Wall clock time and date at job start Tue Mar 31 2020 07:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47353 * 2 1 4 4 C 1.50698 * 109.47146 * 239.99918 * 2 1 3 5 5 C 1.34518 * 125.78683 * 100.00097 * 4 2 1 6 6 C 1.41390 * 106.83745 * 180.02562 * 5 4 2 7 7 C 1.34507 * 106.84204 * 0.02562 * 6 5 4 8 8 O 1.34306 * 125.79141 * 280.35218 * 4 2 1 9 9 N 1.46501 * 109.47318 * 120.00272 * 2 1 3 10 10 C 1.34781 * 119.99741 * 239.99878 * 9 2 1 11 11 O 1.21281 * 119.99480 * 176.28672 * 10 9 2 12 12 C 1.50695 * 120.00064 * 356.28923 * 10 9 2 13 13 S 1.81003 * 109.46864 * 185.01667 * 12 10 9 14 14 C 1.76201 * 99.99956 * 179.97438 * 13 12 10 15 15 H 1.08005 * 120.00179 * 0.02562 * 14 13 12 16 16 C 1.38805 * 120.00112 * 179.97438 * 14 13 12 17 17 N 1.31627 * 119.99747 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99826 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47123 * 90.00401 * 18 16 14 20 20 H 1.48507 * 109.46973 * 209.99988 * 18 16 14 21 21 H 1.48495 * 109.47349 * 330.00333 * 18 16 14 22 22 C 1.46499 * 120.00329 * 59.99597 * 9 2 1 23 23 C 1.52994 * 117.50400 * 197.11820 * 22 9 2 24 24 C 1.52995 * 117.49974 * 128.45708 * 22 9 2 25 25 H 1.09002 * 109.46911 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46764 * 300.00178 * 1 2 3 27 27 H 1.08998 * 109.47093 * 59.99858 * 1 2 3 28 28 H 1.08001 * 126.58227 * 0.02562 * 5 4 2 29 29 H 1.08004 * 126.57404 * 180.02562 * 6 5 4 30 30 H 1.07997 * 125.78824 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47183 * 305.01144 * 12 10 9 32 32 H 1.08998 * 109.47316 * 65.01904 * 12 10 9 33 33 H 0.96997 * 119.99884 * 179.97438 * 17 16 14 34 34 H 1.09005 * 115.54654 * 342.79321 * 22 9 2 35 35 H 1.09005 * 117.49307 * 0.02562 * 23 22 9 36 36 H 1.08995 * 117.50037 * 145.01788 * 23 22 9 37 37 H 1.09000 * 117.50122 * 214.98354 * 24 22 9 38 38 H 1.08997 * 117.50076 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.4732 -0.1190 -2.3553 6 6 2.8432 -1.1543 -3.2443 7 6 2.6058 -2.3163 -2.6098 8 8 2.1096 -2.0414 -1.3924 9 7 2.0184 -0.6907 1.1961 10 6 2.7933 -0.0356 2.0833 11 8 3.1419 -0.5860 3.1063 12 6 3.2264 1.3805 1.8041 13 16 4.3684 1.9281 3.0973 14 6 4.7040 3.5643 2.5362 15 1 4.2387 3.9318 1.6335 16 6 5.5655 4.3815 3.2551 17 7 6.1322 3.9338 4.3556 18 14 5.9207 6.1164 2.6606 19 1 4.9345 7.0546 3.2541 20 1 7.2910 6.5109 3.0754 21 1 5.8191 6.1628 1.1799 22 6 1.6645 -2.0932 1.4280 23 6 1.8478 -2.6434 2.8438 24 6 2.8041 -3.0692 1.7270 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.5330 0.9428 -2.5433 29 1 3.2403 -1.0349 -4.2416 30 1 2.7811 -3.3030 -3.0124 31 1 3.7259 1.4236 0.8363 32 1 2.3526 2.0319 1.7914 33 1 6.7345 4.5047 4.8577 34 1 0.8207 -2.4672 0.8481 35 1 2.2314 -1.9616 3.6029 36 1 1.1249 -3.3795 3.1952 37 1 2.7099 -4.0854 1.3442 38 1 3.8172 -2.6680 1.7508 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299134617.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:20 Heat of formation + Delta-G solvation = 26.476974 kcal Electronic energy + Delta-G solvation = -21678.894040 eV Core-core repulsion = 18423.349932 eV Total energy + Delta-G solvation = -3255.544108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.65835 -40.09515 -36.37658 -35.42117 -33.02777 -32.44515 -31.05954 -29.00369 -28.54072 -25.51156 -23.79262 -22.79729 -22.11602 -21.66991 -20.67855 -19.00345 -17.96530 -17.20139 -16.68331 -16.17550 -15.95030 -15.22654 -14.81883 -14.57148 -14.19834 -13.96452 -13.67742 -13.26130 -13.20375 -12.97841 -12.86177 -12.65925 -12.50395 -12.13402 -11.91061 -11.60568 -11.21488 -11.07096 -11.01477 -10.88678 -10.77020 -10.16982 -9.98074 -9.82338 -9.08134 -8.94485 -8.56142 -8.35632 -8.25287 -6.52056 -6.23251 -3.93981 1.62573 2.49486 2.75622 2.86070 3.03497 3.21390 3.23968 3.29090 3.52234 4.14144 4.18384 4.36809 4.71398 4.78138 4.88069 4.99997 5.03332 5.08763 5.12187 5.25058 5.29520 5.41862 5.51284 5.60304 5.67965 5.75959 5.80573 5.82937 5.89145 5.94352 6.01600 6.04885 6.23034 6.39092 6.53799 6.94312 7.04910 7.49257 7.58017 8.33411 8.52797 9.22184 10.84192 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.004570 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.325454 B = 6125.337458 C = 7114.849515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.219 3.781 3 H 0.125 0.875 4 C -0.017 4.017 5 C -0.204 4.204 6 C -0.213 4.213 7 C -0.045 4.045 8 O -0.162 6.162 9 N -0.587 5.587 10 C 0.538 3.462 11 O -0.501 6.501 12 C -0.157 4.157 13 S -0.056 6.056 14 C -0.536 4.536 15 H 0.073 0.927 16 C 0.075 3.925 17 N -0.867 5.867 18 Si 0.918 3.082 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.079 3.921 23 C -0.198 4.198 24 C -0.184 4.184 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.200 0.800 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.269 0.731 34 H 0.122 0.878 35 H 0.148 0.852 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.431 -11.172 -13.752 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.115 3.885 3 H 0.143 0.857 4 C -0.068 4.068 5 C -0.224 4.224 6 C -0.232 4.232 7 C -0.113 4.113 8 O -0.057 6.057 9 N -0.320 5.320 10 C 0.327 3.673 11 O -0.376 6.376 12 C -0.307 4.307 13 S 0.171 5.829 14 C -0.684 4.684 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.502 5.502 18 Si 0.744 3.256 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.025 4.025 23 C -0.235 4.235 24 C -0.223 4.223 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.167 0.833 29 H 0.164 0.836 30 H 0.216 0.784 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.139 0.861 35 H 0.166 0.834 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.812 -12.172 -11.893 20.162 hybrid contribution -0.074 1.799 -2.043 2.723 sum -10.885 -10.373 -13.936 20.501 Atomic orbital electron populations 1.22210 0.93061 1.03277 1.03372 1.19762 0.94884 0.95400 0.78479 0.85712 1.22743 1.05025 0.81041 0.98024 1.21611 1.06003 1.00807 0.93942 1.21798 1.07389 0.92221 1.01818 1.24031 1.02972 1.00341 0.83916 1.84067 1.64428 1.24313 1.32876 1.47427 1.51532 1.10883 1.22117 1.20403 0.76632 0.87808 0.82489 1.90477 1.53780 1.67574 1.25759 1.23641 1.05195 0.94825 1.07046 1.85393 1.53339 1.15204 1.28990 1.22856 1.33013 0.98937 1.13609 0.90931 1.24980 0.94896 0.98999 0.94602 1.70011 1.28548 1.36769 1.14919 0.86177 0.77821 0.82573 0.79001 1.20233 1.20743 1.19685 1.21450 0.99736 0.80680 1.00680 1.24139 1.01927 1.03536 0.93919 1.23155 0.96599 0.98744 1.03790 0.91737 0.90704 0.90785 0.83315 0.83580 0.78370 0.89328 0.89042 0.92159 0.86051 0.83434 0.89869 0.89157 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.18 37.16 0.34 -1.18 16 2 C 0.22 2.64 3.00 -69.08 -0.21 2.43 16 3 H 0.13 1.47 5.78 -51.93 -0.30 1.17 16 4 C -0.02 -0.20 6.07 -35.62 -0.22 -0.42 16 5 C -0.20 -2.34 10.80 -39.70 -0.43 -2.77 16 6 C -0.21 -2.20 10.91 -39.70 -0.43 -2.63 16 7 C -0.04 -0.44 12.09 29.41 0.36 -0.09 16 8 O -0.16 -1.96 9.17 5.69 0.05 -1.91 16 9 N -0.59 -8.70 2.72 -159.90 -0.43 -9.13 16 10 C 0.54 10.14 7.45 -10.99 -0.08 10.06 16 11 O -0.50 -10.92 11.75 5.56 0.07 -10.85 16 12 C -0.16 -3.14 4.48 36.00 0.16 -2.98 16 13 S -0.06 -1.50 20.58 -107.50 -2.21 -3.71 16 14 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 15 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 16 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 17 N -0.87 -25.97 13.22 55.49 0.73 -25.24 16 18 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 C 0.08 1.08 4.77 -67.94 -0.32 0.75 16 23 C -0.20 -2.88 9.64 -26.70 -0.26 -3.14 16 24 C -0.18 -2.62 9.90 -26.70 -0.26 -2.89 16 25 H 0.06 0.59 6.93 -51.93 -0.36 0.23 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 30 H 0.20 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.09 1.68 7.70 -51.92 -0.40 1.28 16 32 H 0.09 1.67 7.86 -51.92 -0.41 1.26 16 33 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.12 1.41 6.86 -51.93 -0.36 1.06 16 35 H 0.15 2.66 4.96 -53.38 -0.26 2.40 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.09 1.60 7.82 -51.93 -0.41 1.19 16 LS Contribution 332.38 15.07 5.01 5.01 Total: -1.00 -33.30 332.38 -7.97 -41.27 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.00 Total: 3.99 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -1.16 Total: -15.63 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.30 Total: -34.37 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.12 Total: -12.76 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.30 -7.97 -41.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299134617.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.748 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds