Wall clock time and date at job start Tue Mar 31 2020 07:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46966 * 2 1 4 4 C 1.52997 * 109.47156 * 120.00121 * 2 1 3 5 5 C 1.53002 * 109.47172 * 184.99941 * 4 2 1 6 6 O 1.42894 * 109.47158 * 180.02562 * 5 4 2 7 7 N 1.46493 * 109.47079 * 240.00083 * 2 1 3 8 8 C 1.34783 * 120.00266 * 84.99728 * 7 2 1 9 9 O 1.21554 * 119.99505 * 0.02562 * 8 7 2 10 10 C 1.47857 * 120.00551 * 180.02562 * 8 7 2 11 11 C 1.39674 * 120.09834 * 0.02598 * 10 8 7 12 12 C 1.38046 * 120.04015 * 179.97438 * 11 10 8 13 13 C 1.38176 * 120.23908 * 359.76355 * 12 11 10 14 14 C 1.39179 * 120.20513 * 0.51284 * 13 12 11 15 15 S 1.76194 * 120.02163 * 179.73865 * 14 13 12 16 16 C 1.76196 * 100.00182 * 265.25136 * 15 14 13 17 17 H 1.08000 * 120.00393 * 5.12593 * 16 15 14 18 18 C 1.38736 * 120.00006 * 185.12109 * 16 15 14 19 19 N 1.31616 * 119.99932 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99686 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47076 * 59.99906 * 20 18 16 22 22 H 1.48496 * 109.46794 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46962 * 299.99839 * 20 18 16 24 24 C 1.38875 * 119.95687 * 359.47003 * 14 13 12 25 25 H 1.08997 * 109.47405 * 59.99503 * 1 2 3 26 26 H 1.08996 * 109.47315 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47089 * 299.99679 * 1 2 3 28 28 H 1.09000 * 109.47459 * 305.00046 * 4 2 1 29 29 H 1.09005 * 109.47244 * 65.00011 * 4 2 1 30 30 H 1.09000 * 109.47015 * 300.00377 * 5 4 2 31 31 H 1.08998 * 109.47297 * 59.99687 * 5 4 2 32 32 H 0.96703 * 114.00240 * 179.97438 * 6 5 4 33 33 H 0.97000 * 120.00523 * 265.00431 * 7 2 1 34 34 H 1.08002 * 119.98410 * 359.97438 * 11 10 8 35 35 H 1.07996 * 119.87866 * 180.02562 * 12 11 10 36 36 H 1.08006 * 119.89861 * 180.27092 * 13 12 11 37 37 H 0.97004 * 119.99833 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.12505 * 180.25503 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 8 4.0412 -1.2875 2.4800 7 7 2.0183 -0.6906 -1.1961 8 6 2.1470 -0.0182 -2.3572 9 8 1.8583 1.1613 -2.4116 10 6 2.6393 -0.7153 -3.5646 11 6 2.9711 -2.0707 -3.5046 12 6 3.4301 -2.7205 -4.6327 13 6 3.5588 -2.0359 -5.8261 14 6 3.2365 -0.6838 -5.8960 15 16 3.4090 0.1861 -7.4185 16 6 5.0196 0.8668 -7.2013 17 1 5.6043 0.6039 -6.3322 18 6 5.5367 1.7405 -8.1468 19 7 4.8244 2.0604 -9.2063 20 14 7.2445 2.4616 -7.9168 21 1 8.2421 1.3631 -7.8598 22 1 7.5604 3.3592 -9.0568 23 1 7.2883 3.2363 -6.6506 24 6 2.7736 -0.0219 -4.7662 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6054 -0.2618 2.1370 29 1 1.7516 -1.7716 1.2055 30 1 3.9994 -1.0728 0.4259 31 1 3.8532 0.4369 1.3573 32 1 5.0021 -1.2599 2.5854 33 1 2.2489 -1.6317 -1.1527 34 1 2.8685 -2.6108 -2.5750 35 1 3.6855 -3.7686 -4.5835 36 1 3.9143 -2.5508 -6.7065 37 1 5.1858 2.6716 -9.8672 38 1 2.5188 1.0263 -4.8184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305208408.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:54 Heat of formation + Delta-G solvation = -77.348514 kcal Electronic energy + Delta-G solvation = -20595.548649 eV Core-core repulsion = 17335.502330 eV Total energy + Delta-G solvation = -3260.046319 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.15403 -38.19871 -37.37802 -35.79305 -32.52050 -32.37365 -30.64495 -30.28815 -29.14742 -25.58072 -24.28148 -23.25539 -22.33970 -21.13229 -20.45005 -18.40637 -17.70525 -17.24797 -16.60453 -15.69024 -15.30723 -15.14736 -15.02637 -14.85949 -14.40693 -14.34253 -13.79294 -13.45537 -13.41141 -13.02795 -12.71111 -12.30745 -12.26820 -12.10895 -11.67841 -11.41207 -11.21364 -11.15966 -11.14139 -11.08237 -10.72427 -10.32634 -9.99807 -9.78522 -9.22552 -9.16434 -9.03346 -8.60916 -8.04753 -6.72527 -6.29495 -4.03689 1.14258 1.64653 3.00927 3.07001 3.20358 3.22422 3.25762 3.45392 3.74801 4.07394 4.24749 4.61222 4.63169 4.76251 4.91213 5.05449 5.07250 5.13299 5.14749 5.21265 5.24499 5.45583 5.46400 5.53976 5.62826 5.70183 5.82299 5.85703 5.98190 6.01712 6.23389 6.38535 6.56692 6.61711 6.91477 7.17113 7.25133 7.46515 7.56057 8.26854 8.31184 9.16101 10.77210 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.017928 B = 0.003492 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.469224 B = 8016.100629 C = 8421.915710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.091 0.909 4 C -0.126 4.126 5 C 0.073 3.927 6 O -0.577 6.577 7 N -0.730 5.730 8 C 0.565 3.435 9 O -0.533 6.533 10 C -0.155 4.155 11 C -0.090 4.090 12 C -0.141 4.141 13 C -0.055 4.055 14 C -0.107 4.107 15 S -0.034 6.034 16 C -0.521 4.521 17 H 0.075 0.925 18 C 0.074 3.926 19 N -0.870 5.870 20 Si 0.921 3.079 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.273 1.273 24 C -0.019 4.019 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.381 0.619 33 H 0.398 0.602 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.270 0.730 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.903 -9.178 18.615 21.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.109 0.891 4 C -0.164 4.164 5 C -0.005 4.005 6 O -0.383 6.383 7 N -0.383 5.383 8 C 0.353 3.647 9 O -0.410 6.410 10 C -0.160 4.160 11 C -0.110 4.110 12 C -0.161 4.161 13 C -0.076 4.076 14 C -0.217 4.217 15 S 0.200 5.800 16 C -0.669 4.669 17 H 0.093 0.907 18 C -0.135 4.135 19 N -0.505 5.505 20 Si 0.747 3.253 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.198 1.198 24 C -0.041 4.041 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.228 0.772 33 H 0.234 0.766 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.149 0.851 37 H 0.080 0.920 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.487 -8.174 17.542 20.115 hybrid contribution 2.591 -0.060 1.119 2.823 sum -2.896 -8.233 18.661 20.601 Atomic orbital electron populations 1.22161 0.94700 1.02321 1.02898 1.20871 0.94456 0.97637 0.83084 0.89068 1.21818 0.94484 1.02141 0.97953 1.22207 0.94813 0.96055 0.87428 1.86431 1.27444 1.78751 1.45673 1.46054 1.68647 1.14041 1.09603 1.18422 0.76886 0.86423 0.82949 1.90773 1.49760 1.15595 1.84885 1.19869 1.07344 0.94620 0.94187 1.21132 0.98381 0.93236 0.98202 1.21059 1.02090 0.99880 0.93047 1.21965 0.94268 0.93920 0.97479 1.22858 1.00454 0.96901 1.01503 1.83607 1.24483 1.60805 1.11094 1.22795 0.99775 1.32589 1.11692 0.90686 1.24998 0.98765 0.95194 0.94550 1.69974 1.37235 1.33338 1.09983 0.86180 0.82179 0.78942 0.78043 1.19812 1.20702 1.19807 1.21956 0.91943 1.00207 0.89944 0.91530 0.92347 0.91564 0.89573 0.90593 0.93289 0.93375 0.77188 0.76628 0.86579 0.85864 0.85068 0.91976 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.48 37.16 0.35 -1.13 16 2 C 0.14 1.40 2.57 -67.94 -0.17 1.23 16 3 H 0.09 1.05 7.58 -51.93 -0.39 0.65 16 4 C -0.13 -0.98 5.12 -26.73 -0.14 -1.12 16 5 C 0.07 0.60 6.93 37.16 0.26 0.86 16 6 O -0.58 -4.88 13.66 -35.23 -0.48 -5.36 16 7 N -0.73 -8.02 4.48 -54.75 -0.25 -8.27 16 8 C 0.56 8.82 7.74 -12.32 -0.10 8.72 16 9 O -0.53 -10.28 16.01 5.32 0.09 -10.20 16 10 C -0.16 -2.56 5.87 -105.00 -0.62 -3.18 16 11 C -0.09 -1.21 9.54 -39.12 -0.37 -1.58 16 12 C -0.14 -1.98 10.02 -39.67 -0.40 -2.38 16 13 C -0.06 -0.98 9.79 -39.25 -0.38 -1.36 16 14 C -0.11 -2.26 5.45 -39.00 -0.21 -2.47 16 15 S -0.03 -0.89 21.40 -107.50 -2.30 -3.19 16 16 C -0.52 -14.68 9.46 30.92 0.29 -14.39 16 17 H 0.07 2.09 7.79 -52.49 -0.41 1.68 16 18 C 0.07 2.07 5.49 -17.46 -0.10 1.98 16 19 N -0.87 -25.42 13.22 55.49 0.73 -24.69 16 20 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.02 -0.38 9.34 -38.92 -0.36 -0.74 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.40 7.75 -51.93 -0.40 0.00 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.38 1.69 9.12 45.56 0.42 2.10 16 33 H 0.40 3.40 6.63 -40.82 -0.27 3.13 16 34 H 0.12 1.08 6.40 -52.49 -0.34 0.75 16 35 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.13 2.21 8.06 -52.48 -0.42 1.79 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.14 3.04 7.65 -52.49 -0.40 2.64 16 LS Contribution 342.66 15.07 5.16 5.16 Total: -1.00 -33.60 342.66 -8.33 -41.93 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.31 Total: 3.83 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -1.95 Total: -15.58 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.49 Total: -32.95 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.40 Total: -15.56 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.30 Total: -3.19 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.60 -8.33 -41.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305208408.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.415 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds