Wall clock time and date at job start Tue Mar 31 2020 07:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47033 * 2 1 4 4 O 1.42899 * 109.46874 * 240.00346 * 2 1 3 5 5 C 1.52998 * 109.47469 * 120.00615 * 2 1 3 6 6 N 1.46497 * 109.47239 * 184.99921 * 5 2 1 7 7 C 1.46500 * 119.99893 * 269.99832 * 6 5 2 8 8 C 1.34780 * 120.00259 * 89.99478 * 6 5 2 9 9 O 1.21553 * 120.00036 * 355.48000 * 8 6 5 10 10 C 1.47862 * 120.00135 * 175.47564 * 8 6 5 11 11 C 1.39675 * 120.10181 * 221.20408 * 10 8 6 12 12 C 1.38041 * 120.03770 * 179.78981 * 11 10 8 13 13 C 1.38181 * 120.24301 * 0.46637 * 12 11 10 14 14 C 1.39188 * 120.20178 * 359.78949 * 13 12 11 15 15 S 1.76197 * 120.01729 * 179.97438 * 14 13 12 16 16 C 1.76197 * 100.00130 * 265.12200 * 15 14 13 17 17 H 1.07998 * 120.00336 * 5.02277 * 16 15 14 18 18 C 1.38730 * 119.99906 * 185.02651 * 16 15 14 19 19 N 1.31624 * 120.00309 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99924 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47427 * 89.99826 * 20 18 16 22 22 H 1.48501 * 109.46969 * 209.99749 * 20 18 16 23 23 H 1.48502 * 109.46979 * 329.99606 * 20 18 16 24 24 C 1.38875 * 119.95609 * 359.97438 * 14 13 12 25 25 H 1.09004 * 109.46483 * 299.99767 * 1 2 3 26 26 H 1.08992 * 109.47349 * 59.99404 * 1 2 3 27 27 H 1.08999 * 109.47033 * 180.02562 * 1 2 3 28 28 H 0.96701 * 114.00249 * 300.00031 * 4 2 1 29 29 H 1.09009 * 109.46629 * 304.99715 * 5 2 1 30 30 H 1.08998 * 109.47599 * 64.99592 * 5 2 1 31 31 H 1.08992 * 109.47225 * 95.16813 * 7 6 5 32 32 H 1.09008 * 109.46680 * 215.16582 * 7 6 5 33 33 H 1.08996 * 109.46965 * 335.16210 * 7 6 5 34 34 H 1.08002 * 119.97734 * 0.02562 * 11 10 8 35 35 H 1.07995 * 119.87701 * 180.21295 * 12 11 10 36 36 H 1.07997 * 119.89624 * 179.76201 * 13 12 11 37 37 H 0.96995 * 120.00344 * 180.02562 * 19 18 16 38 38 H 1.08000 * 120.11697 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7214 1.2491 6 7 3.5001 -0.6180 1.3108 7 6 4.3343 -1.6424 0.6776 8 6 4.0759 0.4196 1.9499 9 8 3.3866 1.3120 2.4038 10 6 5.5460 0.4723 2.0990 11 6 6.1133 0.8930 3.3040 12 6 7.4859 0.9376 3.4432 13 6 8.3043 0.5763 2.3901 14 6 7.7498 0.1606 1.1830 15 16 8.7980 -0.2984 -0.1568 16 6 8.8591 1.2283 -1.0344 17 1 8.3863 2.1074 -0.6222 18 6 9.5144 1.3009 -2.2550 19 7 10.0911 0.2296 -2.7573 20 14 9.5798 2.9196 -3.1850 21 1 10.7875 3.6791 -2.7727 22 1 9.6390 2.6501 -4.6442 23 1 8.3650 3.7165 -2.8777 24 6 6.3699 0.1079 1.0355 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.7209 -1.5952 -1.2330 29 1 1.6054 -0.2618 2.1369 30 1 1.7517 -1.7716 1.2055 31 1 4.6160 -1.3142 -0.3228 32 1 5.2326 -1.7995 1.2749 33 1 3.7751 -2.5755 0.6100 34 1 5.4775 1.1799 4.1286 35 1 7.9217 1.2600 4.3773 36 1 9.3775 0.6169 2.5039 37 1 10.5496 0.2805 -3.6105 38 1 5.9369 -0.2146 0.1002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304961755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:08 Heat of formation + Delta-G solvation = -83.425214 kcal Electronic energy + Delta-G solvation = -21247.255883 eV Core-core repulsion = 17986.946058 eV Total energy + Delta-G solvation = -3260.309824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.51360 -39.44168 -38.45868 -36.32094 -34.64228 -32.96124 -31.93575 -31.75854 -28.37914 -27.72064 -27.31032 -24.27763 -23.70483 -22.79917 -21.00662 -19.74519 -18.49571 -17.97379 -17.47535 -17.19484 -16.92081 -16.62929 -16.48664 -16.06834 -15.58795 -15.11955 -14.76921 -14.68278 -14.59841 -13.91395 -13.89046 -13.49296 -13.37861 -13.19748 -13.09254 -12.97646 -12.86632 -12.63534 -12.58125 -12.34757 -11.93277 -11.73091 -11.46571 -11.23864 -11.06849 -10.68724 -9.93212 -9.75777 -9.59253 -8.76970 -8.38802 -6.17087 -0.09496 0.24942 1.30756 1.36304 1.45158 1.58087 1.68747 1.90662 2.24336 2.69682 2.94372 3.37478 3.43553 3.48001 3.79073 3.90353 4.02458 4.07302 4.14594 4.28561 4.34876 4.45568 4.49261 4.57551 4.66493 4.68186 4.82671 4.87907 4.96029 5.09119 5.18658 5.22715 5.34419 5.39881 5.47359 5.48852 5.84345 6.16165 6.16794 6.88483 6.96576 7.02870 8.67752 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.014053 B = 0.004748 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.984891 B = 5895.693110 C = 6978.304653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.087 3.913 3 H 0.061 0.939 4 O -0.576 6.576 5 C 0.085 3.915 6 N -0.599 5.599 7 C 0.076 3.924 8 C 0.561 3.439 9 O -0.573 6.573 10 C -0.154 4.154 11 C -0.063 4.063 12 C -0.122 4.122 13 C -0.066 4.066 14 C -0.128 4.128 15 S -0.074 6.074 16 C -0.540 4.540 17 H 0.062 0.938 18 C 0.027 3.973 19 N -0.902 5.902 20 Si 0.984 3.016 21 H -0.265 1.265 22 H -0.270 1.270 23 H -0.273 1.273 24 C -0.055 4.055 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.389 0.611 29 H 0.087 0.913 30 H 0.121 0.879 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.145 0.855 35 H 0.167 0.833 36 H 0.135 0.865 37 H 0.274 0.726 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.638 -5.308 9.490 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.026 3.974 3 H 0.079 0.921 4 O -0.384 6.384 5 C -0.038 4.038 6 N -0.329 5.329 7 C -0.066 4.066 8 C 0.350 3.650 9 O -0.455 6.455 10 C -0.159 4.159 11 C -0.082 4.082 12 C -0.142 4.142 13 C -0.087 4.087 14 C -0.239 4.239 15 S 0.160 5.840 16 C -0.688 4.688 17 H 0.080 0.920 18 C -0.179 4.179 19 N -0.538 5.538 20 Si 0.806 3.194 21 H -0.190 1.190 22 H -0.195 1.195 23 H -0.198 1.198 24 C -0.076 4.076 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.239 0.761 29 H 0.105 0.895 30 H 0.139 0.861 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.163 0.837 35 H 0.184 0.816 36 H 0.153 0.847 37 H 0.083 0.917 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.093 -5.419 9.156 18.466 hybrid contribution -0.483 1.596 -0.491 1.738 sum -15.576 -3.823 8.665 18.229 Atomic orbital electron populations 1.22336 0.93394 1.04210 1.03035 1.22227 0.94715 0.95687 0.84723 0.92127 1.86664 1.77630 1.30292 1.43779 1.22489 0.78445 1.03560 0.99256 1.47717 1.07740 1.24228 1.53243 1.22207 0.95786 0.91306 0.97331 1.18513 0.87598 0.81588 0.77274 1.90708 1.64994 1.38115 1.51635 1.19955 0.92432 1.06778 0.96753 1.21425 0.95672 0.95103 0.96024 1.21436 0.92578 1.00348 0.99815 1.22042 1.01024 0.93758 0.91888 1.22543 0.96861 1.04762 0.99776 1.83364 1.59539 1.19280 1.21791 1.23067 1.41494 0.95813 1.08382 0.91963 1.25852 0.94005 1.01174 0.96857 1.70073 1.33977 1.30073 1.19702 0.85166 0.78910 0.77716 0.77582 1.18971 1.19486 1.19774 1.22011 0.92467 0.95188 0.97918 0.91000 0.92109 0.89521 0.76126 0.89497 0.86057 0.92856 0.91350 0.87330 0.83678 0.81601 0.84680 0.91657 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 9.53 71.98 0.69 -1.72 16 2 C 0.09 1.81 3.83 30.59 0.12 1.92 16 3 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 4 O -0.58 -12.52 12.90 -148.98 -1.92 -14.44 16 5 C 0.08 1.60 5.07 86.38 0.44 2.04 16 6 N -0.60 -15.45 2.84 -850.18 -2.41 -17.86 16 7 C 0.08 1.73 8.56 127.77 1.09 2.83 16 8 C 0.56 18.61 7.32 86.79 0.64 19.24 16 9 O -0.57 -21.70 16.57 -3.88 -0.06 -21.76 16 10 C -0.15 -5.30 5.15 -20.11 -0.10 -5.40 16 11 C -0.06 -1.90 9.65 22.57 0.22 -1.68 16 12 C -0.12 -3.48 10.02 22.21 0.22 -3.26 16 13 C -0.07 -2.36 9.79 22.48 0.22 -2.14 16 14 C -0.13 -5.43 5.45 22.65 0.12 -5.31 16 15 S -0.07 -3.85 21.41 -56.49 -1.21 -5.06 16 16 C -0.54 -31.06 9.46 67.94 0.64 -30.41 16 17 H 0.06 3.61 7.79 -2.91 -0.02 3.59 16 18 C 0.03 1.52 5.49 84.84 0.47 1.98 16 19 N -0.90 -52.83 13.22 21.64 0.29 -52.54 16 20 Si 0.98 44.34 29.55 68.60 2.03 46.36 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 24 C -0.05 -2.11 7.37 22.70 0.17 -1.95 16 25 H 0.07 0.96 8.14 -2.38 -0.02 0.95 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.39 4.55 9.05 -74.06 -0.67 3.88 16 29 H 0.09 1.76 7.49 -2.38 -0.02 1.75 16 30 H 0.12 1.30 7.86 -2.39 -0.02 1.28 16 31 H 0.05 1.44 6.85 -2.39 -0.02 1.42 16 32 H 0.07 1.73 5.99 -2.38 -0.01 1.72 16 33 H 0.11 1.58 7.83 -2.39 -0.02 1.56 16 34 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 35 H 0.17 3.34 8.06 -2.91 -0.02 3.31 16 36 H 0.14 4.60 8.06 -2.91 -0.02 4.58 16 37 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.13 5.07 5.52 -2.91 -0.02 5.06 16 Total: -1.00 -74.01 337.94 2.04 -71.96 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.41 Total: 17.19 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 4.93 Total: -23.86 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: -2.13 Total: -70.40 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -1.99 Total: -36.20 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -1.21 Total: -5.06 kcal Total: -74.01 2.04 -71.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304961755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.462 kcal (2) G-P(sol) polarization free energy of solvation -74.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds