Wall clock time and date at job start Tue Mar 31 2020 07:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47205 * 329.15790 * 3 2 1 5 5 C 1.36904 * 119.99679 * 245.38381 * 4 3 2 6 6 H 1.08005 * 120.00066 * 174.99270 * 5 4 3 7 7 C 1.39011 * 120.00384 * 354.98815 * 5 4 3 8 8 N 1.31397 * 119.99503 * 5.06415 * 7 5 4 9 9 Si 1.86795 * 120.00125 * 185.05892 * 7 5 4 10 10 H 1.48507 * 109.46943 * 90.00400 * 9 7 5 11 11 H 1.48507 * 109.47217 * 209.99874 * 9 7 5 12 12 H 1.48493 * 109.47206 * 330.00280 * 9 7 5 13 13 C 1.34777 * 119.99948 * 65.38370 * 4 3 2 14 14 O 1.21653 * 119.99614 * 185.44065 * 13 4 3 15 15 C 1.47211 * 120.00203 * 5.43832 * 13 4 3 16 16 C 1.40797 * 119.82365 * 355.42135 * 15 13 4 17 17 C 1.35563 * 120.92409 * 180.25971 * 16 15 13 18 18 C 1.40884 * 120.22629 * 359.45366 * 17 16 15 19 19 C 1.40419 * 120.98919 * 180.25202 * 18 17 16 20 20 C 1.36208 * 119.73223 * 180.02562 * 19 18 17 21 21 C 1.39286 * 120.97484 * 0.03903 * 20 19 18 22 22 C 1.36193 * 120.90137 * 359.95776 * 21 20 19 23 23 C 1.40427 * 119.68214 * 0.02562 * 22 21 20 24 24 C 1.39366 * 119.82138 * 175.14143 * 15 13 4 25 25 O 1.35454 * 120.36366 * 0.03825 * 24 15 13 26 26 H 4.40649 * 5.51365 * 179.97438 * 4 1 2 27 27 H 1.08994 * 109.47554 * 209.15499 * 3 2 1 28 28 H 1.09007 * 109.47012 * 89.15211 * 3 2 1 29 29 H 0.96999 * 119.99310 * 179.97438 * 8 7 5 30 30 H 1.08007 * 119.53930 * 359.97438 * 16 15 13 31 31 H 1.07999 * 119.88773 * 179.73288 * 17 16 15 32 32 H 1.08005 * 120.13392 * 0.04755 * 19 18 17 33 33 H 1.08004 * 119.51477 * 180.02562 * 20 19 18 34 34 H 1.08000 * 119.54745 * 179.97438 * 21 20 19 35 35 H 1.08005 * 120.16041 * 180.02562 * 22 21 20 36 36 H 0.96699 * 113.99903 * 269.98236 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1851 0.7081 5 6 3.8286 -1.0448 1.8800 6 1 4.1188 -1.9192 2.4438 7 6 4.1597 0.2229 2.3444 8 7 3.7222 1.2888 1.7128 9 14 5.2264 0.4110 3.8663 10 1 6.6559 0.4556 3.4664 11 1 4.8694 1.6699 4.5685 12 1 5.0020 -0.7428 4.7737 13 6 2.9017 -2.4138 0.2059 14 8 3.2198 -3.4011 0.8415 15 6 2.2621 -2.5612 -1.1118 16 6 1.8080 -1.4207 -1.8012 17 6 1.2112 -1.5310 -3.0134 18 6 1.0459 -2.7966 -3.6100 19 6 0.4348 -2.9289 -4.8673 20 6 0.2877 -4.1651 -5.4201 21 6 0.7344 -5.3051 -4.7561 22 6 1.3317 -5.2146 -3.5355 23 6 1.5004 -3.9563 -2.9354 24 6 2.1146 -3.8284 -1.6727 25 8 2.5558 -4.9254 -1.0118 26 1 -1.0499 -0.0002 0.0003 27 1 3.0090 0.8982 0.5006 28 1 3.0093 -0.0144 -1.0276 29 1 3.9529 2.1734 2.0371 30 1 1.9327 -0.4445 -1.3561 31 1 0.8653 -0.6454 -3.5256 32 1 0.0831 -2.0541 -5.3940 33 1 -0.1825 -4.2628 -6.3875 34 1 0.6056 -6.2739 -5.2156 35 1 1.6740 -6.1064 -3.0314 36 1 3.4718 -5.1627 -1.2111 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000312157549.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:32 Heat of formation + Delta-G solvation = 109.061335 kcal Electronic energy + Delta-G solvation = -23162.438107 eV Core-core repulsion = 19775.031174 eV Total energy + Delta-G solvation = -3387.406933 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.56264 -38.89075 -37.20982 -35.94214 -35.08415 -32.96431 -31.60905 -31.36571 -29.97248 -28.41150 -26.98811 -25.12049 -23.35622 -22.69682 -21.51955 -19.88883 -18.44143 -17.92914 -17.61540 -16.83271 -16.21485 -15.59947 -15.43479 -14.77842 -14.62531 -14.19061 -14.10740 -14.01283 -13.70860 -13.30026 -13.03245 -12.93875 -12.52919 -12.02775 -11.76978 -11.41194 -11.27967 -10.96931 -10.84765 -10.80433 -10.52218 -10.34748 -9.68276 -9.62892 -9.53259 -9.39220 -9.28579 -8.56329 -8.24317 -8.08636 -7.44947 -6.04834 -4.13457 0.66147 1.15758 2.16223 2.94722 3.12627 3.13464 3.19877 3.45004 3.71612 3.94108 3.99282 4.36559 4.56300 4.75803 4.94602 4.96888 5.02407 5.14613 5.28577 5.34079 5.49540 5.53790 5.60787 5.85769 5.91612 6.14946 6.22971 6.37488 6.40338 6.46807 6.57778 6.77695 6.80052 6.86950 6.99592 7.06632 7.18263 7.66279 7.90965 8.13348 8.40181 8.68571 9.02662 9.30489 9.78349 10.37570 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.026295 B = 0.004762 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.597615 B = 5878.989448 C = 6646.462107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.145 4.145 3 C 0.060 3.940 4 N -0.432 5.432 5 C -0.260 4.260 6 H 0.112 0.888 7 C 0.010 3.990 8 N -0.881 5.881 9 Si 0.960 3.040 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.268 1.268 13 C 0.488 3.512 14 O -0.569 6.569 15 C -0.128 4.128 16 C -0.140 4.140 17 C -0.138 4.138 18 C -0.030 4.030 19 C -0.113 4.113 20 C -0.117 4.117 21 C -0.135 4.135 22 C -0.088 4.088 23 C -0.087 4.087 24 C 0.159 3.841 25 O -0.468 6.468 26 H 0.205 0.795 27 H 0.257 0.743 28 H 0.075 0.925 29 H 0.279 0.721 30 H 0.211 0.789 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.338 -2.635 -11.374 12.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.146 4.146 3 C -0.060 4.060 4 N -0.148 5.148 5 C -0.387 4.387 6 H 0.130 0.870 7 C -0.185 4.185 8 N -0.526 5.526 9 Si 0.786 3.214 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.193 1.193 13 C 0.278 3.722 14 O -0.453 6.453 15 C -0.132 4.132 16 C -0.157 4.157 17 C -0.156 4.156 18 C -0.031 4.031 19 C -0.131 4.131 20 C -0.135 4.135 21 C -0.153 4.153 22 C -0.106 4.106 23 C -0.087 4.087 24 C 0.111 3.889 25 O -0.278 6.278 26 H 0.222 0.778 27 H 0.264 0.736 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.226 0.774 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -3.610 -2.937 -10.650 11.623 hybrid contribution 0.202 -0.103 0.022 0.228 sum -3.408 -3.040 -10.629 11.568 Atomic orbital electron populations 1.24622 0.95734 1.03513 1.04228 1.23823 0.95289 0.98240 0.97237 1.23012 0.82215 1.01711 0.99071 1.43632 1.46549 1.03526 1.21141 1.20118 1.26037 0.94607 0.97980 0.86986 1.25348 0.98409 0.93923 1.00778 1.66349 1.47301 0.99397 1.39562 0.85334 0.78937 0.78100 0.79005 1.20001 1.20475 1.19254 1.17839 0.84177 0.84124 0.86051 1.90646 1.56221 1.37230 1.61166 1.20634 1.02525 0.92803 0.97266 1.24179 0.93821 1.03386 0.94264 1.20906 1.02321 0.95738 0.96653 1.18110 0.97682 0.92927 0.94344 1.20992 0.99740 0.97762 0.94644 1.20802 1.00210 0.92701 0.99836 1.20742 1.00526 0.98430 0.95638 1.20955 0.98143 0.96472 0.95065 1.18309 1.02484 0.93875 0.94082 1.18507 0.95844 0.85715 0.88842 1.84674 1.32717 1.42797 1.67640 0.77802 0.73632 0.90835 0.90545 0.77357 0.85768 0.85744 0.86375 0.86317 0.85439 0.75582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.14 18.82 29.55 0.56 -4.59 16 2 C -0.14 -3.15 9.64 -37.12 -0.36 -3.51 16 3 C 0.06 1.38 5.28 -6.83 -0.04 1.35 16 4 N -0.43 -11.17 2.73 -159.36 -0.44 -11.60 16 5 C -0.26 -6.93 9.56 -15.00 -0.14 -7.07 16 6 H 0.11 3.10 7.17 -52.48 -0.38 2.73 16 7 C 0.01 0.24 5.45 -17.45 -0.10 0.14 16 8 N -0.88 -21.04 9.39 55.50 0.52 -20.52 16 9 Si 0.96 19.44 29.56 -169.99 -5.02 14.41 16 10 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 11 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 13 C 0.49 12.66 7.31 -12.62 -0.09 12.57 16 14 O -0.57 -16.10 14.71 -16.85 -0.25 -16.35 16 15 C -0.13 -2.85 5.78 -104.87 -0.61 -3.46 16 16 C -0.14 -2.76 6.21 -39.57 -0.25 -3.01 16 17 C -0.14 -2.32 9.72 -39.54 -0.38 -2.70 16 18 C -0.03 -0.49 5.75 -106.77 -0.61 -1.11 16 19 C -0.11 -1.50 9.75 -39.49 -0.39 -1.89 16 20 C -0.12 -1.40 9.95 -39.92 -0.40 -1.80 16 21 C -0.14 -1.68 9.95 -39.93 -0.40 -2.08 16 22 C -0.09 -1.30 9.56 -39.49 -0.38 -1.67 16 23 C -0.09 -1.52 5.75 -106.73 -0.61 -2.14 16 24 C 0.16 3.20 6.73 -38.12 -0.26 2.95 16 25 O -0.47 -9.19 10.74 -40.14 -0.43 -9.62 16 26 H 0.20 3.20 7.80 -54.10 -0.42 2.77 16 27 H 0.26 6.05 3.13 -115.39 -0.36 5.69 16 28 H 0.07 1.55 5.57 -51.93 -0.29 1.26 16 29 H 0.28 6.15 8.31 -40.82 -0.34 5.81 16 30 H 0.21 4.16 1.50 -146.57 -0.22 3.94 16 31 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 32 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 33 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.13 1.70 7.61 -52.48 -0.40 1.30 16 36 H 0.39 5.98 9.06 45.56 0.41 6.40 16 LS Contribution 306.04 15.07 4.61 4.61 Total: -1.00 -30.97 306.04 -7.93 -38.90 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -2.48 Total: 18.18 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -4.44 Total: -18.01 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.09 Total: -32.13 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.68 Total: -25.97 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.97 -7.93 -38.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312157549.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.963 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds