Wall clock time and date at job start Tue Mar 31 2020 07:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47445 * 2 1 4 4 C 1.53002 * 109.46967 * 119.99944 * 2 1 3 5 5 O 1.42900 * 109.47339 * 294.99658 * 4 2 1 6 6 C 1.53004 * 109.46792 * 239.99469 * 2 1 3 7 7 N 1.46494 * 109.46929 * 65.00804 * 6 2 1 8 8 C 1.34776 * 119.99993 * 180.02562 * 7 6 2 9 9 O 1.21550 * 120.00133 * 359.97438 * 8 7 6 10 10 C 1.47868 * 119.99647 * 179.97438 * 8 7 6 11 11 C 1.39668 * 120.10603 * 359.71746 * 10 8 7 12 12 C 1.38041 * 120.04180 * 179.79454 * 11 10 8 13 13 C 1.38184 * 120.24177 * 0.46151 * 12 11 10 14 14 C 1.39183 * 120.19975 * 359.79308 * 13 12 11 15 15 S 1.76201 * 120.01699 * 179.97438 * 14 13 12 16 16 C 1.76196 * 99.99840 * 265.52566 * 15 14 13 17 17 H 1.08003 * 120.00390 * 5.12145 * 16 15 14 18 18 C 1.38731 * 119.99940 * 185.11861 * 16 15 14 19 19 N 1.31625 * 119.99953 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00007 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47415 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46906 * 120.00166 * 20 18 16 23 23 H 1.48502 * 109.47284 * 239.99852 * 20 18 16 24 24 C 1.38877 * 119.95883 * 359.97438 * 14 13 12 25 25 H 1.08993 * 109.47236 * 59.99835 * 1 2 3 26 26 H 1.09006 * 109.46853 * 300.00034 * 1 2 3 27 27 H 1.09002 * 109.47519 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47338 * 55.00073 * 4 2 1 29 29 H 1.09000 * 109.47436 * 174.99305 * 4 2 1 30 30 H 0.96702 * 113.99970 * 179.97438 * 5 4 2 31 31 H 1.09005 * 109.46633 * 184.99908 * 6 2 1 32 32 H 1.08994 * 109.47100 * 305.00191 * 6 2 1 33 33 H 0.97006 * 120.00098 * 359.97438 * 7 6 2 34 34 H 1.08006 * 119.97650 * 359.97438 * 11 10 8 35 35 H 1.07998 * 119.87778 * 180.21320 * 12 11 10 36 36 H 1.07995 * 119.89664 * 179.76599 * 13 12 11 37 37 H 0.97002 * 120.00253 * 180.02562 * 19 18 16 38 38 H 1.08000 * 120.11551 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 1.6620 0.0168 2.4131 6 6 2.0399 -0.7214 -1.2492 7 7 1.6525 0.0352 -2.4423 8 6 1.9956 -0.4138 -3.6659 9 8 2.6268 -1.4463 -3.7795 10 6 1.6039 0.3496 -4.8702 11 6 0.8735 1.5332 -4.7425 12 6 0.5123 2.2471 -5.8674 13 6 0.8625 1.7905 -7.1237 14 6 1.5858 0.6095 -7.2629 15 16 2.0292 0.0314 -8.8672 16 6 0.6899 -1.0710 -9.1761 17 1 -0.1270 -1.1388 -8.4729 18 6 0.6845 -1.8518 -10.3228 19 7 1.6802 -1.7695 -11.1797 20 14 -0.7358 -3.0200 -10.6507 21 1 -1.7208 -2.9247 -9.5436 22 1 -1.3933 -2.6528 -11.9306 23 1 -0.2226 -4.4107 -10.7391 24 6 1.9577 -0.1128 -6.1366 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6054 -1.7199 1.2952 29 1 3.1263 -0.7996 1.2056 30 1 1.9526 -0.3833 3.2441 31 1 3.1263 -0.7996 -1.2055 32 1 1.6053 -1.7199 -1.2950 33 1 1.1484 0.8590 -2.3518 34 1 0.5936 1.8916 -3.7628 35 1 -0.0496 3.1638 -5.7654 36 1 0.5737 2.3515 -8.0002 37 1 1.6763 -2.3152 -11.9817 38 1 2.5193 -1.0293 -6.2416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305198671.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:20 Heat of formation + Delta-G solvation = -102.663427 kcal Electronic energy + Delta-G solvation = -20301.700205 eV Core-core repulsion = 17040.556149 eV Total energy + Delta-G solvation = -3261.144056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.28362 -39.34225 -38.49704 -36.50821 -34.66036 -33.88560 -32.07747 -31.82027 -27.88962 -27.74703 -26.76028 -24.48007 -23.53786 -21.78698 -21.31690 -19.97513 -19.05599 -18.27333 -17.42184 -16.94461 -16.92034 -16.73413 -16.50664 -16.00230 -15.69396 -15.27205 -14.85539 -14.77215 -14.63242 -14.42091 -13.91510 -13.66617 -13.38183 -13.26204 -13.06642 -12.98750 -12.66193 -12.40018 -12.31227 -12.09619 -11.74588 -11.68314 -11.27299 -11.15527 -10.87470 -10.75635 -10.30028 -9.90355 -9.70286 -8.81290 -8.40062 -6.20073 -0.18997 0.25205 1.29188 1.35922 1.46124 1.64382 1.78360 2.01067 2.23764 2.79823 2.92991 3.31883 3.41145 3.62895 3.82979 3.88946 3.94315 4.02415 4.20209 4.35758 4.47041 4.48640 4.50632 4.60691 4.67242 4.75550 4.88597 4.92233 4.99455 5.18926 5.21422 5.30500 5.32367 5.38084 5.39083 5.50415 5.85974 6.15318 6.42869 6.90283 7.00393 7.10668 8.67308 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023457 B = 0.003001 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.365289 B = 9327.102979 C = 9767.234168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.090 0.910 4 C 0.082 3.918 5 O -0.588 6.588 6 C 0.125 3.875 7 N -0.705 5.705 8 C 0.562 3.438 9 O -0.582 6.582 10 C -0.158 4.158 11 C -0.063 4.063 12 C -0.120 4.120 13 C -0.063 4.063 14 C -0.129 4.129 15 S -0.097 6.097 16 C -0.534 4.534 17 H 0.067 0.933 18 C 0.019 3.981 19 N -0.906 5.906 20 Si 0.993 3.007 21 H -0.266 1.266 22 H -0.265 1.265 23 H -0.272 1.272 24 C -0.045 4.045 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.399 0.601 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.416 0.584 34 H 0.173 0.827 35 H 0.176 0.824 36 H 0.135 0.865 37 H 0.274 0.726 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.995 7.776 25.326 26.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.108 0.892 4 C 0.004 3.996 5 O -0.397 6.397 6 C 0.002 3.998 7 N -0.359 5.359 8 C 0.350 3.650 9 O -0.463 6.463 10 C -0.162 4.162 11 C -0.082 4.082 12 C -0.140 4.140 13 C -0.084 4.084 14 C -0.240 4.240 15 S 0.138 5.862 16 C -0.681 4.681 17 H 0.085 0.915 18 C -0.187 4.187 19 N -0.543 5.543 20 Si 0.815 3.185 21 H -0.190 1.190 22 H -0.190 1.190 23 H -0.198 1.198 24 C -0.067 4.067 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.249 0.751 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.255 0.745 34 H 0.190 0.810 35 H 0.194 0.806 36 H 0.153 0.847 37 H 0.083 0.917 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.811 7.617 23.955 25.293 hybrid contribution -1.180 -1.434 0.409 1.902 sum -3.991 6.183 24.364 25.451 Atomic orbital electron populations 1.21803 0.93701 1.02247 1.02476 1.21240 0.97465 1.00866 0.91877 0.89153 1.22049 0.98708 0.94108 0.84733 1.86390 1.81958 1.53967 1.17374 1.21329 1.00144 0.95296 0.83068 1.45646 1.57535 1.28292 1.04381 1.18372 0.78477 0.84043 0.84065 1.90758 1.42038 1.26166 1.87330 1.19955 1.05332 0.98923 0.92040 1.21712 0.93939 0.91598 1.00912 1.21560 1.00436 1.01487 0.90485 1.22086 0.92984 0.93670 0.99622 1.22497 1.03558 0.99335 0.98615 1.83493 1.37062 1.54698 1.10933 1.23086 1.07002 1.27546 1.10508 0.91489 1.26021 0.99835 0.98114 0.94692 1.70116 1.32375 1.40226 1.11564 0.84985 0.77436 0.77464 0.78616 1.19006 1.19002 1.19760 1.21630 0.95744 0.97707 0.91616 0.91897 0.91642 0.92850 0.92604 0.92493 0.75120 0.91548 0.91857 0.74534 0.80959 0.80638 0.84680 0.91690 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.96 71.98 0.65 -1.12 16 2 C -0.10 -1.19 2.66 -10.79 -0.03 -1.22 16 3 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 4 C 0.08 0.89 6.43 71.98 0.46 1.35 16 5 O -0.59 -6.68 13.20 -148.98 -1.97 -8.64 16 6 C 0.13 2.21 5.06 86.38 0.44 2.65 16 7 N -0.71 -14.22 5.23 -465.96 -2.44 -16.66 16 8 C 0.56 17.65 7.77 86.79 0.67 18.33 16 9 O -0.58 -23.80 16.34 -3.87 -0.06 -23.86 16 10 C -0.16 -5.13 5.87 -20.11 -0.12 -5.25 16 11 C -0.06 -1.43 9.54 22.57 0.22 -1.22 16 12 C -0.12 -2.88 10.02 22.21 0.22 -2.66 16 13 C -0.06 -2.17 9.79 22.48 0.22 -1.95 16 14 C -0.13 -5.72 5.45 22.65 0.12 -5.60 16 15 S -0.10 -5.33 21.41 -56.49 -1.21 -6.54 16 16 C -0.53 -31.61 9.46 67.94 0.64 -30.97 16 17 H 0.07 3.93 7.79 -2.91 -0.02 3.91 16 18 C 0.02 1.07 5.49 84.84 0.47 1.54 16 19 N -0.91 -55.05 13.22 21.64 0.29 -54.76 16 20 Si 0.99 44.96 29.55 68.60 2.03 46.99 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 24 C -0.05 -1.93 9.34 22.70 0.21 -1.72 16 25 H 0.06 0.67 7.18 -2.39 -0.02 0.65 16 26 H 0.06 0.83 7.82 -2.38 -0.02 0.81 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.40 1.12 9.12 -74.06 -0.68 0.44 16 31 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.42 5.46 5.68 -92.70 -0.53 4.94 16 34 H 0.17 2.02 6.40 -2.91 -0.02 2.00 16 35 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.14 4.50 8.06 -2.91 -0.02 4.47 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.10 5.01 7.65 -2.91 -0.02 4.99 16 Total: -1.00 -80.32 341.05 0.70 -79.63 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -0.11 Total: 11.69 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: 4.18 Total: -27.85 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -2.15 Total: -71.42 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -2.03 Total: -32.50 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: -5.33 SS G_CDS: -1.21 Total: -6.54 kcal Total: -80.32 0.70 -79.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305198671.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.037 kcal (2) G-P(sol) polarization free energy of solvation -80.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds