Wall clock time and date at job start Tue Mar 31 2020 07:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36002 * 116.99919 * 2 1 4 4 C 1.38716 * 119.97455 * 180.02562 * 3 2 1 5 5 C 1.38094 * 120.02248 * 180.27586 * 4 3 2 6 6 C 1.38921 * 119.97661 * 359.49117 * 5 4 3 7 7 S 1.76200 * 120.02692 * 180.27578 * 6 5 4 8 8 C 1.81398 * 102.99774 * 90.31906 * 7 6 5 9 9 H 1.08999 * 109.47040 * 52.05991 * 8 7 6 10 10 C 1.52995 * 109.47310 * 292.05722 * 8 7 6 11 11 C 1.50698 * 109.46861 * 172.05581 * 8 7 6 12 12 O 1.21293 * 120.00136 * 24.99984 * 11 8 7 13 13 N 1.34779 * 120.00022 * 205.00015 * 11 8 7 14 14 C 1.46493 * 120.00088 * 359.97438 * 13 11 8 15 15 C 1.37102 * 119.99933 * 180.02562 * 13 11 8 16 16 H 1.07992 * 119.99972 * 21.25437 * 15 13 11 17 17 C 1.38948 * 119.99707 * 201.25228 * 15 13 11 18 18 N 1.31413 * 120.00310 * 15.80464 * 17 15 13 19 19 Si 1.86804 * 119.99828 * 195.79562 * 17 15 13 20 20 H 1.48506 * 109.46880 * 90.00539 * 19 17 15 21 21 H 1.48501 * 109.47031 * 210.00240 * 19 17 15 22 22 H 1.48500 * 109.47426 * 330.00358 * 19 17 15 23 23 C 1.38926 * 119.94877 * 0.50218 * 6 5 4 24 24 C 1.38095 * 119.97279 * 359.75297 * 23 6 5 25 25 H 1.08993 * 109.47595 * 59.99905 * 1 2 3 26 26 H 1.08998 * 109.46878 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46845 * 299.99498 * 1 2 3 28 28 H 1.08000 * 119.98770 * 359.97438 * 4 3 2 29 29 H 1.08003 * 120.00973 * 179.71754 * 5 4 3 30 30 H 1.09007 * 109.47196 * 184.89407 * 10 8 7 31 31 H 1.09010 * 109.47131 * 304.89261 * 10 8 7 32 32 H 1.09001 * 109.47535 * 64.88995 * 10 8 7 33 33 H 1.09003 * 109.46946 * 90.27805 * 14 13 11 34 34 H 1.09005 * 109.47728 * 210.27828 * 14 13 11 35 35 H 1.09005 * 109.47559 * 330.27963 * 14 13 11 36 36 H 0.96994 * 119.99898 * 180.02562 * 18 17 15 37 37 H 1.07997 * 120.01563 * 179.72436 * 23 6 5 38 38 H 1.08002 * 119.98577 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4317 1.2838 -0.0005 5 6 4.0597 2.5137 0.0052 6 6 3.3036 3.6791 0.0009 7 16 4.1035 5.2491 0.0009 8 6 4.2856 5.6142 -1.7666 9 1 3.3202 5.5068 -2.2612 10 6 5.2882 4.6398 -2.3880 11 6 4.7841 7.0258 -1.9392 12 8 5.4135 7.5596 -1.0503 13 7 4.5304 7.6952 -3.0812 14 6 3.7707 7.0504 -4.1549 15 6 4.9844 8.9793 -3.2383 16 1 5.8076 9.3382 -2.6385 17 6 4.3853 9.8189 -4.1694 18 7 3.2109 9.5107 -4.6722 19 14 5.2491 11.3858 -4.7061 20 1 6.1059 11.0997 -5.8849 21 1 4.2366 12.4104 -5.0671 22 1 6.0915 11.8929 -3.5932 23 6 1.9163 3.6058 0.0013 24 6 1.2904 2.3748 0.0008 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0194 0.3777 -0.0005 29 1 5.1382 2.5695 0.0094 30 1 5.4634 4.9131 -3.4286 31 1 6.2279 4.6849 -1.8373 32 1 4.8877 3.6271 -2.3409 33 1 2.7081 7.2523 -4.0200 34 1 4.0961 7.4445 -5.1177 35 1 3.9425 5.9743 -4.1261 36 1 2.7929 10.0966 -5.3225 37 1 1.3274 4.5111 0.0024 38 1 0.2119 2.3175 0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299556195.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:03 Heat of formation + Delta-G solvation = -33.874422 kcal Electronic energy + Delta-G solvation = -20969.622031 eV Core-core repulsion = 17711.460890 eV Total energy + Delta-G solvation = -3258.161141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.21669 -38.56527 -37.47743 -34.70918 -32.75831 -31.31074 -31.23807 -30.16921 -27.55162 -26.34406 -25.03754 -23.30922 -22.82645 -22.30477 -19.22729 -18.43785 -17.14435 -16.85938 -16.33745 -16.16692 -16.00049 -14.97621 -14.75365 -14.48165 -14.06127 -13.96165 -13.74577 -13.62794 -13.13103 -12.98570 -12.71682 -12.32186 -12.19906 -11.73693 -11.52621 -11.40499 -11.29478 -11.20545 -11.08809 -10.98381 -10.86547 -10.35489 -10.27620 -9.72188 -9.14497 -9.04455 -8.45455 -8.23149 -7.72883 -7.29270 -6.35303 -3.88810 0.97473 1.22521 2.05121 2.93471 3.04275 3.15871 3.24839 3.30689 3.65083 3.86545 4.11844 4.59501 4.70811 4.79098 4.84616 4.85289 5.06651 5.15039 5.24632 5.27735 5.44132 5.45231 5.49432 5.66784 5.86457 5.90058 6.00419 6.03248 6.14157 6.23483 6.34450 6.45044 6.52146 6.79597 7.12311 7.14307 7.55523 8.07379 8.44292 9.14560 9.37630 9.92618 10.69313 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.031169 B = 0.003346 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.108332 B = 8365.156098 C = 8755.704618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.143 3.857 4 C -0.163 4.163 5 C -0.032 4.032 6 C -0.161 4.161 7 S -0.087 6.087 8 C -0.089 4.089 9 H 0.095 0.905 10 C -0.137 4.137 11 C 0.466 3.534 12 O -0.572 6.572 13 N -0.439 5.439 14 C 0.108 3.892 15 C -0.307 4.307 16 H 0.101 0.899 17 C 0.031 3.969 18 N -0.879 5.879 19 Si 0.926 3.074 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.268 1.268 23 C -0.032 4.032 24 C -0.217 4.217 25 H 0.057 0.943 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.133 0.867 29 H 0.139 0.861 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.029 0.971 36 H 0.268 0.732 37 H 0.135 0.865 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.690 -17.599 4.243 18.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.097 3.903 4 C -0.183 4.183 5 C -0.052 4.052 6 C -0.273 4.273 7 S 0.146 5.854 8 C -0.220 4.220 9 H 0.113 0.887 10 C -0.197 4.197 11 C 0.252 3.748 12 O -0.456 6.456 13 N -0.157 5.157 14 C -0.036 4.036 15 C -0.435 4.435 16 H 0.119 0.881 17 C -0.172 4.172 18 N -0.518 5.518 19 Si 0.753 3.247 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.193 1.193 23 C -0.052 4.052 24 C -0.238 4.238 25 H 0.075 0.925 26 H 0.118 0.882 27 H 0.075 0.925 28 H 0.151 0.849 29 H 0.156 0.844 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.152 0.848 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.104 -16.736 5.390 18.308 hybrid contribution -0.676 0.038 -1.597 1.735 sum -5.780 -16.698 3.793 18.073 Atomic orbital electron populations 1.23077 0.78278 1.03942 1.01600 1.86093 1.21537 1.27050 1.88459 1.19150 0.92442 0.84062 0.94628 1.20469 0.91315 0.98643 1.07865 1.21496 1.00219 0.90362 0.93163 1.22017 0.96004 0.98783 1.10470 1.86069 1.75857 1.15554 1.07918 1.23496 1.03015 0.99215 0.96275 0.88692 1.21996 0.99057 0.97226 1.01381 1.19100 0.86276 0.86116 0.83343 1.90549 1.44521 1.69409 1.41160 1.43475 1.47527 1.12809 1.11917 1.21566 0.96963 0.92752 0.92321 1.19689 1.15122 0.87291 1.21366 0.88119 1.25321 0.94975 0.99237 0.97697 1.70023 1.13186 1.38853 1.29778 0.85922 0.78930 0.80734 0.79123 1.20352 1.20952 1.19272 1.21504 0.93646 0.97377 0.92712 1.21273 1.00118 0.92199 1.10202 0.92452 0.88227 0.92510 0.84910 0.84368 0.91421 0.91044 0.92468 0.92540 0.90987 0.95277 0.92211 0.84752 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.34 10.50 -19.75 -0.21 -3.54 16 3 C 0.14 1.66 6.69 -39.23 -0.26 1.40 16 4 C -0.16 -1.88 9.98 -39.46 -0.39 -2.28 16 5 C -0.03 -0.40 9.06 -39.38 -0.36 -0.76 16 6 C -0.16 -2.36 5.37 -39.07 -0.21 -2.57 16 7 S -0.09 -1.59 20.38 -107.50 -2.19 -3.79 16 8 C -0.09 -1.71 2.28 -27.89 -0.06 -1.77 16 9 H 0.09 1.75 6.92 -51.92 -0.36 1.39 16 10 C -0.14 -2.22 8.78 37.16 0.33 -1.90 16 11 C 0.47 11.54 6.75 -10.99 -0.07 11.47 16 12 O -0.57 -16.21 15.82 5.55 0.09 -16.12 16 13 N -0.44 -11.30 3.02 -122.19 -0.37 -11.67 16 14 C 0.11 2.40 8.14 59.84 0.49 2.89 16 15 C -0.31 -8.59 9.29 -14.93 -0.14 -8.73 16 16 H 0.10 2.96 7.41 -52.49 -0.39 2.57 16 17 C 0.03 0.82 5.01 -17.47 -0.09 0.74 16 18 N -0.88 -23.37 10.81 55.50 0.60 -22.77 16 19 Si 0.93 20.73 29.58 -169.99 -5.03 15.70 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 23 C -0.03 -0.42 9.79 -39.38 -0.39 -0.81 16 24 C -0.22 -2.46 9.03 -39.46 -0.36 -2.82 16 25 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 26 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 30 H 0.07 1.08 6.96 -51.93 -0.36 0.72 16 31 H 0.07 1.18 8.14 -51.92 -0.42 0.75 16 32 H 0.06 0.79 7.19 -51.93 -0.37 0.41 16 33 H 0.06 1.30 7.66 -51.93 -0.40 0.91 16 34 H 0.07 1.67 6.97 -51.93 -0.36 1.31 16 35 H 0.03 0.54 5.22 -51.93 -0.27 0.26 16 36 H 0.27 6.72 8.31 -40.82 -0.34 6.39 16 37 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.13 1.15 6.29 -52.49 -0.33 0.82 16 LS Contribution 330.09 15.07 4.97 4.97 Total: -1.00 -32.09 330.09 -7.54 -39.64 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.89 Total: 1.56 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -0.52 Total: -3.98 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.23 Total: -34.44 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.12 Total: -19.67 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.19 Total: -3.79 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.09 -7.54 -39.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299556195.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.763 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds