158 14 C -0.543 4.543 15 H 0.083 0.917 16 C 0.014 3.986 17 N -0.912 5.912 18 Si 0.999 3.001 19 H -0.267 1.267 20 H -0.278 1.278 21 H -0.257 1.257 22 C 0.048 3.952 23 C -0.187 4.187 24 C -0.156 4.156 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.151 0.849 29 H 0.167 0.833 30 H 0.239 0.761 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.271 0.729 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.412 -10.956 16.728 24.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.116 3.884 3 H 0.122 0.878 4 C -0.082 4.082 5 C -0.237 4.237 6 C -0.246 4.246 7 C -0.108 4.108 8 O -0.070 6.070 9 N -0.310 5.310 10 C 0.325 3.675 11 O -0.439 6.439 12 C -0.269 4.269 13 S 0.069 5.931 14 C -0.690 4.690 15 H 0.101 0.899 16 C -0.190 4.190 17 N -0.548 5.548 18 Si 0.820 3.180 19 H -0.192 1.192 20 H -0.203 1.203 21 H -0.181 1.181 22 C -0.056 4.056 23 C -0.224 4.224 24 C -0.193 4.193 25 H 0.104 0.896 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.169 0.831 29 H 0.185 0.815 30 H 0.255 0.745 31 H 0.119 0.881 32 H 0.134 0.866 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.109 0.891 36 H 0.141 0.859 37 H 0.146 0.854 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.767 -9.412 16.845 23.703 hybrid contribution 0.336 -1.051 -0.909 1.430 sum -13.431 -10.463 15.935 23.320 Atomic orbital electron populations 1.22417 0.90974 1.04736 1.03626 1.19638 0.96133 0.94833 0.77750 0.87793 1.22663 1.06137 0.81366 0.98074 1.21881 1.05760 1.01548 0.94558 1.22127 1.07793 0.91984 1.02739 1.24845 1.01235 1.01863 0.82850 1.84040 1.65102 1.23953 1.33870 1.47431 1.50133 1.12003 1.21460 1.20261 0.76939 0.85653 0.84617 1.90672 1.55869 1.19915 1.77424 1.23613 1.03582 1.02928 0.96775 1.85555 1.52842 1.29878 1.24775 1.23162 1.30597 1.07550 1.07733 0.89881 1.26126 0.94388 0.96875 1.01639 1.70189 1.27314 1.21284 1.36055 0.84956 0.77681 0.78473 0.76889 1.19221 1.20342 1.18099 1.21842 0.99356 0.81888 1.02489 1.23612 1.03668 1.04146 0.90970 1.23662 0.90917 1.04784 0.99947 0.89551 0.91377 0.89266 0.83117 0.81512 0.74538 0.88134 0.86597 0.92013 0.86024 0.89089 0.85938 0.85382 0.87113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 8.02 71.98 0.58 -2.42 16 2 C 0.22 5.77 3.10 44.25 0.14 5.90 16 3 H 0.10 3.20 6.90 -2.39 -0.02 3.19 16 4 C -0.03 -0.78 6.08 24.83 0.15 -0.63 16 5 C -0.22 -5.13 10.80 22.19 0.24 -4.89 16 6 C -0.23 -4.37 10.91 22.19 0.24 -4.13 16 7 C -0.04 -0.71 12.09 66.97 0.81 0.10 16 8 O -0.17 -3.91 8.81 -2.51 -0.02 -3.93 16 9 N -0.58 -17.15 2.69 -778.16 -2.10 -19.25 16 10 C 0.54 21.47 7.58 87.66 0.66 22.13 16 11 O -0.56 -27.09 15.22 -3.04 -0.05 -27.14 16 12 C -0.12 -4.96 4.25 71.24 0.30 -4.66 16 13 S -0.16 -8.97 20.59 -56.49 -1.16 -10.13 16 14 C -0.54 -31.28 9.50 67.95 0.65 -30.63 16 15 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 16 C 0.01 0.82 5.49 84.86 0.47 1.29 16 17 N -0.91 -56.49 13.22 21.65 0.29 -56.21 16 18 Si 1.00 43.72 29.55 68.60 2.03 45.75 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 20 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 22 C 0.05 1.09 4.40 44.99 0.20 1.29 16 23 C -0.19 -3.86 8.54 30.62 0.26 -3.60 16 24 C -0.16 -2.51 8.67 30.62 0.27 -2.24 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 27 H 0.09 1.43 5.21 -2.39 -0.01 1.42 16 28 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 29 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 30 H 0.24 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.10 3.95 7.64 -2.39 -0.02 3.93 16 32 H 0.12 4.42 5.53 -2.40 -0.01 4.41 16 33 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 34 H 0.12 2.74 7.41 -2.39 -0.02 2.72 16 35 H 0.09 2.25 5.74 -2.39 -0.01 2.23 16 36 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.11 1.73 5.73 -2.39 -0.01 1.72 16 Total: -1.00 -77.42 327.82 5.02 -72.40 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 1.07 Total: 20.99 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: 4.96 Total: -22.48 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -1.81 Total: -75.45 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.07 Total: -31.07 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.16 Total: -10.13 kcal Total: -77.42 5.02 -72.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299134614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.040 kcal (2) G-P(sol) polarization free energy of solvation -77.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds