Wall clock time and date at job start Tue Mar 31 2020 07:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36001 * 117.00280 * 2 1 4 4 C 1.38712 * 119.98009 * 179.97438 * 3 2 1 5 5 C 1.38082 * 120.02742 * 179.97438 * 4 3 2 6 6 C 1.38922 * 119.97868 * 359.97438 * 5 4 3 7 7 S 1.76199 * 120.02686 * 179.97438 * 6 5 4 8 8 C 1.81403 * 102.99932 * 172.57983 * 7 6 5 9 9 H 1.08994 * 109.46933 * 51.47331 * 8 7 6 10 10 C 1.52996 * 109.47157 * 171.47785 * 8 7 6 11 11 C 1.50702 * 109.46766 * 291.47678 * 8 7 6 12 12 O 1.21290 * 120.00385 * 339.99601 * 11 8 7 13 13 N 1.34781 * 119.99715 * 160.00067 * 11 8 7 14 14 C 1.46495 * 120.00271 * 359.97438 * 13 11 8 15 15 C 1.37099 * 119.99474 * 179.97438 * 13 11 8 16 16 H 1.07997 * 120.00673 * 332.35709 * 15 13 11 17 17 C 1.38955 * 119.99367 * 152.36157 * 15 13 11 18 18 N 1.31407 * 120.00008 * 351.29068 * 17 15 13 19 19 Si 1.86800 * 119.99746 * 171.29703 * 17 15 13 20 20 H 1.48491 * 109.47325 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47152 * 119.99967 * 19 17 15 22 22 H 1.48493 * 109.47107 * 239.99366 * 19 17 15 23 23 C 1.38921 * 119.94708 * 0.25764 * 6 5 4 24 24 C 1.38095 * 119.97319 * 359.48962 * 23 6 5 25 25 H 1.08999 * 109.47301 * 300.00538 * 1 2 3 26 26 H 1.09001 * 109.46214 * 60.00593 * 1 2 3 27 27 H 1.09000 * 109.47049 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.98293 * 359.94928 * 4 3 2 29 29 H 1.08010 * 120.01296 * 179.97438 * 5 4 3 30 30 H 1.09006 * 109.46837 * 293.43593 * 10 8 7 31 31 H 1.08998 * 109.47498 * 53.43345 * 10 8 7 32 32 H 1.08997 * 109.46976 * 173.44259 * 10 8 7 33 33 H 1.08994 * 109.47412 * 266.63064 * 14 13 11 34 34 H 1.09004 * 109.46883 * 26.62689 * 14 13 11 35 35 H 1.08997 * 109.47225 * 146.62314 * 14 13 11 36 36 H 0.97007 * 120.00157 * 180.02562 * 18 17 15 37 37 H 1.07994 * 120.01473 * 179.74539 * 23 6 5 38 38 H 1.07999 * 119.98551 * 180.23105 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4318 1.2838 0.0005 5 6 4.0597 2.5136 0.0000 6 6 3.3037 3.6790 -0.0016 7 16 4.1037 5.2490 -0.0016 8 6 2.7275 6.4082 -0.2322 9 1 1.9481 6.1971 0.4998 10 6 3.2303 7.8407 -0.0433 11 6 2.1667 6.2518 -1.6223 12 8 2.8350 5.7324 -2.4910 13 7 0.9225 6.6893 -1.9001 14 6 0.1152 7.3163 -0.8507 15 6 0.4126 6.5476 -3.1648 16 1 1.0776 6.5200 -4.0153 17 6 -0.9600 6.4395 -3.3522 18 7 -1.7558 6.3008 -2.3157 19 14 -1.6739 6.4911 -5.0777 20 1 -0.5752 6.6534 -6.0633 21 1 -2.4012 5.2255 -5.3505 22 1 -2.6130 7.6358 -5.1908 23 6 1.9164 3.6058 0.0027 24 6 1.2905 2.3748 -0.0020 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 4.0193 0.3776 0.0018 29 1 5.1384 2.5694 0.0008 30 1 3.5281 7.9873 0.9950 31 1 4.0868 8.0142 -0.6948 32 1 2.4343 8.5414 -0.2952 33 1 -0.5102 6.5617 -0.3737 34 1 0.7725 7.7666 -0.1068 35 1 -0.5174 8.0872 -1.2907 36 1 -2.7140 6.2250 -2.4466 37 1 1.3276 4.5111 0.0056 38 1 0.2121 2.3176 -0.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299556194.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:01 Heat of formation + Delta-G solvation = -32.906692 kcal Electronic energy + Delta-G solvation = -21847.100967 eV Core-core repulsion = 18588.981790 eV Total energy + Delta-G solvation = -3258.119177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.80549 -38.68044 -37.07994 -34.71983 -32.91183 -31.27857 -30.85655 -29.92896 -27.23446 -26.35132 -25.13597 -23.56057 -22.40065 -21.83274 -19.23209 -18.07029 -16.97301 -16.82320 -16.33023 -15.93005 -15.58964 -15.06973 -14.94533 -14.42382 -13.98776 -13.84540 -13.57044 -13.24488 -12.92586 -12.77893 -12.64986 -12.13408 -11.87756 -11.80551 -11.45639 -11.37265 -11.25850 -11.10841 -11.03090 -10.87076 -10.62598 -10.38222 -10.35418 -9.83948 -9.09061 -8.80468 -8.72619 -8.45493 -7.69518 -6.76117 -6.36301 -3.97908 1.53963 1.59577 1.97581 2.76849 3.10914 3.21584 3.28601 3.42007 3.80340 3.96166 4.07809 4.70917 4.97829 5.02335 5.08912 5.19692 5.24679 5.32504 5.35753 5.49202 5.55737 5.58869 5.63869 5.84287 5.90951 5.94702 6.12828 6.20209 6.29058 6.36991 6.56778 6.61550 6.74222 6.87808 7.10934 7.50973 7.53596 8.07369 8.41446 9.12116 9.32850 9.89246 10.66910 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012267 B = 0.006357 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.974770 B = 4403.228165 C = 5991.849265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.321 6.321 3 C 0.113 3.887 4 C -0.138 4.138 5 C -0.067 4.067 6 C -0.105 4.105 7 S -0.080 6.080 8 C -0.098 4.098 9 H 0.100 0.900 10 C -0.127 4.127 11 C 0.448 3.552 12 O -0.560 6.560 13 N -0.441 5.441 14 C 0.104 3.896 15 C -0.303 4.303 16 H 0.096 0.904 17 C 0.033 3.967 18 N -0.883 5.883 19 Si 0.925 3.075 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.075 4.075 24 C -0.181 4.181 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.066 0.934 36 H 0.266 0.734 37 H 0.127 0.873 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.594 -4.482 8.874 10.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.235 6.235 3 C 0.066 3.934 4 C -0.158 4.158 5 C -0.091 4.091 6 C -0.218 4.218 7 S 0.165 5.835 8 C -0.231 4.231 9 H 0.118 0.882 10 C -0.186 4.186 11 C 0.232 3.768 12 O -0.442 6.442 13 N -0.161 5.161 14 C -0.040 4.040 15 C -0.431 4.431 16 H 0.114 0.886 17 C -0.170 4.170 18 N -0.523 5.523 19 Si 0.751 3.249 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.206 1.206 23 C -0.099 4.099 24 C -0.201 4.201 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.115 0.885 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.145 0.855 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.968 -4.536 8.583 10.905 hybrid contribution -2.434 -0.097 -0.938 2.610 sum 2.534 -4.633 7.646 9.292 Atomic orbital electron populations 1.23032 0.78581 1.03515 1.01697 1.86031 1.21253 1.27054 1.89170 1.18952 0.92297 0.83957 0.98245 1.20215 0.91233 0.97932 1.06424 1.20489 0.99329 0.89878 0.99370 1.21572 0.96147 0.97353 1.06682 1.84701 1.14435 0.95137 1.89247 1.23778 0.99057 0.98950 1.01267 0.88187 1.21553 1.02381 0.92163 1.02494 1.19776 0.84521 0.83786 0.88683 1.90591 1.59348 1.46818 1.47458 1.43436 1.11733 1.50538 1.10375 1.21637 0.94068 0.98395 0.89923 1.19651 0.90937 1.48651 0.83850 0.88584 1.25367 0.96373 0.96161 0.99107 1.69952 1.04464 1.48313 1.29557 0.85878 0.78969 0.77779 0.82227 1.19188 1.20726 1.20648 1.21034 0.92979 0.98072 0.97811 1.21125 1.00072 0.91879 1.07031 0.92730 0.92433 0.88514 0.85116 0.85095 0.91384 0.91335 0.90280 0.92106 0.95069 0.91561 0.92340 0.85517 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.79 10.50 -19.74 -0.21 -5.00 16 3 C 0.11 1.86 6.69 -39.23 -0.26 1.60 16 4 C -0.14 -2.14 9.98 -39.46 -0.39 -2.54 16 5 C -0.07 -1.09 9.78 -39.39 -0.39 -1.48 16 6 C -0.10 -1.95 6.02 -39.08 -0.24 -2.19 16 7 S -0.08 -1.44 20.56 -107.50 -2.21 -3.66 16 8 C -0.10 -1.82 1.57 -27.88 -0.04 -1.87 16 9 H 0.10 1.75 5.87 -51.93 -0.30 1.44 16 10 C -0.13 -1.94 8.81 37.16 0.33 -1.62 16 11 C 0.45 10.69 5.34 -10.98 -0.06 10.63 16 12 O -0.56 -15.55 15.79 5.55 0.09 -15.46 16 13 N -0.44 -10.94 3.00 -122.20 -0.37 -11.30 16 14 C 0.10 2.21 8.14 59.84 0.49 2.69 16 15 C -0.30 -8.30 9.18 -14.93 -0.14 -8.43 16 16 H 0.10 2.79 7.49 -52.49 -0.39 2.40 16 17 C 0.03 0.86 5.17 -17.47 -0.09 0.77 16 18 N -0.88 -22.88 10.78 55.50 0.60 -22.29 16 19 Si 0.92 20.64 29.56 -169.99 -5.03 15.62 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 23 C -0.08 -1.46 8.83 -39.38 -0.35 -1.80 16 24 C -0.18 -3.19 9.03 -39.46 -0.36 -3.54 16 25 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 26 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.13 1.69 8.06 -52.48 -0.42 1.26 16 29 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 1.18 6.54 -51.93 -0.34 0.84 16 33 H 0.06 1.35 7.37 -51.93 -0.38 0.97 16 34 H 0.03 0.54 4.78 -51.93 -0.25 0.29 16 35 H 0.07 1.48 7.43 -51.93 -0.39 1.09 16 36 H 0.27 6.55 8.31 -40.82 -0.34 6.22 16 37 H 0.13 2.59 5.18 -52.49 -0.27 2.32 16 38 H 0.13 2.09 6.29 -52.49 -0.33 1.76 16 LS Contribution 324.99 15.07 4.90 4.90 Total: -1.00 -31.47 324.99 -7.43 -38.90 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.70 Total: 4.77 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -0.50 Total: -6.48 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: 0.23 Total: -33.59 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.12 Total: -20.46 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.62 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.21 Total: -3.66 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.47 -7.43 -38.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299556194.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.992 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds