Wall clock time and date at job start Tue Mar 31 2020 07:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47353 * 2 1 4 4 C 1.50698 * 109.47146 * 239.99918 * 2 1 3 5 5 C 1.34518 * 125.78683 * 100.00097 * 4 2 1 6 6 C 1.41390 * 106.83745 * 180.02562 * 5 4 2 7 7 C 1.34507 * 106.84204 * 0.02562 * 6 5 4 8 8 O 1.34306 * 125.79141 * 280.35218 * 4 2 1 9 9 N 1.46501 * 109.47318 * 120.00272 * 2 1 3 10 10 C 1.34781 * 119.99741 * 239.99878 * 9 2 1 11 11 O 1.21281 * 119.99480 * 176.28672 * 10 9 2 12 12 C 1.50695 * 120.00064 * 356.28923 * 10 9 2 13 13 S 1.81003 * 109.46864 * 185.01667 * 12 10 9 14 14 C 1.76201 * 99.99956 * 179.97438 * 13 12 10 15 15 H 1.08005 * 120.00179 * 0.02562 * 14 13 12 16 16 C 1.38805 * 120.00112 * 179.97438 * 14 13 12 17 17 N 1.31627 * 119.99747 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99826 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47123 * 90.00401 * 18 16 14 20 20 H 1.48507 * 109.46973 * 209.99988 * 18 16 14 21 21 H 1.48495 * 109.47349 * 330.00333 * 18 16 14 22 22 C 1.46499 * 120.00329 * 59.99597 * 9 2 1 23 23 C 1.52994 * 117.50400 * 197.11820 * 22 9 2 24 24 C 1.52995 * 117.49974 * 128.45708 * 22 9 2 25 25 H 1.09002 * 109.46911 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46764 * 300.00178 * 1 2 3 27 27 H 1.08998 * 109.47093 * 59.99858 * 1 2 3 28 28 H 1.08001 * 126.58227 * 0.02562 * 5 4 2 29 29 H 1.08004 * 126.57404 * 180.02562 * 6 5 4 30 30 H 1.07997 * 125.78824 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47183 * 305.01144 * 12 10 9 32 32 H 1.08998 * 109.47316 * 65.01904 * 12 10 9 33 33 H 0.96997 * 119.99884 * 179.97438 * 17 16 14 34 34 H 1.09005 * 115.54654 * 342.79321 * 22 9 2 35 35 H 1.09005 * 117.49307 * 0.02562 * 23 22 9 36 36 H 1.08995 * 117.50037 * 145.01788 * 23 22 9 37 37 H 1.09000 * 117.50122 * 214.98354 * 24 22 9 38 38 H 1.08997 * 117.50076 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.4732 -0.1190 -2.3553 6 6 2.8432 -1.1543 -3.2443 7 6 2.6058 -2.3163 -2.6098 8 8 2.1096 -2.0414 -1.3924 9 7 2.0184 -0.6907 1.1961 10 6 2.7933 -0.0356 2.0833 11 8 3.1419 -0.5860 3.1063 12 6 3.2264 1.3805 1.8041 13 16 4.3684 1.9281 3.0973 14 6 4.7040 3.5643 2.5362 15 1 4.2387 3.9318 1.6335 16 6 5.5655 4.3815 3.2551 17 7 6.1322 3.9338 4.3556 18 14 5.9207 6.1164 2.6606 19 1 4.9345 7.0546 3.2541 20 1 7.2910 6.5109 3.0754 21 1 5.8191 6.1628 1.1799 22 6 1.6645 -2.0932 1.4280 23 6 1.8478 -2.6434 2.8438 24 6 2.8041 -3.0692 1.7270 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.5330 0.9428 -2.5433 29 1 3.2403 -1.0349 -4.2416 30 1 2.7811 -3.3030 -3.0124 31 1 3.7259 1.4236 0.8363 32 1 2.3526 2.0319 1.7914 33 1 6.7345 4.5047 4.8577 34 1 0.8207 -2.4672 0.8481 35 1 2.2314 -1.9616 3.6029 36 1 1.1249 -3.3795 3.1952 37 1 2.7099 -4.0854 1.3442 38 1 3.8172 -2.6680 1.7508 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299134617.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:19 Heat of formation + Delta-G solvation = 6.541114 kcal Electronic energy + Delta-G solvation = -21679.758524 eV Core-core repulsion = 18423.349932 eV Total energy + Delta-G solvation = -3256.408592 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.48749 -41.42080 -37.69259 -36.50624 -34.58926 -33.86317 -32.21237 -30.46433 -29.36869 -27.67536 -24.68701 -24.02773 -23.27524 -22.51935 -21.61574 -20.45999 -19.48458 -18.55931 -17.79917 -17.28189 -16.92311 -16.88284 -16.55018 -15.97885 -15.55323 -15.34035 -14.71580 -14.63957 -14.45018 -14.11150 -13.98468 -13.67012 -13.55947 -13.35873 -13.17738 -12.89810 -12.81837 -12.65696 -12.53438 -12.28300 -12.03253 -11.72919 -11.27297 -11.14444 -10.79848 -10.38322 -10.28411 -9.58432 -9.38277 -8.67573 -8.35063 -6.13187 0.77980 1.21303 1.41358 1.42674 1.46067 1.54933 1.71462 1.96096 2.14566 2.26485 2.99215 3.00929 3.19511 3.46893 3.59752 3.93789 3.96208 4.04204 4.13475 4.17082 4.20718 4.24258 4.33482 4.39450 4.53863 4.76964 4.80522 4.81294 4.95672 5.02911 5.07819 5.16352 5.25742 5.35335 5.41498 5.61784 5.72940 6.12914 6.19506 6.30312 7.06421 7.10386 8.74194 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.004570 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.325454 B = 6125.337458 C = 7114.849515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.213 3.787 3 H 0.124 0.876 4 C -0.037 4.037 5 C -0.212 4.212 6 C -0.228 4.228 7 C -0.041 4.041 8 O -0.175 6.175 9 N -0.576 5.576 10 C 0.534 3.466 11 O -0.539 6.539 12 C -0.130 4.130 13 S -0.143 6.143 14 C -0.546 4.546 15 H 0.083 0.917 16 C 0.015 3.985 17 N -0.911 5.911 18 Si 0.997 3.003 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.258 1.258 22 C 0.086 3.914 23 C -0.205 4.205 24 C -0.183 4.183 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.158 0.842 29 H 0.165 0.835 30 H 0.234 0.766 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.271 0.729 34 H 0.153 0.847 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.119 0.881 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.921 -11.219 -16.470 23.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.110 3.890 3 H 0.142 0.858 4 C -0.088 4.088 5 C -0.232 4.232 6 C -0.247 4.247 7 C -0.109 4.109 8 O -0.070 6.070 9 N -0.307 5.307 10 C 0.322 3.678 11 O -0.417 6.417 12 C -0.281 4.281 13 S 0.084 5.916 14 C -0.694 4.694 15 H 0.101 0.899 16 C -0.189 4.189 17 N -0.548 5.548 18 Si 0.819 3.181 19 H -0.192 1.192 20 H -0.204 1.204 21 H -0.182 1.182 22 C -0.018 4.018 23 C -0.242 4.242 24 C -0.222 4.222 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.112 0.888 28 H 0.175 0.825 29 H 0.183 0.817 30 H 0.250 0.750 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.080 0.920 34 H 0.170 0.830 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.334 -12.230 -14.652 22.724 hybrid contribution 0.348 1.695 -1.291 2.159 sum -11.986 -10.535 -15.943 22.557 Atomic orbital electron populations 1.22181 0.90727 1.03992 1.04298 1.20012 0.96665 0.95047 0.77264 0.85823 1.22674 1.06516 0.81411 0.98197 1.21903 1.05428 1.01691 0.94133 1.22125 1.07746 0.92068 1.02723 1.24778 1.01323 1.01841 0.82938 1.84045 1.64880 1.24160 1.33959 1.47410 1.49905 1.11395 1.21984 1.20214 0.77313 0.87421 0.82817 1.90513 1.55499 1.68150 1.27520 1.23451 1.04030 0.96181 1.04426 1.85556 1.56306 1.16309 1.33385 1.23197 1.33235 0.99016 1.13971 0.89890 1.26102 0.94413 1.03886 0.94536 1.70177 1.29433 1.38695 1.16480 0.84973 0.77723 0.76348 0.79076 1.19186 1.20378 1.18167 1.21722 1.00152 0.79675 1.00226 1.23985 1.02844 1.03855 0.93529 1.23114 0.94847 1.00197 1.04008 0.91120 0.90816 0.88788 0.82475 0.81709 0.75004 0.88111 0.87019 0.91990 0.83003 0.87093 0.87032 0.86246 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.18 71.98 0.66 -1.84 16 2 C 0.21 4.75 3.00 44.24 0.13 4.88 16 3 H 0.12 2.72 5.78 -2.38 -0.01 2.71 16 4 C -0.04 -0.82 6.07 24.83 0.15 -0.67 16 5 C -0.21 -4.44 10.80 22.19 0.24 -4.20 16 6 C -0.23 -4.12 10.91 22.19 0.24 -3.88 16 7 C -0.04 -0.70 12.09 66.97 0.81 0.11 16 8 O -0.17 -3.80 9.17 -2.54 -0.02 -3.82 16 9 N -0.58 -16.57 2.72 -778.19 -2.12 -18.69 16 10 C 0.53 20.46 7.45 87.65 0.65 21.12 16 11 O -0.54 -24.60 11.75 -3.03 -0.04 -24.64 16 12 C -0.13 -5.25 4.48 71.23 0.32 -4.93 16 13 S -0.14 -7.93 20.58 -56.49 -1.16 -9.09 16 14 C -0.55 -31.06 9.50 67.96 0.65 -30.42 16 15 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 16 C 0.02 0.88 5.49 84.86 0.47 1.34 16 17 N -0.91 -55.94 13.22 21.65 0.29 -55.65 16 18 Si 1.00 43.36 29.55 68.60 2.03 45.39 16 19 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 20 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 22 C 0.09 2.21 4.77 44.99 0.21 2.42 16 23 C -0.20 -5.87 9.64 30.61 0.30 -5.57 16 24 C -0.18 -5.08 9.90 30.61 0.30 -4.77 16 25 H 0.07 1.07 6.93 -2.39 -0.02 1.06 16 26 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 30 H 0.23 2.00 8.06 -2.91 -0.02 1.98 16 31 H 0.10 3.80 7.70 -2.39 -0.02 3.78 16 32 H 0.11 4.02 7.86 -2.40 -0.02 4.00 16 33 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 34 H 0.15 3.03 6.86 -2.38 -0.02 3.01 16 35 H 0.11 4.18 4.96 -25.45 -0.13 4.05 16 36 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.06 2.08 7.82 -2.39 -0.02 2.06 16 Total: -1.00 -75.16 332.38 5.06 -70.11 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.95 Total: 22.80 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 5.13 Total: -26.41 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -1.83 Total: -74.34 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.06 Total: -28.46 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.16 Total: -9.09 kcal Total: -75.16 5.06 -70.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299134617.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.647 kcal (2) G-P(sol) polarization free energy of solvation -75.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds