Wall clock time and date at job start Tue Mar 31 2020 07:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47445 * 2 1 4 4 C 1.53002 * 109.46967 * 119.99944 * 2 1 3 5 5 O 1.42900 * 109.47339 * 294.99658 * 4 2 1 6 6 C 1.53004 * 109.46792 * 239.99469 * 2 1 3 7 7 N 1.46494 * 109.46929 * 65.00804 * 6 2 1 8 8 C 1.34776 * 119.99993 * 180.02562 * 7 6 2 9 9 O 1.21550 * 120.00133 * 359.97438 * 8 7 6 10 10 C 1.47868 * 119.99647 * 179.97438 * 8 7 6 11 11 C 1.39668 * 120.10603 * 359.71746 * 10 8 7 12 12 C 1.38041 * 120.04180 * 179.79454 * 11 10 8 13 13 C 1.38184 * 120.24177 * 0.46151 * 12 11 10 14 14 C 1.39183 * 120.19975 * 359.79308 * 13 12 11 15 15 S 1.76201 * 120.01699 * 179.97438 * 14 13 12 16 16 C 1.76196 * 99.99840 * 265.52566 * 15 14 13 17 17 H 1.08003 * 120.00390 * 5.12145 * 16 15 14 18 18 C 1.38731 * 119.99940 * 185.11861 * 16 15 14 19 19 N 1.31625 * 119.99953 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00007 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47415 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46906 * 120.00166 * 20 18 16 23 23 H 1.48502 * 109.47284 * 239.99852 * 20 18 16 24 24 C 1.38877 * 119.95883 * 359.97438 * 14 13 12 25 25 H 1.08993 * 109.47236 * 59.99835 * 1 2 3 26 26 H 1.09006 * 109.46853 * 300.00034 * 1 2 3 27 27 H 1.09002 * 109.47519 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47338 * 55.00073 * 4 2 1 29 29 H 1.09000 * 109.47436 * 174.99305 * 4 2 1 30 30 H 0.96702 * 113.99970 * 179.97438 * 5 4 2 31 31 H 1.09005 * 109.46633 * 184.99908 * 6 2 1 32 32 H 1.08994 * 109.47100 * 305.00191 * 6 2 1 33 33 H 0.97006 * 120.00098 * 359.97438 * 7 6 2 34 34 H 1.08006 * 119.97650 * 359.97438 * 11 10 8 35 35 H 1.07998 * 119.87778 * 180.21320 * 12 11 10 36 36 H 1.07995 * 119.89664 * 179.76599 * 13 12 11 37 37 H 0.97002 * 120.00253 * 180.02562 * 19 18 16 38 38 H 1.08000 * 120.11551 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 1.6620 0.0168 2.4131 6 6 2.0399 -0.7214 -1.2492 7 7 1.6525 0.0352 -2.4423 8 6 1.9956 -0.4138 -3.6659 9 8 2.6268 -1.4463 -3.7795 10 6 1.6039 0.3496 -4.8702 11 6 0.8735 1.5332 -4.7425 12 6 0.5123 2.2471 -5.8674 13 6 0.8625 1.7905 -7.1237 14 6 1.5858 0.6095 -7.2629 15 16 2.0292 0.0314 -8.8672 16 6 0.6899 -1.0710 -9.1761 17 1 -0.1270 -1.1388 -8.4729 18 6 0.6845 -1.8518 -10.3228 19 7 1.6802 -1.7695 -11.1797 20 14 -0.7358 -3.0200 -10.6507 21 1 -1.7208 -2.9247 -9.5436 22 1 -1.3933 -2.6528 -11.9306 23 1 -0.2226 -4.4107 -10.7391 24 6 1.9577 -0.1128 -6.1366 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6054 -1.7199 1.2952 29 1 3.1263 -0.7996 1.2056 30 1 1.9526 -0.3833 3.2441 31 1 3.1263 -0.7996 -1.2055 32 1 1.6053 -1.7199 -1.2950 33 1 1.1484 0.8590 -2.3518 34 1 0.5936 1.8916 -3.7628 35 1 -0.0496 3.1638 -5.7654 36 1 0.5737 2.3515 -8.0002 37 1 1.6763 -2.3152 -11.9817 38 1 2.5193 -1.0293 -6.2416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305198671.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:20 Heat of formation + Delta-G solvation = -77.347378 kcal Electronic energy + Delta-G solvation = -20300.602419 eV Core-core repulsion = 17040.556149 eV Total energy + Delta-G solvation = -3260.046270 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.04484 -38.27680 -37.60501 -35.66305 -32.92894 -32.50600 -30.78964 -30.48173 -27.20756 -25.95609 -25.56863 -23.25262 -22.18737 -20.86512 -20.28335 -18.39306 -17.81895 -17.26069 -16.33788 -15.99109 -15.58403 -15.07639 -15.05156 -14.85016 -14.51692 -14.07987 -13.88963 -13.59339 -13.38876 -13.01560 -12.94100 -12.79986 -12.25847 -11.68866 -11.62470 -11.44569 -11.15658 -11.11982 -11.11214 -11.09651 -10.70252 -10.41097 -9.97629 -9.79051 -9.20028 -9.16726 -9.00962 -8.58711 -8.02957 -6.71218 -6.28643 -4.02485 1.16054 1.66470 2.99124 3.04406 3.19679 3.23015 3.29054 3.47202 3.86720 4.08705 4.26194 4.41921 4.46452 4.70573 4.86869 5.01970 5.07550 5.09426 5.12539 5.19329 5.23775 5.42561 5.47619 5.53181 5.57560 5.73084 5.83958 5.87250 5.93808 5.98790 6.24951 6.32003 6.58200 6.63402 6.93012 7.17750 7.18793 7.46466 7.57948 8.27262 8.33104 9.17350 10.78162 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023457 B = 0.003001 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.365289 B = 9327.102979 C = 9767.234168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 H 0.085 0.915 4 C 0.083 3.917 5 O -0.572 6.572 6 C 0.126 3.874 7 N -0.730 5.730 8 C 0.564 3.436 9 O -0.534 6.534 10 C -0.155 4.155 11 C -0.090 4.090 12 C -0.141 4.141 13 C -0.055 4.055 14 C -0.107 4.107 15 S -0.036 6.036 16 C -0.518 4.518 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.870 5.870 20 Si 0.921 3.079 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.018 4.018 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.381 0.619 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.399 0.601 34 H 0.116 0.884 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.269 0.731 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.775 6.059 22.501 23.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 H 0.103 0.897 4 C 0.005 3.995 5 O -0.378 6.378 6 C 0.002 3.998 7 N -0.384 5.384 8 C 0.352 3.648 9 O -0.411 6.411 10 C -0.160 4.160 11 C -0.109 4.109 12 C -0.161 4.161 13 C -0.076 4.076 14 C -0.217 4.217 15 S 0.199 5.801 16 C -0.666 4.666 17 H 0.094 0.906 18 C -0.136 4.136 19 N -0.506 5.506 20 Si 0.747 3.253 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.204 1.204 24 C -0.040 4.040 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.228 0.772 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.235 0.765 34 H 0.134 0.866 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.079 0.921 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.581 5.860 21.077 21.884 hybrid contribution -1.884 -1.013 1.077 2.395 sum -2.465 4.846 22.153 22.811 Atomic orbital electron populations 1.21805 0.93930 1.02372 1.02197 1.21328 0.97431 1.00901 0.92671 0.89691 1.22070 0.98245 0.94107 0.85092 1.86449 1.81629 1.53319 1.16396 1.21223 1.00211 0.95409 0.82940 1.45837 1.59007 1.28105 1.05463 1.18407 0.78719 0.84655 0.82977 1.90774 1.39681 1.24059 1.86628 1.19848 1.05136 0.97609 0.93362 1.21131 0.97307 0.94127 0.98353 1.21060 1.02082 1.00407 0.92517 1.21967 0.93365 0.95021 0.97255 1.22854 1.00070 0.97100 1.01693 1.83611 1.36120 1.54294 1.06081 1.22877 1.06612 1.26805 1.10294 0.90571 1.25009 0.96979 0.96505 0.95138 1.69997 1.30391 1.39184 1.10980 0.86064 0.80966 0.79916 0.78338 1.19499 1.20482 1.20430 1.21953 0.94116 0.98184 0.89766 0.92530 0.91611 0.92463 0.93142 0.93196 0.77217 0.91226 0.91129 0.76461 0.86570 0.85837 0.85052 0.92106 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.96 37.16 0.33 -0.78 16 2 C -0.10 -0.80 2.66 -90.62 -0.24 -1.04 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 4 C 0.08 0.55 6.43 37.16 0.24 0.79 16 5 O -0.57 -3.99 13.20 -35.23 -0.46 -4.45 16 6 C 0.13 1.24 5.06 -4.04 -0.02 1.22 16 7 N -0.73 -8.39 5.23 -61.25 -0.32 -8.71 16 8 C 0.56 9.12 7.77 -12.32 -0.10 9.03 16 9 O -0.53 -10.63 16.34 5.32 0.09 -10.54 16 10 C -0.15 -2.61 5.87 -105.00 -0.62 -3.23 16 11 C -0.09 -1.23 9.54 -39.12 -0.37 -1.61 16 12 C -0.14 -2.01 10.02 -39.67 -0.40 -2.41 16 13 C -0.05 -0.98 9.79 -39.25 -0.38 -1.37 16 14 C -0.11 -2.28 5.45 -38.99 -0.21 -2.50 16 15 S -0.04 -0.92 21.41 -107.50 -2.30 -3.22 16 16 C -0.52 -14.68 9.46 30.91 0.29 -14.39 16 17 H 0.08 2.15 7.79 -52.48 -0.41 1.74 16 18 C 0.07 2.04 5.49 -17.46 -0.10 1.95 16 19 N -0.87 -25.53 13.22 55.49 0.73 -24.80 16 20 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 C -0.02 -0.38 9.34 -38.92 -0.36 -0.74 16 25 H 0.06 0.42 7.18 -51.93 -0.37 0.04 16 26 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.38 0.99 9.12 45.56 0.42 1.40 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.40 3.58 5.68 -40.82 -0.23 3.35 16 34 H 0.12 1.12 6.40 -52.48 -0.34 0.78 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.14 3.08 7.65 -52.49 -0.40 2.68 16 LS Contribution 341.05 15.07 5.14 5.14 Total: -1.00 -34.18 341.05 -8.35 -42.52 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.26 Total: 2.63 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -1.94 Total: -15.09 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.41 Total: -33.50 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.38 Total: -14.99 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.22 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.18 -8.35 -42.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305198671.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.824 kcal (2) G-P(sol) polarization free energy of solvation -34.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds