Wall clock time and date at job start Tue Mar 31 2020 07:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47058 * 2 1 4 4 C 1.53004 * 109.46875 * 239.99943 * 2 1 3 5 5 C 1.53002 * 109.46930 * 175.00088 * 4 2 1 6 6 O 1.42899 * 109.47180 * 180.02562 * 5 4 2 7 7 N 1.46492 * 109.47240 * 119.99945 * 2 1 3 8 8 C 1.34784 * 120.00217 * 275.00229 * 7 2 1 9 9 O 1.21552 * 119.99611 * 359.97438 * 8 7 2 10 10 C 1.47860 * 119.99972 * 179.97438 * 8 7 2 11 11 C 1.39661 * 120.10534 * 359.97438 * 10 8 7 12 12 C 1.38047 * 120.04191 * 180.02562 * 11 10 8 13 13 C 1.38176 * 120.23812 * 359.67598 * 12 11 10 14 14 C 1.39179 * 120.20540 * 0.60009 * 13 12 11 15 15 S 1.76194 * 120.02163 * 179.69520 * 14 13 12 16 16 C 1.76196 * 100.00182 * 265.25136 * 15 14 13 17 17 H 1.08000 * 120.00393 * 5.12593 * 16 15 14 18 18 C 1.38736 * 120.00006 * 185.12109 * 16 15 14 19 19 N 1.31616 * 119.99932 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99686 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46964 * 60.00073 * 20 18 16 22 22 H 1.48496 * 109.46794 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46962 * 299.99839 * 20 18 16 24 24 C 1.38875 * 119.95687 * 359.42658 * 14 13 12 25 25 H 1.08997 * 109.47527 * 59.99896 * 1 2 3 26 26 H 1.09004 * 109.47509 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47175 * 300.00108 * 1 2 3 28 28 H 1.08997 * 109.47057 * 295.00047 * 4 2 1 29 29 H 1.08995 * 109.47267 * 54.99955 * 4 2 1 30 30 H 1.08997 * 109.47217 * 299.99861 * 5 4 2 31 31 H 1.08995 * 109.47254 * 59.99859 * 5 4 2 32 32 H 0.96695 * 114.00271 * 180.02562 * 6 5 4 33 33 H 0.96996 * 120.00373 * 94.99364 * 7 2 1 34 34 H 1.08002 * 119.98248 * 0.02562 * 11 10 8 35 35 H 1.07993 * 119.87788 * 179.97438 * 12 11 10 36 36 H 1.08006 * 119.89818 * 180.31471 * 13 12 11 37 37 H 0.97004 * 119.99833 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.12505 * 180.25503 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 8 4.0411 -1.2865 -2.4808 7 7 2.0183 -0.6906 1.1961 8 6 2.1470 -0.0182 2.3572 9 8 1.8583 1.1613 2.4116 10 6 2.6394 -0.7154 3.5645 11 6 2.9712 -2.0707 3.5045 12 6 3.4303 -2.7204 4.6327 13 6 3.5699 -2.0331 5.8232 14 6 3.2368 -0.6837 5.8959 15 16 3.4092 0.1861 7.4184 16 6 1.7696 0.0337 8.0453 17 1 1.0428 -0.5653 7.5167 18 6 1.4121 0.6832 9.2179 19 7 2.2979 1.4128 9.8624 20 14 -0.3261 0.5210 9.8828 21 1 -0.6184 -0.9082 10.1608 22 1 -0.4513 1.3056 11.1374 23 1 -1.2904 1.0373 8.8784 24 6 2.7737 -0.0219 4.7662 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7515 -1.7715 -1.2056 29 1 1.6053 -0.2618 -2.1370 30 1 3.8532 0.4369 -1.3574 31 1 3.9994 -1.0728 -0.4260 32 1 5.0018 -1.2589 -2.5862 33 1 2.2489 -1.6317 1.1526 34 1 2.8686 -2.6108 2.5749 35 1 3.6857 -3.7686 4.5834 36 1 3.9344 -2.5457 6.7012 37 1 2.0478 1.8672 10.6822 38 1 2.5183 1.0262 4.8185 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305208409.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:56 Heat of formation + Delta-G solvation = -102.086294 kcal Electronic energy + Delta-G solvation = -20572.613724 eV Core-core repulsion = 17311.494694 eV Total energy + Delta-G solvation = -3261.119030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.34930 -39.38166 -38.21700 -36.68464 -34.66407 -33.47818 -31.97016 -31.45399 -29.87998 -27.75276 -25.40155 -24.12796 -23.62437 -22.04930 -21.61441 -20.02691 -19.03937 -18.22061 -17.62991 -16.94241 -16.88907 -16.58707 -16.15472 -16.08359 -15.55734 -15.31156 -15.20816 -14.75272 -14.59950 -14.20708 -13.91131 -13.49339 -13.26640 -13.07803 -12.96918 -12.90961 -12.88719 -12.64983 -12.39755 -12.06257 -11.95107 -11.75793 -11.25279 -11.11757 -10.90423 -10.75773 -10.28826 -9.90883 -9.70482 -8.81605 -8.40095 -6.20321 -0.18481 0.25142 1.28655 1.38079 1.44202 1.64012 1.79582 2.06041 2.24034 2.80196 2.92918 3.16755 3.40842 3.66068 3.92305 3.95213 3.98358 4.05197 4.21391 4.35881 4.42323 4.45945 4.48759 4.57831 4.66692 4.77080 4.86672 4.92242 4.99860 5.12861 5.22240 5.26448 5.32011 5.37268 5.45861 5.50617 5.86192 6.14452 6.46546 6.85962 7.00048 7.14307 8.66800 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022756 B = 0.003350 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.144797 B = 8357.240784 C = 8958.666142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.071 0.929 4 C -0.116 4.116 5 C 0.072 3.928 6 O -0.591 6.591 7 N -0.704 5.704 8 C 0.564 3.436 9 O -0.580 6.580 10 C -0.157 4.157 11 C -0.063 4.063 12 C -0.121 4.121 13 C -0.063 4.063 14 C -0.129 4.129 15 S -0.096 6.096 16 C -0.537 4.537 17 H 0.067 0.933 18 C 0.020 3.980 19 N -0.906 5.906 20 Si 0.991 3.009 21 H -0.260 1.260 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.046 4.046 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.034 0.966 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.398 0.602 33 H 0.415 0.585 34 H 0.174 0.826 35 H 0.176 0.824 36 H 0.135 0.865 37 H 0.274 0.726 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.084 -11.111 -22.746 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.090 0.910 4 C -0.154 4.154 5 C -0.006 4.006 6 O -0.399 6.399 7 N -0.358 5.358 8 C 0.352 3.648 9 O -0.461 6.461 10 C -0.162 4.162 11 C -0.081 4.081 12 C -0.140 4.140 13 C -0.084 4.084 14 C -0.240 4.240 15 S 0.139 5.861 16 C -0.685 4.685 17 H 0.085 0.915 18 C -0.185 4.185 19 N -0.542 5.542 20 Si 0.813 3.187 21 H -0.184 1.184 22 H -0.195 1.195 23 H -0.196 1.196 24 C -0.068 4.068 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.247 0.753 33 H 0.254 0.746 34 H 0.191 0.809 35 H 0.193 0.807 36 H 0.152 0.848 37 H 0.083 0.917 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.215 -9.720 -22.152 24.221 hybrid contribution -1.135 -0.121 0.536 1.261 sum 0.080 -9.841 -21.616 23.751 Atomic orbital electron populations 1.22142 0.94278 1.03179 1.02284 1.20956 0.94766 0.96962 0.83289 0.91037 1.21725 0.94432 1.02617 0.96635 1.22192 0.94916 0.95870 0.87617 1.86388 1.29231 1.78745 1.45568 1.45868 1.66840 1.14604 1.08463 1.18369 0.76710 0.85881 0.83836 1.90760 1.51967 1.17793 1.85594 1.19981 1.07052 0.96140 0.93040 1.21709 0.94697 0.91422 1.00284 1.21556 0.99578 1.01787 0.91057 1.22076 0.94842 0.91902 0.99604 1.22494 1.04528 0.98419 0.98566 1.83474 1.17661 1.71329 1.13662 1.23035 0.96896 1.36248 1.12285 0.91471 1.26009 1.03052 0.93558 0.95915 1.70099 1.36335 1.30341 1.17464 0.85109 0.76789 0.79159 0.77659 1.18447 1.19531 1.19571 1.21632 0.94197 0.99223 0.91728 0.89704 0.90723 0.94720 0.89161 0.88773 0.93915 0.92888 0.75266 0.74631 0.80902 0.80689 0.84758 0.91668 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.48 71.98 0.68 -2.06 16 2 C 0.14 2.51 2.57 44.99 0.12 2.62 16 3 H 0.07 1.58 7.58 -2.39 -0.02 1.56 16 4 C -0.12 -1.39 5.12 30.60 0.16 -1.23 16 5 C 0.07 0.92 6.93 71.98 0.50 1.42 16 6 O -0.59 -7.70 13.66 -148.98 -2.03 -9.74 16 7 N -0.70 -13.54 4.48 -445.40 -2.00 -15.53 16 8 C 0.56 17.22 7.74 86.79 0.67 17.89 16 9 O -0.58 -23.32 16.00 -3.88 -0.06 -23.38 16 10 C -0.16 -5.01 5.87 -20.11 -0.12 -5.13 16 11 C -0.06 -1.38 9.54 22.57 0.22 -1.17 16 12 C -0.12 -2.83 10.02 22.21 0.22 -2.61 16 13 C -0.06 -2.17 9.79 22.48 0.22 -1.95 16 14 C -0.13 -5.69 5.45 22.65 0.12 -5.56 16 15 S -0.10 -5.28 21.40 -56.49 -1.21 -6.49 16 16 C -0.54 -31.77 9.46 67.94 0.64 -31.13 16 17 H 0.07 3.92 7.79 -2.91 -0.02 3.90 16 18 C 0.02 1.15 5.49 84.84 0.47 1.62 16 19 N -0.91 -55.01 13.22 21.64 0.29 -54.73 16 20 Si 0.99 44.84 29.55 68.60 2.03 46.87 16 21 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 C -0.05 -1.95 9.34 22.70 0.21 -1.73 16 25 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.62 7.75 -2.39 -0.02 0.60 16 32 H 0.40 2.00 9.12 -74.06 -0.68 1.33 16 33 H 0.41 5.00 6.63 -92.71 -0.61 4.39 16 34 H 0.17 1.89 6.40 -2.91 -0.02 1.87 16 35 H 0.18 2.46 8.06 -2.91 -0.02 2.43 16 36 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.10 4.94 7.65 -2.91 -0.02 4.91 16 Total: -1.00 -80.19 342.66 0.92 -79.27 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -0.20 Total: 12.76 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 4.11 Total: -29.03 kcal Atomic # 7 Polarization: -68.55 SS G_CDS: -1.71 Total: -70.26 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -2.10 Total: -33.12 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: -5.28 SS G_CDS: -1.21 Total: -6.49 kcal Total: -80.19 0.92 -79.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305208409.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.815 kcal (2) G-P(sol) polarization free energy of solvation -80.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds