Wall clock time and date at job start Tue Mar 31 2020 07:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47033 * 2 1 4 4 O 1.42899 * 109.46874 * 240.00346 * 2 1 3 5 5 C 1.52998 * 109.47469 * 120.00615 * 2 1 3 6 6 N 1.46497 * 109.47239 * 184.99921 * 5 2 1 7 7 C 1.46500 * 119.99893 * 269.99832 * 6 5 2 8 8 C 1.34780 * 120.00259 * 89.99478 * 6 5 2 9 9 O 1.21553 * 120.00036 * 355.48000 * 8 6 5 10 10 C 1.47862 * 120.00135 * 175.47564 * 8 6 5 11 11 C 1.39675 * 120.10181 * 221.20408 * 10 8 6 12 12 C 1.38041 * 120.03770 * 179.78981 * 11 10 8 13 13 C 1.38181 * 120.24301 * 0.46637 * 12 11 10 14 14 C 1.39188 * 120.20178 * 359.78949 * 13 12 11 15 15 S 1.76197 * 120.01729 * 179.97438 * 14 13 12 16 16 C 1.76197 * 100.00130 * 265.12200 * 15 14 13 17 17 H 1.07998 * 120.00336 * 5.02277 * 16 15 14 18 18 C 1.38730 * 119.99906 * 185.02651 * 16 15 14 19 19 N 1.31624 * 120.00309 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99924 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47427 * 89.99826 * 20 18 16 22 22 H 1.48501 * 109.46969 * 209.99749 * 20 18 16 23 23 H 1.48502 * 109.46979 * 329.99606 * 20 18 16 24 24 C 1.38875 * 119.95609 * 359.97438 * 14 13 12 25 25 H 1.09004 * 109.46483 * 299.99767 * 1 2 3 26 26 H 1.08992 * 109.47349 * 59.99404 * 1 2 3 27 27 H 1.08999 * 109.47033 * 180.02562 * 1 2 3 28 28 H 0.96701 * 114.00249 * 300.00031 * 4 2 1 29 29 H 1.09009 * 109.46629 * 304.99715 * 5 2 1 30 30 H 1.08998 * 109.47599 * 64.99592 * 5 2 1 31 31 H 1.08992 * 109.47225 * 95.16813 * 7 6 5 32 32 H 1.09008 * 109.46680 * 215.16582 * 7 6 5 33 33 H 1.08996 * 109.46965 * 335.16210 * 7 6 5 34 34 H 1.08002 * 119.97734 * 0.02562 * 11 10 8 35 35 H 1.07995 * 119.87701 * 180.21295 * 12 11 10 36 36 H 1.07997 * 119.89624 * 179.76201 * 13 12 11 37 37 H 0.96995 * 120.00344 * 180.02562 * 19 18 16 38 38 H 1.08000 * 120.11697 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7214 1.2491 6 7 3.5001 -0.6180 1.3108 7 6 4.3343 -1.6424 0.6776 8 6 4.0759 0.4196 1.9499 9 8 3.3866 1.3120 2.4038 10 6 5.5460 0.4723 2.0990 11 6 6.1133 0.8930 3.3040 12 6 7.4859 0.9376 3.4432 13 6 8.3043 0.5763 2.3901 14 6 7.7498 0.1606 1.1830 15 16 8.7980 -0.2984 -0.1568 16 6 8.8591 1.2283 -1.0344 17 1 8.3863 2.1074 -0.6222 18 6 9.5144 1.3009 -2.2550 19 7 10.0911 0.2296 -2.7573 20 14 9.5798 2.9196 -3.1850 21 1 10.7875 3.6791 -2.7727 22 1 9.6390 2.6501 -4.6442 23 1 8.3650 3.7165 -2.8777 24 6 6.3699 0.1079 1.0355 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.7209 -1.5952 -1.2330 29 1 1.6054 -0.2618 2.1369 30 1 1.7517 -1.7716 1.2055 31 1 4.6160 -1.3142 -0.3228 32 1 5.2326 -1.7995 1.2749 33 1 3.7751 -2.5755 0.6100 34 1 5.4775 1.1799 4.1286 35 1 7.9217 1.2600 4.3773 36 1 9.3775 0.6169 2.5039 37 1 10.5496 0.2805 -3.6105 38 1 5.9369 -0.2146 0.1002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304961755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:08 Heat of formation + Delta-G solvation = -60.895967 kcal Electronic energy + Delta-G solvation = -21246.278941 eV Core-core repulsion = 17986.946058 eV Total energy + Delta-G solvation = -3259.332883 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.27675 -38.23682 -37.35039 -35.19861 -32.52151 -31.94033 -30.64027 -30.50317 -27.46053 -26.22900 -25.57858 -23.06303 -22.32767 -21.82777 -19.72247 -17.88585 -17.16091 -16.87217 -16.24418 -16.12788 -15.54882 -15.24911 -14.86011 -14.66152 -14.42370 -13.86039 -13.54059 -13.40555 -13.02882 -12.78043 -12.71741 -12.52340 -12.27431 -12.12399 -11.72106 -11.56674 -11.18883 -11.16051 -11.09841 -11.02058 -10.69015 -10.54003 -9.94988 -9.76875 -9.16970 -8.97828 -8.62833 -8.51789 -8.01201 -6.73788 -6.30359 -4.04435 1.30546 1.68005 2.89655 2.98105 3.18131 3.21491 3.27467 3.44691 4.05419 4.21254 4.22997 4.51867 4.68950 4.87637 4.93342 5.06452 5.13194 5.17984 5.24229 5.37498 5.44054 5.45627 5.48949 5.61564 5.74447 5.81013 5.82974 5.89719 5.95845 6.05466 6.24540 6.46372 6.61722 6.70897 6.91745 7.21021 7.33490 7.51396 7.56898 8.20944 8.31949 9.16175 10.76238 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.014053 B = 0.004748 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.984891 B = 5895.693110 C = 6978.304653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 H 0.103 0.897 4 O -0.554 6.554 5 C 0.087 3.913 6 N -0.607 5.607 7 C 0.075 3.925 8 C 0.568 3.432 9 O -0.544 6.544 10 C -0.150 4.150 11 C -0.069 4.069 12 C -0.140 4.140 13 C -0.059 4.059 14 C -0.107 4.107 15 S -0.036 6.036 16 C -0.520 4.520 17 H 0.075 0.925 18 C 0.075 3.925 19 N -0.871 5.871 20 Si 0.919 3.081 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.271 1.271 24 C -0.052 4.052 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.369 0.631 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.270 0.730 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.235 -5.154 8.326 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.023 3.977 3 H 0.121 0.879 4 O -0.359 6.359 5 C -0.036 4.036 6 N -0.339 5.339 7 C -0.067 4.067 8 C 0.357 3.643 9 O -0.423 6.423 10 C -0.154 4.154 11 C -0.088 4.088 12 C -0.160 4.160 13 C -0.080 4.080 14 C -0.217 4.217 15 S 0.199 5.801 16 C -0.668 4.668 17 H 0.094 0.906 18 C -0.134 4.134 19 N -0.506 5.506 20 Si 0.745 3.255 21 H -0.201 1.201 22 H -0.206 1.206 23 H -0.196 1.196 24 C -0.073 4.073 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.216 0.784 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.079 0.921 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.677 -5.217 8.002 16.683 hybrid contribution -0.842 1.607 -0.222 1.828 sum -14.519 -3.610 7.780 16.863 Atomic orbital electron populations 1.22429 0.95944 1.02428 1.03145 1.22388 0.92868 0.97742 0.84657 0.87927 1.86706 1.77043 1.28548 1.43575 1.22228 0.80551 1.01097 0.99730 1.47611 1.06192 1.25202 1.54862 1.22167 0.95521 0.90191 0.98822 1.18519 0.87951 0.81029 0.76754 1.90729 1.64666 1.36948 1.49909 1.19782 0.91899 1.07063 0.96688 1.21039 0.95014 0.96731 0.96060 1.21086 0.93161 1.02440 0.99275 1.21932 1.00247 0.93723 0.92092 1.22789 0.96927 1.01615 1.00397 1.83540 1.57586 1.19470 1.19535 1.22846 1.41365 0.95001 1.07540 0.90645 1.24979 0.94594 0.97731 0.96117 1.69978 1.33328 1.28129 1.19172 0.86146 0.78855 0.81952 0.78560 1.20127 1.20641 1.19557 1.22195 0.92985 0.94586 0.97549 0.91366 0.91508 0.92288 0.78447 0.89139 0.90213 0.91062 0.90292 0.91391 0.85992 0.85824 0.85162 0.92069 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 9.53 37.16 0.35 -1.09 16 2 C 0.08 0.91 3.83 -26.73 -0.10 0.81 16 3 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 4 O -0.55 -6.33 12.90 -35.23 -0.45 -6.78 16 5 C 0.09 0.91 5.07 -4.04 -0.02 0.89 16 6 N -0.61 -8.14 2.84 -182.69 -0.52 -8.66 16 7 C 0.08 0.90 8.56 59.85 0.51 1.41 16 8 C 0.57 9.54 7.32 -12.32 -0.09 9.45 16 9 O -0.54 -10.38 16.57 5.32 0.09 -10.29 16 10 C -0.15 -2.61 5.15 -105.00 -0.54 -3.15 16 11 C -0.07 -1.11 9.65 -39.12 -0.38 -1.49 16 12 C -0.14 -2.17 10.02 -39.67 -0.40 -2.57 16 13 C -0.06 -1.07 9.79 -39.25 -0.38 -1.45 16 14 C -0.11 -2.21 5.45 -38.99 -0.21 -2.43 16 15 S -0.04 -0.89 21.41 -107.50 -2.30 -3.19 16 16 C -0.52 -14.51 9.46 30.91 0.29 -14.22 16 17 H 0.08 2.12 7.79 -52.49 -0.41 1.71 16 18 C 0.07 2.07 5.49 -17.46 -0.10 1.98 16 19 N -0.87 -25.03 13.22 55.49 0.73 -24.30 16 20 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 C -0.05 -0.98 7.37 -38.92 -0.29 -1.27 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.37 2.60 9.05 45.56 0.41 3.01 16 29 H 0.09 1.00 7.49 -51.92 -0.39 0.61 16 30 H 0.08 0.59 7.86 -51.93 -0.41 0.18 16 31 H 0.07 0.95 6.85 -51.93 -0.36 0.59 16 32 H 0.08 1.01 5.99 -51.92 -0.31 0.70 16 33 H 0.07 0.59 7.83 -51.93 -0.41 0.18 16 34 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 37 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.14 2.59 5.52 -52.49 -0.29 2.30 16 LS Contribution 337.94 15.07 5.09 5.09 Total: -1.00 -33.03 337.94 -7.98 -41.01 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.25 Total: 3.85 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -1.35 Total: -13.13 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.22 Total: -32.96 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.37 Total: -17.07 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.30 Total: -3.19 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.03 -7.98 -41.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304961755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.886 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds