Wall clock time and date at job start Tue Mar 31 2020 07:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47088 * 2 1 4 4 O 1.42899 * 109.46920 * 119.99636 * 2 1 3 5 5 C 1.52992 * 109.47114 * 239.99751 * 2 1 3 6 6 N 1.46510 * 109.47054 * 180.02562 * 5 2 1 7 7 C 1.46491 * 119.99925 * 270.00252 * 6 5 2 8 8 C 1.34779 * 119.99662 * 89.99547 * 6 5 2 9 9 O 1.21544 * 120.00318 * 3.93465 * 8 6 5 10 10 C 1.47866 * 119.99284 * 183.92500 * 8 6 5 11 11 C 1.39672 * 120.10475 * 328.60282 * 10 8 6 12 12 C 1.38043 * 120.03694 * 179.97438 * 11 10 8 13 13 C 1.38184 * 120.24148 * 359.97438 * 12 11 10 14 14 C 1.39182 * 120.20614 * 0.04788 * 13 12 11 15 15 S 1.76194 * 120.02236 * 179.97438 * 14 13 12 16 16 C 1.76210 * 99.99996 * 267.26265 * 15 14 13 17 17 H 1.08000 * 119.99891 * 5.38484 * 16 15 14 18 18 C 1.38721 * 120.00031 * 185.38481 * 16 15 14 19 19 N 1.31631 * 120.00024 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00170 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.47139 * 89.99858 * 20 18 16 22 22 H 1.48498 * 109.47397 * 210.00084 * 20 18 16 23 23 H 1.48502 * 109.46897 * 330.00303 * 20 18 16 24 24 C 1.38881 * 119.95443 * 359.93214 * 14 13 12 25 25 H 1.09001 * 109.46900 * 60.00425 * 1 2 3 26 26 H 1.09001 * 109.47088 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47863 * 300.00335 * 1 2 3 28 28 H 0.96698 * 114.00179 * 300.00311 * 4 2 1 29 29 H 1.09001 * 109.47381 * 60.00118 * 5 2 1 30 30 H 1.09006 * 109.47305 * 299.99604 * 5 2 1 31 31 H 1.09006 * 109.47138 * 274.34960 * 7 6 5 32 32 H 1.08997 * 109.47414 * 34.34815 * 7 6 5 33 33 H 1.08994 * 109.47419 * 154.35498 * 7 6 5 34 34 H 1.07994 * 119.98130 * 359.97438 * 11 10 8 35 35 H 1.07988 * 119.87909 * 180.02562 * 12 11 10 36 36 H 1.08002 * 119.89245 * 179.97438 * 13 12 11 37 37 H 0.96999 * 119.99792 * 179.97438 * 19 18 16 38 38 H 1.08004 * 120.11354 * 180.32323 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2491 6 7 3.5051 -0.7218 -1.2488 7 6 4.2381 0.3767 -1.8828 8 6 4.1784 -1.7329 -0.6651 9 8 3.5724 -2.6793 -0.2021 10 6 5.6545 -1.6908 -0.5881 11 6 6.3905 -1.0559 -1.5911 12 6 7.7684 -1.0170 -1.5176 13 6 8.4254 -1.6043 -0.4533 14 6 7.7020 -2.2401 0.5516 15 16 8.5448 -2.9880 1.9061 16 6 8.7081 -4.6325 1.2946 17 1 8.3982 -4.8672 0.2870 18 6 9.2347 -5.6257 2.1074 19 7 9.6129 -5.3395 3.3353 20 14 9.4072 -7.3691 1.4594 21 1 10.7386 -7.5308 0.8216 22 1 9.2770 -8.3303 2.5838 23 1 8.3432 -7.6323 0.4574 24 6 6.3155 -2.2839 0.4862 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.7209 -0.2700 1.9980 29 1 1.6767 -0.2075 -2.1392 30 1 1.6767 -1.7490 -1.2491 31 1 4.3524 0.1707 -2.9471 32 1 3.6853 1.3067 -1.7501 33 1 5.2219 0.4701 -1.4232 34 1 5.8813 -0.5952 -2.4246 35 1 8.3349 -0.5251 -2.2943 36 1 9.5037 -1.5709 -0.4016 37 1 9.9808 -6.0341 3.9037 38 1 5.7513 -2.7720 1.2672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304961757.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:10 Heat of formation + Delta-G solvation = -70.868557 kcal Electronic energy + Delta-G solvation = -21125.170752 eV Core-core repulsion = 17865.405425 eV Total energy + Delta-G solvation = -3259.765327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.45373 -39.34433 -38.26910 -36.44856 -34.66554 -33.04999 -31.99665 -31.65756 -28.39450 -27.74353 -27.30153 -24.23346 -23.69541 -22.40203 -20.84699 -19.84786 -18.66279 -18.03762 -17.68894 -17.17381 -16.94412 -16.66771 -16.29600 -15.80384 -15.30104 -15.13015 -14.87402 -14.60586 -14.35110 -13.99617 -13.82000 -13.61491 -13.42626 -13.22697 -12.98468 -12.96615 -12.85133 -12.65950 -12.48865 -12.17871 -12.02511 -11.74315 -11.25804 -11.06759 -10.89878 -10.60407 -9.98134 -9.64224 -9.60805 -8.81188 -8.40358 -6.20433 -0.08102 0.25765 1.28003 1.36112 1.44292 1.60920 1.84399 2.00976 2.23857 2.75571 2.92244 3.33735 3.40394 3.56255 3.94940 3.97949 3.99611 4.12994 4.18758 4.32287 4.39048 4.45953 4.50986 4.62659 4.72236 4.78480 4.91386 4.92350 4.94634 4.99346 5.24464 5.26074 5.32170 5.37178 5.51428 5.57933 5.89309 6.14550 6.33111 6.90774 6.99811 7.17796 8.66707 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020133 B = 0.003873 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.421679 B = 7228.204271 C = 7827.486949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.079 3.921 3 H 0.072 0.928 4 O -0.587 6.587 5 C 0.114 3.886 6 N -0.604 5.604 7 C 0.048 3.952 8 C 0.560 3.440 9 O -0.574 6.574 10 C -0.153 4.153 11 C -0.081 4.081 12 C -0.120 4.120 13 C -0.067 4.067 14 C -0.128 4.128 15 S -0.094 6.094 16 C -0.538 4.538 17 H 0.064 0.936 18 C 0.020 3.980 19 N -0.905 5.905 20 Si 0.992 3.008 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.272 1.272 24 C -0.049 4.049 25 H 0.090 0.910 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.384 0.616 29 H 0.135 0.865 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.187 0.813 35 H 0.178 0.822 36 H 0.135 0.865 37 H 0.274 0.726 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.039 17.548 -14.726 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.019 3.981 3 H 0.090 0.910 4 O -0.394 6.394 5 C -0.008 4.008 6 N -0.335 5.335 7 C -0.092 4.092 8 C 0.350 3.650 9 O -0.454 6.454 10 C -0.158 4.158 11 C -0.098 4.098 12 C -0.140 4.140 13 C -0.088 4.088 14 C -0.239 4.239 15 S 0.140 5.860 16 C -0.685 4.685 17 H 0.082 0.918 18 C -0.185 4.185 19 N -0.542 5.542 20 Si 0.813 3.187 21 H -0.184 1.184 22 H -0.195 1.195 23 H -0.197 1.197 24 C -0.071 4.071 25 H 0.109 0.891 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.233 0.767 29 H 0.153 0.847 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.204 0.796 35 H 0.196 0.804 36 H 0.153 0.847 37 H 0.084 0.916 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.647 17.052 -13.727 25.797 hybrid contribution -0.585 -1.539 -0.097 1.649 sum -14.231 15.514 -13.825 25.186 Atomic orbital electron populations 1.22385 0.94253 1.02526 1.04169 1.22407 0.94197 0.95585 0.85909 0.91043 1.86756 1.77508 1.58196 1.16921 1.21813 0.78664 1.02127 0.98201 1.47620 1.06990 1.22696 1.56243 1.22790 0.98660 0.89185 0.98584 1.18454 0.87050 0.82390 0.77143 1.90740 1.70514 1.35710 1.48426 1.19994 0.93023 1.04448 0.98344 1.22335 0.94420 0.95235 0.97850 1.21601 0.94314 0.99857 0.98185 1.22066 1.00695 0.93895 0.92137 1.22467 0.95741 1.03608 1.02097 1.83388 1.71963 1.08556 1.22087 1.23061 1.48953 0.94615 1.01860 0.91767 1.25999 0.93982 1.03798 0.94711 1.70108 1.40371 1.35725 1.07963 0.85054 0.79183 0.76275 0.78146 1.18390 1.19513 1.19665 1.21518 0.93515 0.95134 0.96928 0.89126 0.93264 0.91133 0.76736 0.84717 0.92234 0.89045 0.88568 0.89436 0.79647 0.80438 0.84727 0.91648 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 9.53 71.98 0.69 -1.48 16 2 C 0.08 1.38 3.85 30.59 0.12 1.50 16 3 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 4 O -0.59 -15.80 12.10 -145.86 -1.76 -17.57 16 5 C 0.11 2.20 5.21 86.37 0.45 2.65 16 6 N -0.60 -13.99 2.83 -850.18 -2.40 -16.39 16 7 C 0.05 0.60 8.79 127.77 1.12 1.72 16 8 C 0.56 19.89 6.89 86.79 0.60 20.49 16 9 O -0.57 -26.34 15.73 -0.74 -0.01 -26.35 16 10 C -0.15 -5.47 5.47 -20.11 -0.11 -5.58 16 11 C -0.08 -2.01 7.44 22.57 0.17 -1.84 16 12 C -0.12 -3.04 10.02 22.21 0.22 -2.82 16 13 C -0.07 -2.43 9.79 22.48 0.22 -2.21 16 14 C -0.13 -5.93 5.45 22.65 0.12 -5.81 16 15 S -0.09 -5.35 21.41 -56.49 -1.21 -6.56 16 16 C -0.54 -32.85 9.46 67.94 0.64 -32.21 16 17 H 0.06 3.92 7.79 -2.91 -0.02 3.90 16 18 C 0.02 1.20 5.49 84.84 0.47 1.67 16 19 N -0.91 -55.92 13.22 21.63 0.29 -55.63 16 20 Si 0.99 46.22 29.55 68.60 2.03 48.24 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 24 C -0.05 -2.24 9.35 22.70 0.21 -2.03 16 25 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.38 7.15 9.08 -74.06 -0.67 6.48 16 29 H 0.14 1.28 8.07 -2.39 -0.02 1.26 16 30 H 0.06 1.56 7.37 -2.38 -0.02 1.54 16 31 H 0.09 0.61 7.41 -2.38 -0.02 0.59 16 32 H 0.10 0.65 8.10 -2.39 -0.02 0.63 16 33 H 0.09 1.26 4.74 -2.39 -0.01 1.25 16 34 H 0.19 2.73 4.75 -2.91 -0.01 2.71 16 35 H 0.18 2.68 8.06 -2.92 -0.02 2.66 16 36 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 37 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 38 H 0.09 4.88 7.95 -2.91 -0.02 4.86 16 Total: -1.00 -87.81 335.18 2.25 -85.56 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.41 Total: 14.65 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 4.92 Total: -25.94 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -2.12 Total: -72.02 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -1.78 Total: -43.92 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -1.21 Total: -6.56 kcal Total: -87.81 2.25 -85.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304961757.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.688 kcal (2) G-P(sol) polarization free energy of solvation -87.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds