Wall clock time and date at job start Tue Mar 31 2020 06:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46894 * 2 1 4 4 C 1.53004 * 109.46926 * 239.99839 * 2 1 3 5 5 O 1.42904 * 109.47047 * 60.00283 * 4 2 1 6 6 N 1.46492 * 109.47405 * 119.99913 * 2 1 3 7 7 C 1.34784 * 120.00217 * 300.00443 * 6 2 1 8 8 O 1.21552 * 119.99611 * 359.97438 * 7 6 2 9 9 C 1.47865 * 120.00304 * 179.97438 * 7 6 2 10 10 C 1.39665 * 120.09843 * 359.97438 * 9 7 6 11 11 C 1.38047 * 120.03832 * 180.02562 * 10 9 7 12 12 C 1.38176 * 120.23812 * 359.67600 * 11 10 9 13 13 C 1.39179 * 120.20540 * 0.60009 * 12 11 10 14 14 S 1.76194 * 120.02163 * 179.69520 * 13 12 11 15 15 C 1.76196 * 100.00182 * 265.25136 * 14 13 12 16 16 H 1.08000 * 120.00393 * 5.12593 * 15 14 13 17 17 C 1.38736 * 120.00006 * 185.12109 * 15 14 13 18 18 N 1.31616 * 119.99932 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99686 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47076 * 59.99906 * 19 17 15 21 21 H 1.48496 * 109.46794 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46962 * 299.99839 * 19 17 15 23 23 C 1.38875 * 119.95687 * 359.42658 * 13 12 11 24 24 H 1.08997 * 109.47220 * 299.99546 * 1 2 3 25 25 H 1.09003 * 109.47505 * 60.00486 * 1 2 3 26 26 H 1.09002 * 109.47114 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47417 * 180.02562 * 3 2 1 28 28 H 1.09010 * 109.47265 * 299.99957 * 3 2 1 29 29 H 1.08998 * 109.47545 * 60.00085 * 3 2 1 30 30 H 1.09000 * 109.46627 * 179.97438 * 4 2 1 31 31 H 1.08994 * 109.47319 * 299.99574 * 4 2 1 32 32 H 0.96701 * 113.99957 * 179.97438 * 5 4 2 33 33 H 0.96996 * 120.00373 * 119.99578 * 6 2 1 34 34 H 1.08002 * 119.98607 * 0.02562 * 10 9 7 35 35 H 1.07993 * 119.87788 * 179.97438 * 11 10 9 36 36 H 1.08004 * 119.89897 * 180.29644 * 12 11 10 37 37 H 0.97004 * 119.99833 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.12505 * 180.25503 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 1.5636 -0.0476 -2.4161 6 7 2.0184 -0.6905 1.1961 7 6 1.6928 -0.2301 2.4203 8 8 0.9942 0.7584 2.5318 9 6 2.1852 -0.9275 3.6276 10 6 2.9875 -2.0637 3.5019 11 6 3.4462 -2.7141 4.6298 12 6 3.1201 -2.2414 5.8866 13 6 2.3165 -1.1133 6.0236 14 16 1.8971 -0.5194 7.6286 15 6 0.3400 -1.3132 7.8514 16 1 -0.0188 -2.0152 7.1132 17 6 -0.4251 -1.0367 8.9752 18 7 0.0125 -0.1817 9.8751 19 14 -2.0756 -1.8790 9.2117 20 1 -1.8776 -3.3497 9.2654 21 1 -2.6906 -1.4150 10.4812 22 1 -2.9709 -1.5412 8.0761 23 6 1.8501 -0.4528 4.8945 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8901 29 1 1.6766 1.9564 0.8900 30 1 3.1300 -0.7209 -1.2494 31 1 1.6767 -1.7489 -1.2492 32 1 1.8493 -0.4509 -3.2472 33 1 2.5760 -1.4792 1.1072 34 1 3.2493 -2.4339 2.5216 35 1 4.0660 -3.5927 4.5296 36 1 3.4859 -2.7517 6.7654 37 1 -0.5227 0.0119 10.6606 38 1 1.2298 0.4252 4.9977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305806017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:36 Heat of formation + Delta-G solvation = -91.842525 kcal Electronic energy + Delta-G solvation = -20914.745551 eV Core-core repulsion = 17654.070724 eV Total energy + Delta-G solvation = -3260.674826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.54212 -39.57638 -38.32604 -36.16554 -34.66289 -33.44380 -31.93734 -31.22216 -28.27505 -27.75201 -27.40417 -25.08521 -23.68935 -21.97255 -20.68514 -20.02827 -19.05865 -18.46266 -17.21519 -16.94093 -16.70999 -16.53094 -16.19568 -15.81512 -15.61034 -15.33480 -14.97080 -14.75557 -14.60168 -13.99967 -13.77406 -13.71249 -13.30239 -13.18753 -13.04709 -12.96794 -12.79161 -12.60952 -12.39376 -12.26246 -11.78919 -11.75678 -11.23429 -10.94120 -10.89650 -10.68772 -10.26850 -9.90667 -9.69624 -8.81383 -8.39924 -6.20162 -0.16992 0.26332 1.28657 1.38108 1.44229 1.63967 1.80979 1.93351 2.24026 2.81417 2.93040 3.41120 3.43523 3.58297 3.86222 3.95105 4.02910 4.04200 4.08121 4.36679 4.48123 4.50463 4.62392 4.65702 4.74921 4.78569 4.90299 4.90961 4.93659 5.20350 5.31356 5.32346 5.33601 5.37523 5.49378 5.51829 5.87463 6.14554 6.50045 6.95216 7.00152 7.17999 8.66963 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021710 B = 0.003538 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.444393 B = 7911.714323 C = 8480.328713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.169 3.831 3 C -0.156 4.156 4 C 0.086 3.914 5 O -0.581 6.581 6 N -0.701 5.701 7 C 0.566 3.434 8 O -0.568 6.568 9 C -0.156 4.156 10 C -0.063 4.063 11 C -0.120 4.120 12 C -0.064 4.064 13 C -0.129 4.129 14 S -0.097 6.097 15 C -0.537 4.537 16 H 0.067 0.933 17 C 0.020 3.980 18 N -0.906 5.906 19 Si 0.991 3.009 20 H -0.259 1.259 21 H -0.271 1.271 22 H -0.271 1.271 23 C -0.046 4.046 24 H 0.042 0.958 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.404 0.596 33 H 0.416 0.584 34 H 0.176 0.824 35 H 0.177 0.823 36 H 0.134 0.866 37 H 0.274 0.726 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.262 -7.945 -24.343 26.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.084 3.916 3 C -0.214 4.214 4 C 0.008 3.992 5 O -0.389 6.389 6 N -0.356 5.356 7 C 0.355 3.645 8 O -0.448 6.448 9 C -0.161 4.161 10 C -0.081 4.081 11 C -0.140 4.140 12 C -0.085 4.085 13 C -0.240 4.240 14 S 0.138 5.862 15 C -0.685 4.685 16 H 0.085 0.915 17 C -0.185 4.185 18 N -0.543 5.543 19 Si 0.813 3.187 20 H -0.184 1.184 21 H -0.195 1.195 22 H -0.196 1.196 23 C -0.068 4.068 24 H 0.061 0.939 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.255 0.745 33 H 0.255 0.745 34 H 0.194 0.806 35 H 0.194 0.806 36 H 0.152 0.848 37 H 0.083 0.917 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.031 -6.040 -22.931 25.036 hybrid contribution -1.338 -1.206 -0.356 1.837 sum 6.693 -7.246 -23.288 25.290 Atomic orbital electron populations 1.22098 0.94916 1.02156 1.02295 1.20257 0.94273 0.92849 0.84259 1.22091 1.01111 0.95839 1.02332 1.22118 0.98568 0.94768 0.83776 1.86405 1.77844 1.57872 1.16804 1.45640 1.53791 1.32377 1.03823 1.18296 0.79237 0.83213 0.83773 1.90726 1.39165 1.27725 1.87185 1.19985 1.04354 0.99860 0.91947 1.21736 0.93479 0.91917 1.00986 1.21563 1.00691 1.01260 0.90442 1.22076 0.94019 0.92701 0.99701 1.22487 1.02679 1.00257 0.98602 1.83480 1.25641 1.65672 1.11443 1.23036 1.05357 1.29397 1.10665 0.91462 1.26011 1.02466 0.95649 0.94418 1.70101 1.39709 1.33609 1.10835 0.85109 0.76721 0.78954 0.77934 1.18387 1.19528 1.19614 1.21619 0.95727 0.97754 0.91683 0.93871 0.90699 0.92122 0.91834 0.90758 0.93755 0.90784 0.91002 0.74525 0.74510 0.80646 0.80601 0.84791 0.91676 0.88124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 8.26 71.98 0.59 -3.16 16 2 C 0.17 3.32 0.89 3.60 0.00 3.33 16 3 C -0.16 -3.61 8.25 71.98 0.59 -3.01 16 4 C 0.09 0.91 6.03 71.98 0.43 1.35 16 5 O -0.58 -6.66 12.31 -148.98 -1.83 -8.49 16 6 N -0.70 -13.97 5.06 -425.74 -2.15 -16.12 16 7 C 0.57 17.55 7.19 86.79 0.62 18.17 16 8 O -0.57 -22.81 12.55 -3.88 -0.05 -22.86 16 9 C -0.16 -5.02 5.87 -20.11 -0.12 -5.13 16 10 C -0.06 -1.37 9.54 22.57 0.22 -1.15 16 11 C -0.12 -2.80 10.02 22.21 0.22 -2.58 16 12 C -0.06 -2.20 9.79 22.48 0.22 -1.98 16 13 C -0.13 -5.72 5.45 22.65 0.12 -5.60 16 14 S -0.10 -5.37 21.40 -56.49 -1.21 -6.58 16 15 C -0.54 -31.90 9.46 67.94 0.64 -31.26 16 16 H 0.07 3.94 7.79 -2.91 -0.02 3.92 16 17 C 0.02 1.15 5.49 84.84 0.47 1.62 16 18 N -0.91 -55.26 13.22 21.64 0.29 -54.97 16 19 Si 0.99 45.03 29.55 68.60 2.03 47.06 16 20 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 C -0.05 -1.96 9.34 22.70 0.21 -1.75 16 24 H 0.04 1.36 6.16 -2.39 -0.01 1.35 16 25 H 0.07 1.69 7.68 -2.39 -0.02 1.67 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.07 1.63 7.68 -2.38 -0.02 1.61 16 29 H 0.04 1.36 6.16 -2.39 -0.01 1.34 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.40 0.61 9.12 -74.06 -0.68 -0.06 16 33 H 0.42 4.70 6.50 -92.71 -0.60 4.10 16 34 H 0.18 1.78 6.40 -2.91 -0.02 1.76 16 35 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.10 4.95 7.65 -2.91 -0.02 4.92 16 Total: -1.00 -81.45 333.15 1.12 -80.33 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -0.18 Total: 12.79 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: 4.23 Total: -31.16 kcal Atomic # 7 Polarization: -69.23 SS G_CDS: -1.87 Total: -71.10 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -1.88 Total: -31.35 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: -5.37 SS G_CDS: -1.21 Total: -6.58 kcal Total: -81.45 1.12 -80.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305806017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.508 kcal (2) G-P(sol) polarization free energy of solvation -81.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds