Wall clock time and date at job start Tue Mar 31 2020 07:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47344 * 2 1 4 4 C 1.53001 * 109.46959 * 119.99407 * 2 1 3 5 5 O 1.42906 * 109.47046 * 55.00260 * 4 2 1 6 6 N 1.46495 * 109.47440 * 239.99576 * 2 1 3 7 7 C 1.46503 * 119.99997 * 300.00128 * 6 2 1 8 8 C 1.34778 * 120.00163 * 119.99954 * 6 2 1 9 9 O 1.21556 * 119.99686 * 354.80367 * 8 6 2 10 10 C 1.47865 * 120.00346 * 174.80253 * 8 6 2 11 11 C 1.39672 * 120.09715 * 335.41314 * 10 8 6 12 12 C 1.38044 * 120.03620 * 179.97438 * 11 10 8 13 13 C 1.38177 * 120.24095 * 359.76709 * 12 11 10 14 14 C 1.39185 * 120.20462 * 0.51069 * 13 12 11 15 15 S 1.76193 * 120.02139 * 179.74092 * 14 13 12 16 16 C 1.76202 * 99.99880 * 265.74005 * 15 14 13 17 17 H 1.07992 * 120.00467 * 5.21498 * 16 15 14 18 18 C 1.38732 * 119.99646 * 185.21662 * 16 15 14 19 19 N 1.31623 * 120.00112 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99758 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46927 * 90.00251 * 20 18 16 22 22 H 1.48500 * 109.47341 * 210.00008 * 20 18 16 23 23 H 1.48500 * 109.47568 * 330.00624 * 20 18 16 24 24 C 1.38873 * 119.95586 * 359.46923 * 14 13 12 25 25 H 1.09000 * 109.46935 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47295 * 299.99866 * 1 2 3 27 27 H 1.08997 * 109.47153 * 60.00717 * 1 2 3 28 28 H 1.09003 * 109.47483 * 174.99922 * 4 2 1 29 29 H 1.08997 * 109.47467 * 295.00560 * 4 2 1 30 30 H 0.96698 * 114.00016 * 179.97438 * 5 4 2 31 31 H 1.08997 * 109.47251 * 275.80699 * 7 6 2 32 32 H 1.08995 * 109.47131 * 35.81421 * 7 6 2 33 33 H 1.09000 * 109.46903 * 155.81277 * 7 6 2 34 34 H 1.07997 * 119.98483 * 359.97438 * 11 10 8 35 35 H 1.07996 * 119.87612 * 180.02562 * 12 11 10 36 36 H 1.07999 * 119.89826 * 180.27830 * 13 12 11 37 37 H 0.97008 * 119.99822 * 179.97438 * 19 18 16 38 38 H 1.07993 * 120.12204 * 180.25089 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 1.4702 -2.0303 1.3096 6 7 2.0184 -0.6907 -1.1961 7 6 1.6645 -2.0933 -1.4278 8 6 2.7933 -0.0357 -2.0833 9 8 3.0092 1.1520 -1.9411 10 6 3.3807 -0.7619 -3.2295 11 6 3.5879 -2.1411 -3.1531 12 6 4.1359 -2.8179 -4.2242 13 6 4.4771 -2.1367 -5.3770 14 6 4.2803 -0.7615 -5.4619 15 16 4.7235 0.1034 -6.9316 16 6 6.3481 0.6305 -6.4983 17 1 6.7915 0.3052 -5.5689 18 6 7.0576 1.4634 -7.3513 19 7 6.5170 1.8602 -8.4838 20 14 8.7796 2.0228 -6.8916 21 1 9.7723 1.0513 -7.4170 22 1 9.0385 3.3618 -7.4792 23 1 8.8971 2.0998 -5.4133 24 6 3.7292 -0.0723 -4.3895 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 3.1263 -0.7994 1.2058 29 1 1.7515 -0.1582 2.1370 30 1 1.7505 -2.5463 2.0779 31 1 2.3569 -2.7371 -0.8855 32 1 0.6488 -2.2745 -1.0765 33 1 1.7246 -2.3117 -2.4940 34 1 3.3193 -2.6783 -2.2556 35 1 4.2946 -3.8844 -4.1625 36 1 4.9013 -2.6725 -6.2133 37 1 7.0131 2.4430 -9.0800 38 1 3.5716 0.9941 -4.4541 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305739308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:10 Heat of formation + Delta-G solvation = -67.855550 kcal Electronic energy + Delta-G solvation = -21163.642847 eV Core-core repulsion = 17904.008174 eV Total energy + Delta-G solvation = -3259.634673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.63217 -39.41646 -38.31340 -36.33908 -34.66710 -33.52015 -32.01524 -31.21151 -28.17618 -27.74750 -27.24251 -25.02354 -23.72138 -22.21473 -20.56399 -19.88085 -18.78337 -18.13430 -17.62271 -17.17671 -16.94453 -16.73182 -16.35214 -15.69008 -15.55412 -15.03026 -14.97765 -14.59993 -14.54627 -14.10704 -13.84536 -13.67320 -13.43753 -13.27462 -13.12706 -12.97445 -12.69999 -12.52011 -12.40804 -12.25950 -11.90674 -11.72533 -11.26575 -11.12833 -10.88604 -10.61210 -10.03534 -9.67314 -9.65958 -8.81557 -8.40500 -6.20628 -0.15456 0.24018 1.28040 1.36212 1.44273 1.58900 1.76648 1.89190 2.23089 2.73593 2.92291 3.39131 3.40588 3.44362 3.86621 3.94729 3.99262 4.09140 4.28437 4.34158 4.41639 4.48022 4.56212 4.58196 4.68162 4.70543 4.81524 4.90530 4.98117 5.04648 5.21147 5.29922 5.32159 5.37072 5.49320 5.55899 5.87250 6.14428 6.26353 6.94502 6.99772 7.01940 8.66536 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.024046 B = 0.003641 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.134390 B = 7687.932651 C = 8087.815751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.125 3.875 3 H 0.087 0.913 4 C 0.079 3.921 5 O -0.573 6.573 6 N -0.594 5.594 7 C 0.071 3.929 8 C 0.556 3.444 9 O -0.587 6.587 10 C -0.157 4.157 11 C -0.079 4.079 12 C -0.122 4.122 13 C -0.063 4.063 14 C -0.130 4.130 15 S -0.093 6.093 16 C -0.538 4.538 17 H 0.065 0.935 18 C 0.021 3.979 19 N -0.905 5.905 20 Si 0.992 3.008 21 H -0.260 1.260 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.047 4.047 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.397 0.603 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.184 0.816 35 H 0.177 0.823 36 H 0.136 0.864 37 H 0.274 0.726 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.295 -13.324 20.945 26.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 H 0.105 0.895 4 C 0.001 3.999 5 O -0.381 6.381 6 N -0.326 5.326 7 C -0.070 4.070 8 C 0.346 3.654 9 O -0.469 6.469 10 C -0.161 4.161 11 C -0.097 4.097 12 C -0.141 4.141 13 C -0.084 4.084 14 C -0.241 4.241 15 S 0.142 5.858 16 C -0.685 4.685 17 H 0.083 0.917 18 C -0.184 4.184 19 N -0.542 5.542 20 Si 0.813 3.187 21 H -0.185 1.185 22 H -0.196 1.196 23 H -0.196 1.196 24 C -0.069 4.069 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.247 0.753 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.201 0.799 35 H 0.194 0.806 36 H 0.154 0.846 37 H 0.084 0.916 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.061 -12.216 19.307 25.383 hybrid contribution 1.877 0.766 1.240 2.377 sum -9.183 -11.450 20.547 25.251 Atomic orbital electron populations 1.21962 0.92930 1.03475 1.02251 1.21393 0.96199 0.96669 0.83537 0.89476 1.22329 0.96381 0.84924 0.96309 1.86442 1.72945 1.26738 1.51995 1.47793 1.48958 1.13986 1.21825 1.22532 1.02927 0.79312 1.02224 1.18616 0.78336 0.85970 0.82495 1.90732 1.62786 1.17073 1.76272 1.19907 1.06317 0.95754 0.94164 1.22446 0.94935 0.91439 1.00864 1.21598 0.98653 1.02030 0.91823 1.22082 0.94930 0.92247 0.99107 1.22479 1.03739 0.97961 0.99898 1.83418 1.19874 1.67222 1.15306 1.23066 1.00174 1.36052 1.09246 0.91687 1.25996 1.03494 0.94606 0.94354 1.70106 1.39457 1.33770 1.10842 0.85054 0.76915 0.78187 0.78503 1.18488 1.19559 1.19565 1.21573 0.94326 0.98868 0.92097 0.90390 0.89805 0.94077 0.93943 0.90378 0.75257 0.89589 0.89477 0.90044 0.79902 0.80559 0.84625 0.91647 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.96 71.98 0.64 -1.83 16 2 C 0.12 2.53 3.16 44.99 0.14 2.68 16 3 H 0.09 2.22 6.91 -2.39 -0.02 2.20 16 4 C 0.08 1.04 6.79 71.98 0.49 1.53 16 5 O -0.57 -5.47 10.52 -148.98 -1.57 -7.03 16 6 N -0.59 -14.24 2.76 -825.98 -2.28 -16.52 16 7 C 0.07 1.14 6.99 127.77 0.89 2.03 16 8 C 0.56 19.11 7.49 86.79 0.65 19.76 16 9 O -0.59 -25.42 15.94 -3.89 -0.06 -25.49 16 10 C -0.16 -5.47 5.49 -20.11 -0.11 -5.58 16 11 C -0.08 -1.98 7.53 22.57 0.17 -1.81 16 12 C -0.12 -3.08 10.02 22.21 0.22 -2.86 16 13 C -0.06 -2.24 9.79 22.48 0.22 -2.02 16 14 C -0.13 -5.90 5.45 22.65 0.12 -5.78 16 15 S -0.09 -5.18 21.41 -56.49 -1.21 -6.39 16 16 C -0.54 -32.41 9.46 67.94 0.64 -31.77 16 17 H 0.06 3.90 7.79 -2.91 -0.02 3.88 16 18 C 0.02 1.22 5.49 84.84 0.47 1.68 16 19 N -0.91 -55.39 13.22 21.64 0.29 -55.11 16 20 Si 0.99 45.58 29.55 68.60 2.03 47.61 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 24 C -0.05 -2.07 9.34 22.70 0.21 -1.86 16 25 H 0.08 1.17 6.12 -2.39 -0.01 1.16 16 26 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.40 0.48 9.12 -74.06 -0.68 -0.20 16 31 H 0.09 1.03 6.68 -2.39 -0.02 1.01 16 32 H 0.09 1.20 6.20 -2.39 -0.01 1.19 16 33 H 0.08 1.37 5.12 -2.39 -0.01 1.36 16 34 H 0.18 2.97 4.43 -2.91 -0.01 2.96 16 35 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.14 4.61 8.06 -2.91 -0.02 4.59 16 37 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 38 H 0.10 4.96 7.84 -2.91 -0.02 4.94 16 Total: -1.00 -80.76 327.89 2.38 -78.39 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.42 Total: 10.37 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 4.77 Total: -25.83 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -1.99 Total: -71.63 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -1.63 Total: -32.52 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 16 Polarization: -5.18 SS G_CDS: -1.21 Total: -6.39 kcal Total: -80.76 2.38 -78.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305739308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.530 kcal (2) G-P(sol) polarization free energy of solvation -80.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds