Wall clock time and date at job start Tue Mar 31 2020 07:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36001 * 117.00280 * 2 1 4 4 C 1.38712 * 119.98009 * 179.97438 * 3 2 1 5 5 C 1.38082 * 120.02742 * 179.97438 * 4 3 2 6 6 C 1.38922 * 119.97868 * 359.97438 * 5 4 3 7 7 S 1.76199 * 120.02686 * 179.97438 * 6 5 4 8 8 C 1.81403 * 102.99932 * 172.57983 * 7 6 5 9 9 H 1.08994 * 109.46933 * 51.47331 * 8 7 6 10 10 C 1.52996 * 109.47157 * 171.47785 * 8 7 6 11 11 C 1.50702 * 109.46766 * 291.47678 * 8 7 6 12 12 O 1.21290 * 120.00385 * 339.99601 * 11 8 7 13 13 N 1.34781 * 119.99715 * 160.00067 * 11 8 7 14 14 C 1.46495 * 120.00271 * 359.97438 * 13 11 8 15 15 C 1.37099 * 119.99474 * 179.97438 * 13 11 8 16 16 H 1.07997 * 120.00673 * 332.35709 * 15 13 11 17 17 C 1.38955 * 119.99367 * 152.36157 * 15 13 11 18 18 N 1.31407 * 120.00008 * 351.29068 * 17 15 13 19 19 Si 1.86800 * 119.99746 * 171.29703 * 17 15 13 20 20 H 1.48491 * 109.47325 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47152 * 119.99967 * 19 17 15 22 22 H 1.48493 * 109.47107 * 239.99366 * 19 17 15 23 23 C 1.38921 * 119.94708 * 0.25764 * 6 5 4 24 24 C 1.38095 * 119.97319 * 359.48962 * 23 6 5 25 25 H 1.08999 * 109.47301 * 300.00538 * 1 2 3 26 26 H 1.09001 * 109.46214 * 60.00593 * 1 2 3 27 27 H 1.09000 * 109.47049 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.98293 * 359.94928 * 4 3 2 29 29 H 1.08010 * 120.01296 * 179.97438 * 5 4 3 30 30 H 1.09006 * 109.46837 * 293.43593 * 10 8 7 31 31 H 1.08998 * 109.47498 * 53.43345 * 10 8 7 32 32 H 1.08997 * 109.46976 * 173.44259 * 10 8 7 33 33 H 1.08994 * 109.47412 * 266.63064 * 14 13 11 34 34 H 1.09004 * 109.46883 * 26.62689 * 14 13 11 35 35 H 1.08997 * 109.47225 * 146.62314 * 14 13 11 36 36 H 0.97007 * 120.00157 * 180.02562 * 18 17 15 37 37 H 1.07994 * 120.01473 * 179.74539 * 23 6 5 38 38 H 1.07999 * 119.98551 * 180.23105 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4318 1.2838 0.0005 5 6 4.0597 2.5136 0.0000 6 6 3.3037 3.6790 -0.0016 7 16 4.1037 5.2490 -0.0016 8 6 2.7275 6.4082 -0.2322 9 1 1.9481 6.1971 0.4998 10 6 3.2303 7.8407 -0.0433 11 6 2.1667 6.2518 -1.6223 12 8 2.8350 5.7324 -2.4910 13 7 0.9225 6.6893 -1.9001 14 6 0.1152 7.3163 -0.8507 15 6 0.4126 6.5476 -3.1648 16 1 1.0776 6.5200 -4.0153 17 6 -0.9600 6.4395 -3.3522 18 7 -1.7558 6.3008 -2.3157 19 14 -1.6739 6.4911 -5.0777 20 1 -0.5752 6.6534 -6.0633 21 1 -2.4012 5.2255 -5.3505 22 1 -2.6130 7.6358 -5.1908 23 6 1.9164 3.6058 0.0027 24 6 1.2905 2.3748 -0.0020 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 4.0193 0.3776 0.0018 29 1 5.1384 2.5694 0.0008 30 1 3.5281 7.9873 0.9950 31 1 4.0868 8.0142 -0.6948 32 1 2.4343 8.5414 -0.2952 33 1 -0.5102 6.5617 -0.3737 34 1 0.7725 7.7666 -0.1068 35 1 -0.5174 8.0872 -1.2907 36 1 -2.7140 6.2250 -2.4466 37 1 1.3276 4.5111 0.0056 38 1 0.2121 2.3176 -0.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299556194.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:00 Heat of formation + Delta-G solvation = -51.571276 kcal Electronic energy + Delta-G solvation = -21847.910324 eV Core-core repulsion = 18588.981790 eV Total energy + Delta-G solvation = -3258.928534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.04893 -40.52193 -38.31717 -36.68636 -34.55572 -33.12017 -32.17020 -31.20511 -28.28963 -28.21037 -26.86625 -25.14116 -23.73870 -23.13878 -21.00911 -19.32463 -18.94317 -18.15790 -18.08832 -17.18848 -16.80103 -16.68939 -16.59657 -16.00254 -15.60280 -15.50748 -14.78046 -14.67192 -14.52899 -14.15053 -13.96495 -13.73982 -13.47231 -13.13731 -13.03944 -12.90291 -12.83963 -12.72809 -12.41654 -12.30742 -12.24705 -12.15427 -11.89577 -11.29256 -11.05100 -10.38413 -10.14911 -10.01206 -9.66953 -8.36267 -8.13069 -6.05245 0.19506 0.26084 0.57507 1.29326 1.34428 1.38361 1.50670 1.99106 2.23532 2.31642 2.62913 2.94703 3.04834 3.66021 3.80726 3.82568 3.91415 4.03702 4.18637 4.29109 4.32198 4.42717 4.50018 4.55928 4.66725 4.67377 4.73163 4.86565 4.96264 5.02842 5.10173 5.24375 5.26660 5.33520 5.41643 5.60509 6.06240 6.33289 6.43928 7.13075 7.39767 7.96830 8.65919 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012267 B = 0.006357 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.974770 B = 4403.228165 C = 5991.849265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.325 6.325 3 C 0.112 3.888 4 C -0.135 4.135 5 C -0.067 4.067 6 C -0.130 4.130 7 S -0.070 6.070 8 C -0.093 4.093 9 H 0.112 0.888 10 C -0.124 4.124 11 C 0.445 3.555 12 O -0.608 6.608 13 N -0.454 5.454 14 C 0.113 3.887 15 C -0.339 4.339 16 H 0.066 0.934 17 C 0.003 3.997 18 N -0.893 5.893 19 Si 0.983 3.017 20 H -0.276 1.276 21 H -0.277 1.277 22 H -0.263 1.263 23 C -0.098 4.098 24 C -0.194 4.194 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.129 0.871 28 H 0.162 0.838 29 H 0.155 0.845 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.273 0.727 37 H 0.107 0.893 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.596 -5.071 9.866 11.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.239 6.239 3 C 0.064 3.936 4 C -0.155 4.155 5 C -0.090 4.090 6 C -0.243 4.243 7 S 0.174 5.826 8 C -0.225 4.225 9 H 0.130 0.870 10 C -0.182 4.182 11 C 0.231 3.769 12 O -0.494 6.494 13 N -0.173 5.173 14 C -0.030 4.030 15 C -0.467 4.467 16 H 0.084 0.916 17 C -0.199 4.199 18 N -0.532 5.532 19 Si 0.807 3.193 20 H -0.201 1.201 21 H -0.203 1.203 22 H -0.188 1.188 23 C -0.122 4.122 24 C -0.215 4.215 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.148 0.852 28 H 0.180 0.820 29 H 0.173 0.827 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.125 0.875 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.942 -5.116 9.613 11.959 hybrid contribution -2.459 -0.025 -1.231 2.750 sum 2.484 -5.141 8.382 10.142 Atomic orbital electron populations 1.23314 0.76843 1.05714 1.01674 1.86033 1.23035 1.26041 1.88792 1.19123 0.92889 0.84120 0.97423 1.20606 0.91180 0.98827 1.04854 1.20840 1.00510 0.89407 0.98251 1.21815 0.96195 0.98376 1.07932 1.84523 1.14027 0.94962 1.89105 1.23721 0.99805 1.01377 0.97614 0.87016 1.21621 1.02150 0.89634 1.04832 1.20579 0.83786 0.82215 0.90299 1.90546 1.60508 1.48672 1.49663 1.43636 1.12428 1.50922 1.10279 1.21598 0.94293 0.97477 0.89634 1.19541 0.91408 1.51220 0.84543 0.91582 1.26029 0.96063 0.95212 1.02619 1.70017 1.04848 1.47505 1.30816 0.85024 0.78056 0.78321 0.77881 1.20066 1.20273 1.18823 1.20976 0.93483 0.97997 0.99710 1.21243 1.00629 0.92002 1.07588 0.91834 0.93387 0.85243 0.82048 0.82699 0.87568 0.91972 0.89878 0.93357 0.90934 0.92882 0.91750 0.87473 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.52 16 2 O -0.33 -9.14 10.50 -93.57 -0.98 -10.12 16 3 C 0.11 3.58 6.69 22.50 0.15 3.73 16 4 C -0.13 -3.94 9.98 22.35 0.22 -3.71 16 5 C -0.07 -2.09 9.78 22.40 0.22 -1.87 16 6 C -0.13 -4.84 6.02 22.60 0.14 -4.71 16 7 S -0.07 -2.51 20.56 -56.49 -1.16 -3.67 16 8 C -0.09 -3.41 1.57 29.85 0.05 -3.36 16 9 H 0.11 3.83 5.87 -2.39 -0.01 3.81 16 10 C -0.12 -3.55 8.81 71.98 0.63 -2.92 16 11 C 0.45 21.69 5.34 87.66 0.47 22.16 16 12 O -0.61 -34.98 15.79 -3.06 -0.05 -35.03 16 13 N -0.45 -23.02 3.00 -658.90 -1.98 -25.00 16 14 C 0.11 4.82 8.14 127.77 1.04 5.86 16 15 C -0.34 -19.19 9.18 84.04 0.77 -18.42 16 16 H 0.07 4.06 7.49 -2.91 -0.02 4.03 16 17 C 0.00 0.16 5.17 84.93 0.44 0.60 16 18 N -0.89 -46.41 10.78 21.66 0.23 -46.18 16 19 Si 0.98 42.57 29.56 68.60 2.03 44.60 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 23 C -0.10 -3.85 8.83 22.40 0.20 -3.66 16 24 C -0.19 -6.90 9.03 22.35 0.20 -6.69 16 25 H 0.06 1.25 7.66 -2.39 -0.02 1.23 16 26 H 0.05 1.12 7.66 -2.39 -0.02 1.10 16 27 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 29 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 30 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 2.32 6.54 -2.39 -0.02 2.30 16 33 H 0.05 2.17 7.37 -2.39 -0.02 2.15 16 34 H 0.07 2.43 4.78 -2.38 -0.01 2.42 16 35 H 0.05 2.37 7.43 -2.39 -0.02 2.35 16 36 H 0.27 13.27 8.31 -92.70 -0.77 12.50 16 37 H 0.11 4.54 5.18 -2.91 -0.02 4.52 16 38 H 0.13 4.42 6.29 -2.91 -0.02 4.41 16 Total: -1.00 -69.81 324.99 4.81 -65.00 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 1.08 Total: 21.88 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 5.64 Total: -11.48 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: -1.75 Total: -71.18 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -1.03 Total: -45.15 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -1.16 Total: -3.67 kcal Total: -69.81 4.81 -65.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299556194.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.429 kcal (2) G-P(sol) polarization free energy of solvation -69.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds