Wall clock time and date at job start Tue Mar 31 2020 07:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36002 * 116.99919 * 2 1 4 4 C 1.38716 * 119.97455 * 180.02562 * 3 2 1 5 5 C 1.38094 * 120.02248 * 180.27586 * 4 3 2 6 6 C 1.38921 * 119.97661 * 359.49117 * 5 4 3 7 7 S 1.76200 * 120.02692 * 180.27578 * 6 5 4 8 8 C 1.81398 * 102.99774 * 90.31906 * 7 6 5 9 9 H 1.08999 * 109.47040 * 52.05991 * 8 7 6 10 10 C 1.52995 * 109.47310 * 292.05722 * 8 7 6 11 11 C 1.50698 * 109.46861 * 172.05581 * 8 7 6 12 12 O 1.21293 * 120.00136 * 24.99984 * 11 8 7 13 13 N 1.34779 * 120.00022 * 205.00015 * 11 8 7 14 14 C 1.46493 * 120.00088 * 359.97438 * 13 11 8 15 15 C 1.37102 * 119.99933 * 180.02562 * 13 11 8 16 16 H 1.07992 * 119.99972 * 21.25437 * 15 13 11 17 17 C 1.38948 * 119.99707 * 201.25228 * 15 13 11 18 18 N 1.31413 * 120.00310 * 15.80464 * 17 15 13 19 19 Si 1.86804 * 119.99828 * 195.79562 * 17 15 13 20 20 H 1.48506 * 109.46880 * 90.00539 * 19 17 15 21 21 H 1.48501 * 109.47031 * 210.00240 * 19 17 15 22 22 H 1.48500 * 109.47426 * 330.00358 * 19 17 15 23 23 C 1.38926 * 119.94877 * 0.50218 * 6 5 4 24 24 C 1.38095 * 119.97279 * 359.75297 * 23 6 5 25 25 H 1.08993 * 109.47595 * 59.99905 * 1 2 3 26 26 H 1.08998 * 109.46878 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46845 * 299.99498 * 1 2 3 28 28 H 1.08000 * 119.98770 * 359.97438 * 4 3 2 29 29 H 1.08003 * 120.00973 * 179.71754 * 5 4 3 30 30 H 1.09007 * 109.47196 * 184.89407 * 10 8 7 31 31 H 1.09010 * 109.47131 * 304.89261 * 10 8 7 32 32 H 1.09001 * 109.47535 * 64.88995 * 10 8 7 33 33 H 1.09003 * 109.46946 * 90.27805 * 14 13 11 34 34 H 1.09005 * 109.47728 * 210.27828 * 14 13 11 35 35 H 1.09005 * 109.47559 * 330.27963 * 14 13 11 36 36 H 0.96994 * 119.99898 * 180.02562 * 18 17 15 37 37 H 1.07997 * 120.01563 * 179.72436 * 23 6 5 38 38 H 1.08002 * 119.98577 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4317 1.2838 -0.0005 5 6 4.0597 2.5137 0.0052 6 6 3.3036 3.6791 0.0009 7 16 4.1035 5.2491 0.0009 8 6 4.2856 5.6142 -1.7666 9 1 3.3202 5.5068 -2.2612 10 6 5.2882 4.6398 -2.3880 11 6 4.7841 7.0258 -1.9392 12 8 5.4135 7.5596 -1.0503 13 7 4.5304 7.6952 -3.0812 14 6 3.7707 7.0504 -4.1549 15 6 4.9844 8.9793 -3.2383 16 1 5.8076 9.3382 -2.6385 17 6 4.3853 9.8189 -4.1694 18 7 3.2109 9.5107 -4.6722 19 14 5.2491 11.3858 -4.7061 20 1 6.1059 11.0997 -5.8849 21 1 4.2366 12.4104 -5.0671 22 1 6.0915 11.8929 -3.5932 23 6 1.9163 3.6058 0.0013 24 6 1.2904 2.3748 0.0008 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0194 0.3777 -0.0005 29 1 5.1382 2.5695 0.0094 30 1 5.4634 4.9131 -3.4286 31 1 6.2279 4.6849 -1.8373 32 1 4.8877 3.6271 -2.3409 33 1 2.7081 7.2523 -4.0200 34 1 4.0961 7.4445 -5.1177 35 1 3.9425 5.9743 -4.1261 36 1 2.7929 10.0966 -5.3225 37 1 1.3274 4.5111 0.0024 38 1 0.2119 2.3175 0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299556195.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:03 Heat of formation + Delta-G solvation = -52.988012 kcal Electronic energy + Delta-G solvation = -20970.450858 eV Core-core repulsion = 17711.460890 eV Total energy + Delta-G solvation = -3258.989968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.05286 -40.49150 -38.33961 -36.72421 -34.45374 -33.12752 -32.20432 -31.09081 -28.26941 -28.16480 -26.86104 -24.95516 -23.76582 -23.22415 -21.00666 -19.30499 -18.96274 -18.34729 -17.91688 -17.15671 -16.74139 -16.66844 -16.27729 -15.93508 -15.61869 -15.30110 -14.81851 -14.65962 -14.56235 -14.29056 -13.96121 -13.68573 -13.46059 -13.20644 -13.07094 -12.87949 -12.86102 -12.62163 -12.45152 -12.35096 -12.16944 -12.08778 -11.86780 -11.06744 -10.94908 -10.41185 -10.06451 -9.75075 -9.23104 -8.72672 -8.37730 -6.00534 -0.09158 0.30452 0.77871 1.36274 1.40970 1.53388 1.67644 1.99368 2.26335 2.30753 2.67663 2.97686 3.05152 3.75931 3.83099 3.88378 3.98547 4.10207 4.23745 4.35107 4.40480 4.45494 4.51061 4.56361 4.66137 4.72688 4.74758 4.95234 4.96013 5.02267 5.10381 5.23206 5.29936 5.38672 5.43363 5.61371 6.03049 6.33597 6.42195 7.11264 7.38960 7.94924 8.65281 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.031169 B = 0.003346 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.108332 B = 8365.156098 C = 8755.704618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.327 6.327 3 C 0.146 3.854 4 C -0.163 4.163 5 C -0.032 4.032 6 C -0.172 4.172 7 S -0.132 6.132 8 C -0.077 4.077 9 H 0.103 0.897 10 C -0.129 4.129 11 C 0.456 3.544 12 O -0.618 6.618 13 N -0.453 5.453 14 C 0.118 3.882 15 C -0.347 4.347 16 H 0.073 0.927 17 C 0.001 3.999 18 N -0.893 5.893 19 Si 0.990 3.010 20 H -0.263 1.263 21 H -0.273 1.273 22 H -0.277 1.277 23 C -0.041 4.041 24 C -0.213 4.213 25 H 0.065 0.935 26 H 0.122 0.878 27 H 0.066 0.934 28 H 0.153 0.847 29 H 0.147 0.853 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.275 0.725 37 H 0.133 0.867 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.845 -19.727 3.473 21.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.241 6.241 3 C 0.099 3.901 4 C -0.183 4.183 5 C -0.053 4.053 6 C -0.283 4.283 7 S 0.101 5.899 8 C -0.209 4.209 9 H 0.121 0.879 10 C -0.188 4.188 11 C 0.244 3.756 12 O -0.505 6.505 13 N -0.172 5.172 14 C -0.025 4.025 15 C -0.475 4.475 16 H 0.090 0.910 17 C -0.202 4.202 18 N -0.531 5.531 19 Si 0.813 3.187 20 H -0.188 1.188 21 H -0.198 1.198 22 H -0.201 1.201 23 C -0.062 4.062 24 C -0.233 4.233 25 H 0.084 0.916 26 H 0.140 0.860 27 H 0.084 0.916 28 H 0.171 0.829 29 H 0.164 0.836 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.151 0.849 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.286 -18.886 4.593 20.428 hybrid contribution -0.449 0.560 -1.289 1.476 sum -6.735 -18.326 3.304 19.802 Atomic orbital electron populations 1.23407 0.76211 1.05858 1.02451 1.86097 1.23676 1.26314 1.87972 1.19318 0.92690 0.84638 0.93404 1.20683 0.91765 0.98788 1.07089 1.21561 1.00674 0.90112 0.92934 1.21797 0.96449 0.96708 1.13384 1.86207 1.76915 1.19303 1.07469 1.23313 1.03800 0.96066 0.97673 0.87890 1.21954 0.98041 0.97863 1.00914 1.19991 0.85130 0.88097 0.82353 1.90504 1.46357 1.71104 1.42578 1.43728 1.47747 1.12565 1.13131 1.21517 0.95638 0.94690 0.90631 1.19630 1.15831 0.89191 1.22849 0.90951 1.26074 0.95388 1.01906 0.96814 1.70084 1.13582 1.39873 1.29531 0.84987 0.78046 0.77002 0.78627 1.18822 1.19758 1.20149 1.21560 0.93163 0.98328 0.93131 1.21469 1.01458 0.91221 1.09148 0.91629 0.85974 0.91561 0.82893 0.83552 0.91167 0.91674 0.89445 0.93672 0.92272 0.91393 0.91530 0.84878 0.82641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.26 16 2 O -0.33 -5.78 10.50 -93.57 -0.98 -6.76 16 3 C 0.15 2.95 6.69 22.50 0.15 3.10 16 4 C -0.16 -3.33 9.98 22.35 0.22 -3.10 16 5 C -0.03 -0.76 9.06 22.40 0.20 -0.56 16 6 C -0.17 -4.84 5.37 22.60 0.12 -4.72 16 7 S -0.13 -4.91 20.38 -56.49 -1.15 -6.06 16 8 C -0.08 -2.99 2.28 29.85 0.07 -2.92 16 9 H 0.10 3.73 6.92 -2.39 -0.02 3.72 16 10 C -0.13 -4.02 8.78 71.98 0.63 -3.38 16 11 C 0.46 23.31 6.75 87.66 0.59 23.90 16 12 O -0.62 -36.71 15.82 -3.07 -0.05 -36.76 16 13 N -0.45 -23.96 3.02 -658.90 -1.99 -25.95 16 14 C 0.12 5.26 8.14 127.77 1.04 6.30 16 15 C -0.35 -20.11 9.29 84.04 0.78 -19.33 16 16 H 0.07 4.50 7.41 -2.91 -0.02 4.48 16 17 C 0.00 0.03 5.01 84.93 0.43 0.45 16 18 N -0.89 -47.43 10.81 21.66 0.23 -47.19 16 19 Si 0.99 42.68 29.58 68.60 2.03 44.71 16 20 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 21 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 C -0.04 -1.03 9.79 22.40 0.22 -0.81 16 24 C -0.21 -4.25 9.03 22.35 0.20 -4.05 16 25 H 0.07 0.55 7.66 -2.39 -0.02 0.54 16 26 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 28 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 29 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 30 H 0.07 2.14 6.96 -2.38 -0.02 2.12 16 31 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.09 2.20 7.19 -2.39 -0.02 2.18 16 33 H 0.04 2.08 7.66 -2.39 -0.02 2.07 16 34 H 0.06 2.75 6.97 -2.38 -0.02 2.73 16 35 H 0.07 2.43 5.22 -2.38 -0.01 2.42 16 36 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 37 H 0.13 3.28 8.06 -2.91 -0.02 3.25 16 38 H 0.16 2.22 6.29 -2.91 -0.02 2.20 16 Total: -1.00 -71.49 330.09 4.93 -66.56 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 1.07 Total: 15.32 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 5.77 Total: -3.86 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -1.75 Total: -73.15 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -1.03 Total: -43.52 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: -4.91 SS G_CDS: -1.15 Total: -6.06 kcal Total: -71.49 4.93 -66.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299556195.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.573 kcal (2) G-P(sol) polarization free energy of solvation -71.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds