Wall clock time and date at job start Tue Mar 31 2020 07:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47088 * 2 1 4 4 O 1.42899 * 109.46920 * 119.99636 * 2 1 3 5 5 C 1.52992 * 109.47114 * 239.99751 * 2 1 3 6 6 N 1.46510 * 109.47054 * 180.02562 * 5 2 1 7 7 C 1.46491 * 119.99925 * 270.00252 * 6 5 2 8 8 C 1.34779 * 119.99662 * 89.99547 * 6 5 2 9 9 O 1.21544 * 120.00318 * 3.93465 * 8 6 5 10 10 C 1.47866 * 119.99284 * 183.92500 * 8 6 5 11 11 C 1.39672 * 120.10475 * 328.60282 * 10 8 6 12 12 C 1.38043 * 120.03694 * 179.97438 * 11 10 8 13 13 C 1.38184 * 120.24148 * 359.97438 * 12 11 10 14 14 C 1.39182 * 120.20614 * 0.04788 * 13 12 11 15 15 S 1.76194 * 120.02236 * 179.97438 * 14 13 12 16 16 C 1.76210 * 99.99996 * 267.26265 * 15 14 13 17 17 H 1.08000 * 119.99891 * 5.38484 * 16 15 14 18 18 C 1.38721 * 120.00031 * 185.38481 * 16 15 14 19 19 N 1.31631 * 120.00024 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00170 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.47139 * 89.99858 * 20 18 16 22 22 H 1.48498 * 109.47397 * 210.00084 * 20 18 16 23 23 H 1.48502 * 109.46897 * 330.00303 * 20 18 16 24 24 C 1.38881 * 119.95443 * 359.93214 * 14 13 12 25 25 H 1.09001 * 109.46900 * 60.00425 * 1 2 3 26 26 H 1.09001 * 109.47088 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47863 * 300.00335 * 1 2 3 28 28 H 0.96698 * 114.00179 * 300.00311 * 4 2 1 29 29 H 1.09001 * 109.47381 * 60.00118 * 5 2 1 30 30 H 1.09006 * 109.47305 * 299.99604 * 5 2 1 31 31 H 1.09006 * 109.47138 * 274.34960 * 7 6 5 32 32 H 1.08997 * 109.47414 * 34.34815 * 7 6 5 33 33 H 1.08994 * 109.47419 * 154.35498 * 7 6 5 34 34 H 1.07994 * 119.98130 * 359.97438 * 11 10 8 35 35 H 1.07988 * 119.87909 * 180.02562 * 12 11 10 36 36 H 1.08002 * 119.89245 * 179.97438 * 13 12 11 37 37 H 0.96999 * 119.99792 * 179.97438 * 19 18 16 38 38 H 1.08004 * 120.11354 * 180.32323 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2491 6 7 3.5051 -0.7218 -1.2488 7 6 4.2381 0.3767 -1.8828 8 6 4.1784 -1.7329 -0.6651 9 8 3.5724 -2.6793 -0.2021 10 6 5.6545 -1.6908 -0.5881 11 6 6.3905 -1.0559 -1.5911 12 6 7.7684 -1.0170 -1.5176 13 6 8.4254 -1.6043 -0.4533 14 6 7.7020 -2.2401 0.5516 15 16 8.5448 -2.9880 1.9061 16 6 8.7081 -4.6325 1.2946 17 1 8.3982 -4.8672 0.2870 18 6 9.2347 -5.6257 2.1074 19 7 9.6129 -5.3395 3.3353 20 14 9.4072 -7.3691 1.4594 21 1 10.7386 -7.5308 0.8216 22 1 9.2770 -8.3303 2.5838 23 1 8.3432 -7.6323 0.4574 24 6 6.3155 -2.2839 0.4862 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.7209 -0.2700 1.9980 29 1 1.6767 -0.2075 -2.1392 30 1 1.6767 -1.7490 -1.2491 31 1 4.3524 0.1707 -2.9471 32 1 3.6853 1.3067 -1.7501 33 1 5.2219 0.4701 -1.4232 34 1 5.8813 -0.5952 -2.4246 35 1 8.3349 -0.5251 -2.2943 36 1 9.5037 -1.5709 -0.4016 37 1 9.9808 -6.0341 3.9037 38 1 5.7513 -2.7720 1.2672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304961757.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:11 Heat of formation + Delta-G solvation = -44.443800 kcal Electronic energy + Delta-G solvation = -21124.024888 eV Core-core repulsion = 17865.405425 eV Total energy + Delta-G solvation = -3258.619463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21410 -38.12074 -37.16983 -35.33781 -32.45804 -32.02612 -30.61727 -30.48584 -27.58079 -26.29129 -25.51628 -23.04377 -22.27928 -21.47949 -19.60831 -18.01727 -17.49052 -16.74080 -16.48943 -15.96994 -15.62791 -14.83938 -14.79743 -14.65337 -14.07452 -14.03708 -13.50031 -13.13780 -13.13071 -12.95256 -12.71981 -12.55422 -12.28431 -12.21364 -11.87790 -11.25986 -11.23594 -11.08903 -11.04418 -10.99627 -10.63050 -10.14034 -9.87989 -9.59181 -9.11412 -8.88700 -8.68120 -8.47608 -7.94186 -6.66223 -6.23886 -3.97496 1.33148 1.72889 2.92185 3.15071 3.24382 3.28152 3.32884 3.53364 4.05822 4.13264 4.30008 4.64027 4.71852 4.79222 4.89065 4.95852 5.12545 5.13877 5.21586 5.29341 5.34745 5.44778 5.52847 5.54118 5.57179 5.67681 5.79676 5.89073 5.95021 6.06914 6.33446 6.49128 6.66684 6.71352 7.00086 7.26758 7.45473 7.61158 7.62862 8.38146 8.42915 9.22185 10.82871 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020133 B = 0.003873 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.421679 B = 7228.204271 C = 7827.486949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.084 3.916 3 H 0.051 0.949 4 O -0.546 6.546 5 C 0.123 3.877 6 N -0.616 5.616 7 C 0.062 3.938 8 C 0.569 3.431 9 O -0.516 6.516 10 C -0.148 4.148 11 C -0.109 4.109 12 C -0.143 4.143 13 C -0.060 4.060 14 C -0.106 4.106 15 S -0.037 6.037 16 C -0.518 4.518 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.871 5.871 20 Si 0.920 3.080 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.270 1.270 24 C -0.021 4.021 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.372 0.628 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.134 0.866 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.269 0.731 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.389 15.150 -10.813 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.023 3.977 3 H 0.069 0.931 4 O -0.351 6.351 5 C -0.001 4.001 6 N -0.350 5.350 7 C -0.081 4.081 8 C 0.358 3.642 9 O -0.391 6.391 10 C -0.153 4.153 11 C -0.127 4.127 12 C -0.163 4.163 13 C -0.081 4.081 14 C -0.216 4.216 15 S 0.197 5.803 16 C -0.665 4.665 17 H 0.094 0.906 18 C -0.136 4.136 19 N -0.507 5.507 20 Si 0.746 3.254 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.195 1.195 24 C -0.043 4.043 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.218 0.782 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.152 0.848 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.079 0.921 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.987 14.580 -9.796 21.845 hybrid contribution -0.667 -1.005 -1.204 1.704 sum -13.654 13.576 -11.000 22.175 Atomic orbital electron populations 1.22464 0.96183 1.03151 1.02391 1.22200 0.92640 0.95294 0.87560 0.93070 1.86777 1.76565 1.56591 1.15146 1.21481 0.80024 1.02978 0.95571 1.47542 1.05894 1.23420 1.58124 1.22447 0.98999 0.89312 0.97321 1.18378 0.87148 0.81765 0.76899 1.90771 1.69668 1.33075 1.45602 1.19857 0.92218 1.04554 0.98653 1.21741 0.94500 0.98116 0.98389 1.21075 0.94038 1.02109 0.99069 1.21936 1.00301 0.93885 0.91936 1.22815 0.95729 1.01121 1.01955 1.83550 1.70658 1.08485 1.17628 1.22845 1.48533 0.93058 1.02073 0.90616 1.24995 0.94703 0.99333 0.94542 1.69993 1.39769 1.34163 1.06757 0.86124 0.78736 0.81916 0.78587 1.20192 1.20661 1.19514 1.21873 0.93738 0.92868 0.95783 0.91701 0.91450 0.92138 0.78189 0.89467 0.89057 0.92451 0.91909 0.88603 0.84845 0.85958 0.85223 0.92117 0.84746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 9.53 37.16 0.35 -0.97 16 2 C 0.08 0.81 3.85 -26.73 -0.10 0.71 16 3 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 4 O -0.55 -7.18 12.10 -38.49 -0.47 -7.64 16 5 C 0.12 1.32 5.21 -4.04 -0.02 1.30 16 6 N -0.62 -7.94 2.83 -182.69 -0.52 -8.45 16 7 C 0.06 0.55 8.79 59.84 0.53 1.08 16 8 C 0.57 10.07 6.89 -12.32 -0.08 9.98 16 9 O -0.52 -11.17 15.73 2.07 0.03 -11.14 16 10 C -0.15 -2.66 5.47 -105.00 -0.57 -3.24 16 11 C -0.11 -1.58 7.44 -39.12 -0.29 -1.87 16 12 C -0.14 -2.12 10.02 -39.67 -0.40 -2.52 16 13 C -0.06 -1.10 9.79 -39.25 -0.38 -1.49 16 14 C -0.11 -2.34 5.45 -38.99 -0.21 -2.55 16 15 S -0.04 -0.99 21.41 -107.50 -2.30 -3.29 16 16 C -0.52 -15.02 9.46 30.91 0.29 -14.73 16 17 H 0.08 2.19 7.79 -52.49 -0.41 1.78 16 18 C 0.07 2.10 5.49 -17.46 -0.10 2.00 16 19 N -0.87 -25.94 13.22 55.49 0.73 -25.20 16 20 Si 0.92 22.01 29.55 -169.99 -5.02 16.98 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 C -0.02 -0.45 9.35 -38.92 -0.36 -0.81 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.37 3.30 9.08 45.56 0.41 3.72 16 29 H 0.09 0.63 8.07 -51.93 -0.42 0.21 16 30 H 0.09 1.19 7.37 -51.93 -0.38 0.81 16 31 H 0.06 0.41 7.41 -51.93 -0.38 0.02 16 32 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 33 H 0.10 0.95 4.74 -51.93 -0.25 0.70 16 34 H 0.13 1.44 4.75 -52.49 -0.25 1.19 16 35 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.13 2.28 8.06 -52.49 -0.42 1.86 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.13 3.12 7.95 -52.48 -0.42 2.71 16 LS Contribution 335.18 15.07 5.05 5.05 Total: -1.00 -35.87 335.18 -8.03 -43.91 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.19 Total: 2.89 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -1.36 Total: -13.10 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.22 Total: -33.66 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.43 Total: -18.78 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -0.99 SS G_CDS: -2.30 Total: -3.29 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.87 -8.03 -43.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304961757.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.539 kcal (2) G-P(sol) polarization free energy of solvation -35.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds