Wall clock time and date at job start Tue Mar 31 2020 07:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47344 * 2 1 4 4 C 1.53001 * 109.46959 * 119.99407 * 2 1 3 5 5 O 1.42906 * 109.47046 * 55.00260 * 4 2 1 6 6 N 1.46495 * 109.47440 * 239.99576 * 2 1 3 7 7 C 1.46503 * 119.99997 * 300.00128 * 6 2 1 8 8 C 1.34778 * 120.00163 * 119.99954 * 6 2 1 9 9 O 1.21556 * 119.99686 * 354.80367 * 8 6 2 10 10 C 1.47865 * 120.00346 * 174.80253 * 8 6 2 11 11 C 1.39672 * 120.09715 * 335.41314 * 10 8 6 12 12 C 1.38044 * 120.03620 * 179.97438 * 11 10 8 13 13 C 1.38177 * 120.24095 * 359.76709 * 12 11 10 14 14 C 1.39185 * 120.20462 * 0.51069 * 13 12 11 15 15 S 1.76193 * 120.02139 * 179.74092 * 14 13 12 16 16 C 1.76202 * 99.99880 * 265.74005 * 15 14 13 17 17 H 1.07992 * 120.00467 * 5.21498 * 16 15 14 18 18 C 1.38732 * 119.99646 * 185.21662 * 16 15 14 19 19 N 1.31623 * 120.00112 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99758 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46927 * 90.00251 * 20 18 16 22 22 H 1.48500 * 109.47341 * 210.00008 * 20 18 16 23 23 H 1.48500 * 109.47568 * 330.00624 * 20 18 16 24 24 C 1.38873 * 119.95586 * 359.46923 * 14 13 12 25 25 H 1.09000 * 109.46935 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47295 * 299.99866 * 1 2 3 27 27 H 1.08997 * 109.47153 * 60.00717 * 1 2 3 28 28 H 1.09003 * 109.47483 * 174.99922 * 4 2 1 29 29 H 1.08997 * 109.47467 * 295.00560 * 4 2 1 30 30 H 0.96698 * 114.00016 * 179.97438 * 5 4 2 31 31 H 1.08997 * 109.47251 * 275.80699 * 7 6 2 32 32 H 1.08995 * 109.47131 * 35.81421 * 7 6 2 33 33 H 1.09000 * 109.46903 * 155.81277 * 7 6 2 34 34 H 1.07997 * 119.98483 * 359.97438 * 11 10 8 35 35 H 1.07996 * 119.87612 * 180.02562 * 12 11 10 36 36 H 1.07999 * 119.89826 * 180.27830 * 13 12 11 37 37 H 0.97008 * 119.99822 * 179.97438 * 19 18 16 38 38 H 1.07993 * 120.12204 * 180.25089 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 1.4702 -2.0303 1.3096 6 7 2.0184 -0.6907 -1.1961 7 6 1.6645 -2.0933 -1.4278 8 6 2.7933 -0.0357 -2.0833 9 8 3.0092 1.1520 -1.9411 10 6 3.3807 -0.7619 -3.2295 11 6 3.5879 -2.1411 -3.1531 12 6 4.1359 -2.8179 -4.2242 13 6 4.4771 -2.1367 -5.3770 14 6 4.2803 -0.7615 -5.4619 15 16 4.7235 0.1034 -6.9316 16 6 6.3481 0.6305 -6.4983 17 1 6.7915 0.3052 -5.5689 18 6 7.0576 1.4634 -7.3513 19 7 6.5170 1.8602 -8.4838 20 14 8.7796 2.0228 -6.8916 21 1 9.7723 1.0513 -7.4170 22 1 9.0385 3.3618 -7.4792 23 1 8.8971 2.0998 -5.4133 24 6 3.7292 -0.0723 -4.3895 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 3.1263 -0.7994 1.2058 29 1 1.7515 -0.1582 2.1370 30 1 1.7505 -2.5463 2.0779 31 1 2.3569 -2.7371 -0.8855 32 1 0.6488 -2.2745 -1.0765 33 1 1.7246 -2.3117 -2.4940 34 1 3.3193 -2.6783 -2.2556 35 1 4.2946 -3.8844 -4.1625 36 1 4.9013 -2.6725 -6.2133 37 1 7.0131 2.4430 -9.0800 38 1 3.5716 0.9941 -4.4541 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305739308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:10 Heat of formation + Delta-G solvation = -43.582135 kcal Electronic energy + Delta-G solvation = -21162.590273 eV Core-core repulsion = 17904.008174 eV Total energy + Delta-G solvation = -3258.582099 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.41350 -38.21542 -37.30964 -35.42086 -32.50554 -32.47062 -30.60363 -29.99840 -27.24317 -26.50084 -25.54057 -23.79022 -22.30215 -21.10331 -19.45311 -18.19561 -17.67494 -16.83672 -16.54567 -16.04530 -15.63361 -14.99132 -14.82706 -14.48342 -14.33837 -14.08069 -13.63543 -13.28289 -13.10575 -12.94875 -12.88685 -12.60799 -12.34596 -11.98445 -11.62020 -11.36124 -11.14300 -11.11811 -11.06232 -10.97061 -10.63558 -10.37283 -9.90978 -9.69657 -9.13713 -8.91924 -8.75204 -8.50913 -7.97046 -6.68917 -6.26314 -4.00072 1.24451 1.70215 2.89684 3.02023 3.21669 3.24947 3.30284 3.50141 3.96083 4.08733 4.27225 4.49760 4.80214 4.81903 5.01014 5.04206 5.10153 5.21165 5.24678 5.28437 5.40108 5.47033 5.50294 5.54903 5.72332 5.80182 5.81478 5.91592 6.01938 6.07769 6.30191 6.48805 6.63927 6.69394 6.96607 7.23200 7.25247 7.40439 7.60279 8.26598 8.35511 9.19681 10.80410 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.024046 B = 0.003641 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.134390 B = 7687.932651 C = 8087.815751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.137 3.863 3 H 0.112 0.888 4 C 0.067 3.933 5 O -0.567 6.567 6 N -0.607 5.607 7 C 0.078 3.922 8 C 0.563 3.437 9 O -0.537 6.537 10 C -0.153 4.153 11 C -0.105 4.105 12 C -0.144 4.144 13 C -0.056 4.056 14 C -0.108 4.108 15 S -0.036 6.036 16 C -0.519 4.519 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.871 5.871 20 Si 0.920 3.080 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.271 1.271 24 C -0.020 4.020 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.376 0.624 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.269 0.731 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.261 -10.154 17.935 23.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.034 3.966 3 H 0.130 0.870 4 C -0.011 4.011 5 O -0.372 6.372 6 N -0.341 5.341 7 C -0.064 4.064 8 C 0.353 3.647 9 O -0.415 6.415 10 C -0.158 4.158 11 C -0.124 4.124 12 C -0.164 4.164 13 C -0.077 4.077 14 C -0.218 4.218 15 S 0.198 5.802 16 C -0.666 4.666 17 H 0.094 0.906 18 C -0.136 4.136 19 N -0.506 5.506 20 Si 0.746 3.254 21 H -0.202 1.202 22 H -0.206 1.206 23 H -0.195 1.195 24 C -0.042 4.042 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.223 0.777 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.156 0.844 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.079 0.921 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.991 -8.988 16.264 21.589 hybrid contribution 2.036 -0.082 2.018 2.867 sum -8.955 -9.069 18.281 22.286 Atomic orbital electron populations 1.22022 0.94331 1.02968 1.02144 1.21160 0.95126 0.97298 0.83042 0.87038 1.22574 0.97023 0.84135 0.97414 1.86514 1.72961 1.27286 1.50439 1.47695 1.50990 1.12942 1.22457 1.22298 1.01184 0.80993 1.01917 1.18590 0.77653 0.86458 0.81968 1.90758 1.60642 1.15039 1.75053 1.19792 1.06518 0.94184 0.95305 1.21918 0.97816 0.93163 0.99473 1.21095 1.01491 0.99771 0.94053 1.21955 0.94700 0.93914 0.97142 1.22813 1.00750 0.96637 1.01647 1.83566 1.20084 1.65606 1.10939 1.22845 0.98903 1.35405 1.09470 0.90624 1.24997 0.99103 0.94833 0.94622 1.69991 1.37630 1.33190 1.09822 0.86124 0.82189 0.78084 0.78958 1.20170 1.20648 1.19547 1.21896 0.91886 1.00183 0.90256 0.91281 0.91745 0.92235 0.93241 0.92586 0.77681 0.92134 0.91162 0.89833 0.84441 0.85909 0.85182 0.92087 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 8.96 37.16 0.33 -1.13 16 2 C 0.14 1.50 3.16 -67.93 -0.21 1.29 16 3 H 0.11 1.40 6.91 -51.93 -0.36 1.04 16 4 C 0.07 0.55 6.79 37.16 0.25 0.80 16 5 O -0.57 -4.02 10.52 -35.23 -0.37 -4.39 16 6 N -0.61 -7.84 2.76 -175.04 -0.48 -8.32 16 7 C 0.08 0.80 6.99 59.85 0.42 1.21 16 8 C 0.56 9.63 7.49 -12.32 -0.09 9.53 16 9 O -0.54 -11.02 15.94 5.32 0.08 -10.93 16 10 C -0.15 -2.70 5.49 -105.00 -0.58 -3.28 16 11 C -0.11 -1.52 7.53 -39.12 -0.29 -1.81 16 12 C -0.14 -2.13 10.02 -39.67 -0.40 -2.52 16 13 C -0.06 -1.03 9.79 -39.25 -0.38 -1.41 16 14 C -0.11 -2.35 5.45 -38.99 -0.21 -2.57 16 15 S -0.04 -0.95 21.41 -107.50 -2.30 -3.25 16 16 C -0.52 -14.91 9.46 30.91 0.29 -14.62 16 17 H 0.08 2.17 7.79 -52.49 -0.41 1.76 16 18 C 0.07 2.09 5.49 -17.46 -0.10 1.99 16 19 N -0.87 -25.75 13.22 55.49 0.73 -25.01 16 20 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.02 -0.43 9.34 -38.92 -0.36 -0.79 16 25 H 0.07 0.64 6.12 -51.93 -0.32 0.32 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.38 1.15 9.12 45.56 0.42 1.56 16 31 H 0.06 0.55 6.68 -51.93 -0.35 0.20 16 32 H 0.07 0.65 6.20 -51.93 -0.32 0.33 16 33 H 0.08 0.89 5.12 -51.93 -0.27 0.62 16 34 H 0.14 1.54 4.43 -52.49 -0.23 1.31 16 35 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.14 3.05 7.84 -52.49 -0.41 2.64 16 LS Contribution 327.89 15.07 4.94 4.94 Total: -1.00 -34.00 327.89 -7.67 -41.67 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -3.92 Total: 1.84 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -1.34 Total: -13.31 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.25 Total: -33.33 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.29 Total: -15.32 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -2.30 Total: -3.25 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.00 -7.67 -41.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305739308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.911 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds