Wall clock time and date at job start Tue Mar 31 2020 06:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46894 * 2 1 4 4 C 1.53004 * 109.46926 * 239.99839 * 2 1 3 5 5 O 1.42904 * 109.47047 * 60.00283 * 4 2 1 6 6 N 1.46492 * 109.47405 * 119.99913 * 2 1 3 7 7 C 1.34784 * 120.00217 * 300.00443 * 6 2 1 8 8 O 1.21552 * 119.99611 * 359.97438 * 7 6 2 9 9 C 1.47865 * 120.00304 * 179.97438 * 7 6 2 10 10 C 1.39665 * 120.09843 * 359.97438 * 9 7 6 11 11 C 1.38047 * 120.03832 * 180.02562 * 10 9 7 12 12 C 1.38176 * 120.23812 * 359.67600 * 11 10 9 13 13 C 1.39179 * 120.20540 * 0.60009 * 12 11 10 14 14 S 1.76194 * 120.02163 * 179.69520 * 13 12 11 15 15 C 1.76196 * 100.00182 * 265.25136 * 14 13 12 16 16 H 1.08000 * 120.00393 * 5.12593 * 15 14 13 17 17 C 1.38736 * 120.00006 * 185.12109 * 15 14 13 18 18 N 1.31616 * 119.99932 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99686 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47076 * 59.99906 * 19 17 15 21 21 H 1.48496 * 109.46794 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46962 * 299.99839 * 19 17 15 23 23 C 1.38875 * 119.95687 * 359.42658 * 13 12 11 24 24 H 1.08997 * 109.47220 * 299.99546 * 1 2 3 25 25 H 1.09003 * 109.47505 * 60.00486 * 1 2 3 26 26 H 1.09002 * 109.47114 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47417 * 180.02562 * 3 2 1 28 28 H 1.09010 * 109.47265 * 299.99957 * 3 2 1 29 29 H 1.08998 * 109.47545 * 60.00085 * 3 2 1 30 30 H 1.09000 * 109.46627 * 179.97438 * 4 2 1 31 31 H 1.08994 * 109.47319 * 299.99574 * 4 2 1 32 32 H 0.96701 * 113.99957 * 179.97438 * 5 4 2 33 33 H 0.96996 * 120.00373 * 119.99578 * 6 2 1 34 34 H 1.08002 * 119.98607 * 0.02562 * 10 9 7 35 35 H 1.07993 * 119.87788 * 179.97438 * 11 10 9 36 36 H 1.08004 * 119.89897 * 180.29644 * 12 11 10 37 37 H 0.97004 * 119.99833 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.12505 * 180.25503 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 1.5636 -0.0476 -2.4161 6 7 2.0184 -0.6905 1.1961 7 6 1.6928 -0.2301 2.4203 8 8 0.9942 0.7584 2.5318 9 6 2.1852 -0.9275 3.6276 10 6 2.9875 -2.0637 3.5019 11 6 3.4462 -2.7141 4.6298 12 6 3.1201 -2.2414 5.8866 13 6 2.3165 -1.1133 6.0236 14 16 1.8971 -0.5194 7.6286 15 6 0.3400 -1.3132 7.8514 16 1 -0.0188 -2.0152 7.1132 17 6 -0.4251 -1.0367 8.9752 18 7 0.0125 -0.1817 9.8751 19 14 -2.0756 -1.8790 9.2117 20 1 -1.8776 -3.3497 9.2654 21 1 -2.6906 -1.4150 10.4812 22 1 -2.9709 -1.5412 8.0761 23 6 1.8501 -0.4528 4.8945 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8901 29 1 1.6766 1.9564 0.8900 30 1 3.1300 -0.7209 -1.2494 31 1 1.6767 -1.7489 -1.2492 32 1 1.8493 -0.4509 -3.2472 33 1 2.5760 -1.4792 1.1072 34 1 3.2493 -2.4339 2.5216 35 1 4.0660 -3.5927 4.5296 36 1 3.4859 -2.7517 6.7654 37 1 -0.5227 0.0119 10.6606 38 1 1.2298 0.4252 4.9977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305806017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:36 Heat of formation + Delta-G solvation = -66.643817 kcal Electronic energy + Delta-G solvation = -20913.652853 eV Core-core repulsion = 17654.070724 eV Total energy + Delta-G solvation = -3259.582128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.38277 -38.42614 -37.38524 -35.27684 -32.50785 -32.27832 -30.59194 -30.00743 -27.29751 -26.70211 -25.56807 -23.84014 -22.33606 -20.82432 -19.61530 -18.40028 -17.91001 -17.39505 -15.91597 -15.57275 -15.42935 -15.14616 -14.84786 -14.74694 -14.40206 -14.10017 -13.77833 -13.41521 -13.05599 -12.94459 -12.93812 -12.36012 -12.16107 -11.76957 -11.63436 -11.31340 -11.16868 -11.14765 -11.07262 -10.92576 -10.71259 -10.44819 -9.95728 -9.57869 -9.18341 -9.14938 -9.01915 -8.59666 -8.03661 -6.71395 -6.28316 -4.02474 1.15640 1.65707 2.87990 3.04140 3.21394 3.23892 3.26924 3.46034 4.04195 4.08629 4.25977 4.53638 4.59966 4.83249 4.88839 5.05864 5.08360 5.14666 5.22492 5.32565 5.47462 5.64884 5.75699 5.77110 5.80586 5.86496 5.86770 5.97561 6.22571 6.30616 6.32424 6.49389 6.58478 6.62591 6.92508 7.17335 7.18938 7.50723 7.57403 8.30599 8.32512 9.17358 10.78376 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021710 B = 0.003538 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.444393 B = 7911.714323 C = 8480.328713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.175 3.825 3 C -0.159 4.159 4 C 0.077 3.923 5 O -0.561 6.561 6 N -0.727 5.727 7 C 0.570 3.430 8 O -0.526 6.526 9 C -0.154 4.154 10 C -0.091 4.091 11 C -0.141 4.141 12 C -0.056 4.056 13 C -0.106 4.106 14 S -0.034 6.034 15 C -0.521 4.521 16 H 0.075 0.925 17 C 0.074 3.926 18 N -0.870 5.870 19 Si 0.921 3.079 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.018 4.018 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.382 0.618 33 H 0.396 0.604 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.270 0.730 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.981 -4.600 -20.961 22.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.090 3.910 3 C -0.217 4.217 4 C -0.001 4.001 5 O -0.366 6.366 6 N -0.381 5.381 7 C 0.358 3.642 8 O -0.402 6.402 9 C -0.159 4.159 10 C -0.110 4.110 11 C -0.161 4.161 12 C -0.077 4.077 13 C -0.217 4.217 14 S 0.200 5.800 15 C -0.668 4.668 16 H 0.093 0.907 17 C -0.135 4.135 18 N -0.505 5.505 19 Si 0.746 3.254 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.198 1.198 23 C -0.040 4.040 24 H 0.099 0.901 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.229 0.771 33 H 0.231 0.769 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.149 0.851 37 H 0.080 0.920 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.706 -2.658 -19.500 20.792 hybrid contribution -1.037 -2.250 -1.210 2.757 sum 5.670 -4.908 -20.710 22.026 Atomic orbital electron populations 1.22159 0.93507 1.02142 1.03942 1.20122 0.95225 0.92887 0.82796 1.22156 1.00474 0.95119 1.03942 1.22232 0.97423 0.94787 0.85682 1.86459 1.77370 1.57058 1.15701 1.45909 1.54772 1.32310 1.05145 1.18308 0.79487 0.83676 0.82685 1.90720 1.37214 1.25782 1.86526 1.19872 1.03973 0.98720 0.93349 1.21125 0.96940 0.94656 0.98287 1.21053 1.01925 1.00601 0.92506 1.21961 0.94575 0.93853 0.97279 1.22858 0.99464 0.97635 1.01742 1.83603 1.25851 1.64154 1.06388 1.22795 1.04313 1.29199 1.10507 0.90676 1.24998 0.98521 0.95048 0.94950 1.69974 1.38102 1.32225 1.10248 0.86181 0.81852 0.79561 0.77762 1.19817 1.20719 1.19775 1.21955 0.94374 0.97922 0.89755 0.90120 0.91171 0.93040 0.93052 0.91182 0.90123 0.93094 0.93086 0.77102 0.76877 0.86618 0.85887 0.85080 0.91985 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.26 37.16 0.31 -1.67 16 2 C 0.18 1.94 0.89 -131.82 -0.12 1.82 16 3 C -0.16 -1.92 8.25 37.16 0.31 -1.61 16 4 C 0.08 0.59 6.03 37.16 0.22 0.81 16 5 O -0.56 -4.27 12.31 -35.23 -0.43 -4.70 16 6 N -0.73 -8.39 5.06 -48.54 -0.25 -8.63 16 7 C 0.57 9.01 7.19 -12.32 -0.09 8.93 16 8 O -0.53 -10.01 12.55 5.32 0.07 -9.94 16 9 C -0.15 -2.56 5.87 -105.00 -0.62 -3.18 16 10 C -0.09 -1.22 9.54 -39.12 -0.37 -1.59 16 11 C -0.14 -1.99 10.02 -39.67 -0.40 -2.38 16 12 C -0.06 -0.99 9.79 -39.25 -0.38 -1.37 16 13 C -0.11 -2.26 5.45 -39.00 -0.21 -2.48 16 14 S -0.03 -0.89 21.40 -107.50 -2.30 -3.19 16 15 C -0.52 -14.73 9.46 30.92 0.29 -14.44 16 16 H 0.08 2.10 7.79 -52.49 -0.41 1.69 16 17 C 0.07 2.08 5.49 -17.46 -0.10 1.98 16 18 N -0.87 -25.52 13.22 55.49 0.73 -24.78 16 19 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.02 -0.37 9.34 -38.92 -0.36 -0.74 16 24 H 0.08 1.23 6.16 -51.93 -0.32 0.91 16 25 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.80 7.68 -51.92 -0.40 0.40 16 29 H 0.08 1.19 6.16 -51.93 -0.32 0.87 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.38 1.08 9.12 45.56 0.42 1.50 16 33 H 0.40 3.38 6.50 -40.82 -0.27 3.11 16 34 H 0.12 1.06 6.40 -52.49 -0.34 0.73 16 35 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.13 2.21 8.06 -52.48 -0.42 1.79 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.14 3.06 7.65 -52.49 -0.40 2.66 16 LS Contribution 333.15 15.07 5.02 5.02 Total: -1.00 -33.45 333.15 -7.81 -41.26 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.11 Total: 4.40 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -1.52 Total: -15.91 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.49 Total: -33.42 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.37 Total: -14.65 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.30 Total: -3.19 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.45 -7.81 -41.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305806017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.381 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds