Wall clock time and date at job start Tue Mar 31 2020 07:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47205 * 329.15790 * 3 2 1 5 5 C 1.36904 * 119.99679 * 245.38381 * 4 3 2 6 6 H 1.08005 * 120.00066 * 174.99270 * 5 4 3 7 7 C 1.39011 * 120.00384 * 354.98815 * 5 4 3 8 8 N 1.31397 * 119.99503 * 5.06415 * 7 5 4 9 9 Si 1.86795 * 120.00125 * 185.05892 * 7 5 4 10 10 H 1.48507 * 109.46943 * 90.00400 * 9 7 5 11 11 H 1.48507 * 109.47217 * 209.99874 * 9 7 5 12 12 H 1.48493 * 109.47206 * 330.00280 * 9 7 5 13 13 C 1.34777 * 119.99948 * 65.38370 * 4 3 2 14 14 O 1.21653 * 119.99614 * 185.44065 * 13 4 3 15 15 C 1.47211 * 120.00203 * 5.43832 * 13 4 3 16 16 C 1.40797 * 119.82365 * 355.42135 * 15 13 4 17 17 C 1.35563 * 120.92409 * 180.25971 * 16 15 13 18 18 C 1.40884 * 120.22629 * 359.45366 * 17 16 15 19 19 C 1.40419 * 120.98919 * 180.25202 * 18 17 16 20 20 C 1.36208 * 119.73223 * 180.02562 * 19 18 17 21 21 C 1.39286 * 120.97484 * 0.03903 * 20 19 18 22 22 C 1.36193 * 120.90137 * 359.95776 * 21 20 19 23 23 C 1.40427 * 119.68214 * 0.02562 * 22 21 20 24 24 C 1.39366 * 119.82138 * 175.14143 * 15 13 4 25 25 O 1.35454 * 120.36366 * 0.03825 * 24 15 13 26 26 H 4.40649 * 5.51365 * 179.97438 * 4 1 2 27 27 H 1.08994 * 109.47554 * 209.15499 * 3 2 1 28 28 H 1.09007 * 109.47012 * 89.15211 * 3 2 1 29 29 H 0.96999 * 119.99310 * 179.97438 * 8 7 5 30 30 H 1.08007 * 119.53930 * 359.97438 * 16 15 13 31 31 H 1.07999 * 119.88773 * 179.73288 * 17 16 15 32 32 H 1.08005 * 120.13392 * 0.04755 * 19 18 17 33 33 H 1.08004 * 119.51477 * 180.02562 * 20 19 18 34 34 H 1.08000 * 119.54745 * 179.97438 * 21 20 19 35 35 H 1.08005 * 120.16041 * 180.02562 * 22 21 20 36 36 H 0.96699 * 113.99903 * 269.98236 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1851 0.7081 5 6 3.8286 -1.0448 1.8800 6 1 4.1188 -1.9192 2.4438 7 6 4.1597 0.2229 2.3444 8 7 3.7222 1.2888 1.7128 9 14 5.2264 0.4110 3.8663 10 1 6.6559 0.4556 3.4664 11 1 4.8694 1.6699 4.5685 12 1 5.0020 -0.7428 4.7737 13 6 2.9017 -2.4138 0.2059 14 8 3.2198 -3.4011 0.8415 15 6 2.2621 -2.5612 -1.1118 16 6 1.8080 -1.4207 -1.8012 17 6 1.2112 -1.5310 -3.0134 18 6 1.0459 -2.7966 -3.6100 19 6 0.4348 -2.9289 -4.8673 20 6 0.2877 -4.1651 -5.4201 21 6 0.7344 -5.3051 -4.7561 22 6 1.3317 -5.2146 -3.5355 23 6 1.5004 -3.9563 -2.9354 24 6 2.1146 -3.8284 -1.6727 25 8 2.5558 -4.9254 -1.0118 26 1 -1.0499 -0.0002 0.0003 27 1 3.0090 0.8982 0.5006 28 1 3.0093 -0.0144 -1.0276 29 1 3.9529 2.1734 2.0371 30 1 1.9327 -0.4445 -1.3561 31 1 0.8653 -0.6454 -3.5256 32 1 0.0831 -2.0541 -5.3940 33 1 -0.1825 -4.2628 -6.3875 34 1 0.6056 -6.2739 -5.2156 35 1 1.6740 -6.1064 -3.0314 36 1 3.4718 -5.1627 -1.2111 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000312157549.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:31 Heat of formation + Delta-G solvation = 90.369123 kcal Electronic energy + Delta-G solvation = -23163.248662 eV Core-core repulsion = 19775.031174 eV Total energy + Delta-G solvation = -3388.217488 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.00804 -40.44347 -38.67053 -37.59717 -36.70980 -34.60916 -33.25466 -32.75158 -31.33426 -29.74113 -28.69933 -26.87937 -24.79318 -23.98228 -22.76799 -21.56214 -20.00607 -19.57693 -19.09019 -18.40123 -17.54594 -17.16691 -17.03451 -16.31046 -16.08539 -15.76209 -15.69178 -15.62571 -14.96978 -14.65091 -14.55001 -14.30292 -14.14059 -13.45570 -13.28412 -12.96891 -12.78493 -12.62388 -12.19635 -12.12071 -11.97565 -11.90408 -11.46269 -11.29907 -11.08017 -10.87173 -10.70522 -10.45248 -10.00137 -9.55830 -8.72233 -7.87708 -6.11679 -0.62305 -0.09397 0.91929 1.39857 1.43872 1.57619 1.69309 1.82342 2.08928 2.24753 2.40739 2.98654 3.05258 3.12128 3.27570 3.68622 3.77428 3.89255 3.98179 4.08635 4.24377 4.39345 4.45206 4.57549 4.64314 4.73892 4.93933 5.07651 5.15153 5.18064 5.23412 5.26046 5.40189 5.56141 5.61011 5.67748 5.79083 6.03991 6.05991 6.72250 6.76284 6.83649 7.11516 7.40499 7.88345 8.50140 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.026295 B = 0.004762 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.597615 B = 5878.989448 C = 6646.462107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.187 4.187 3 C 0.060 3.940 4 N -0.441 5.441 5 C -0.315 4.315 6 H 0.084 0.916 7 C -0.009 4.009 8 N -0.883 5.883 9 Si 1.022 2.978 10 H -0.264 1.264 11 H -0.260 1.260 12 H -0.278 1.278 13 C 0.469 3.531 14 O -0.616 6.616 15 C -0.165 4.165 16 C -0.160 4.160 17 C -0.124 4.124 18 C -0.042 4.042 19 C -0.115 4.115 20 C -0.104 4.104 21 C -0.118 4.118 22 C -0.110 4.110 23 C -0.103 4.103 24 C 0.148 3.852 25 O -0.485 6.485 26 H 0.244 0.756 27 H 0.248 0.752 28 H 0.085 0.915 29 H 0.289 0.711 30 H 0.204 0.796 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.155 0.845 35 H 0.131 0.869 36 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.255 -2.060 -14.437 15.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.189 4.189 3 C -0.060 4.060 4 N -0.156 5.156 5 C -0.442 4.442 6 H 0.102 0.898 7 C -0.203 4.203 8 N -0.526 5.526 9 Si 0.844 3.156 10 H -0.189 1.189 11 H -0.185 1.185 12 H -0.203 1.203 13 C 0.261 3.739 14 O -0.505 6.505 15 C -0.169 4.169 16 C -0.176 4.176 17 C -0.142 4.142 18 C -0.043 4.043 19 C -0.133 4.133 20 C -0.122 4.122 21 C -0.136 4.136 22 C -0.128 4.128 23 C -0.104 4.104 24 C 0.101 3.899 25 O -0.297 6.297 26 H 0.260 0.740 27 H 0.255 0.745 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.219 0.781 31 H 0.176 0.824 32 H 0.175 0.825 33 H 0.179 0.821 34 H 0.172 0.828 35 H 0.149 0.851 36 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -5.542 -2.309 -13.756 15.009 hybrid contribution 0.676 -0.358 0.751 1.072 sum -4.866 -2.667 -13.005 14.140 Atomic orbital electron populations 1.25477 0.96527 1.01178 1.02116 1.23775 0.95580 1.00296 0.99216 1.22933 0.83573 1.00128 0.99319 1.43833 1.46368 1.04411 1.21015 1.20064 1.29628 0.94842 0.99674 0.89839 1.26203 0.98239 0.92925 1.02982 1.66547 1.46329 0.99849 1.39919 0.84485 0.77603 0.78147 0.75394 1.18857 1.18454 1.20337 1.18571 0.84152 0.83723 0.87463 1.90563 1.58532 1.38475 1.62882 1.20515 1.05231 0.94861 0.96269 1.23940 0.95953 1.02067 0.95642 1.21246 1.00260 0.97354 0.95301 1.18445 0.97875 0.92186 0.95777 1.21371 0.98845 0.99891 0.93174 1.21354 0.98174 0.91663 1.00998 1.21239 0.97647 1.00572 0.94129 1.21114 0.99660 0.95521 0.96482 1.18495 1.02822 0.95869 0.93172 1.18820 0.96108 0.85006 0.89967 1.84601 1.33733 1.42848 1.68469 0.73979 0.74475 0.89814 0.89479 0.78056 0.82431 0.82468 0.82099 0.82775 0.85068 0.74266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -9.00 18.82 74.32 1.40 -7.60 16 2 C -0.19 -8.35 9.64 31.13 0.30 -8.05 16 3 C 0.06 2.90 5.28 84.57 0.45 3.35 16 4 N -0.44 -24.46 2.73 -776.32 -2.12 -26.58 16 5 C -0.31 -18.02 9.56 84.09 0.80 -17.22 16 6 H 0.08 5.10 7.17 -2.91 -0.02 5.08 16 7 C -0.01 -0.47 5.45 84.94 0.46 -0.01 16 8 N -0.88 -42.94 9.39 21.68 0.20 -42.73 16 9 Si 1.02 40.49 29.56 68.60 2.03 42.51 16 10 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 11 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 12 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 13 C 0.47 26.40 7.31 86.60 0.63 27.03 16 14 O -0.62 -38.23 14.71 16.92 0.25 -37.98 16 15 C -0.17 -7.79 5.78 -20.02 -0.12 -7.91 16 16 C -0.16 -6.43 6.21 22.28 0.14 -6.29 16 17 C -0.12 -3.97 9.72 22.30 0.22 -3.76 16 18 C -0.04 -1.29 5.75 -21.26 -0.12 -1.42 16 19 C -0.12 -2.49 9.75 22.33 0.22 -2.28 16 20 C -0.10 -1.87 9.95 22.05 0.22 -1.65 16 21 C -0.12 -2.39 9.95 22.05 0.22 -2.17 16 22 C -0.11 -3.03 9.56 22.33 0.21 -2.81 16 23 C -0.10 -3.56 5.75 -21.23 -0.12 -3.68 16 24 C 0.15 6.30 6.73 23.22 0.16 6.45 16 25 O -0.48 -20.45 10.74 -66.40 -0.71 -21.16 16 26 H 0.24 6.91 7.80 -4.42 -0.03 6.87 16 27 H 0.25 12.14 3.13 -127.69 -0.40 11.74 16 28 H 0.08 3.74 5.57 -2.38 -0.01 3.73 16 29 H 0.29 12.67 8.31 -92.71 -0.77 11.90 16 30 H 0.20 8.30 1.50 -91.28 -0.14 8.16 16 31 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 32 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.13 3.41 7.61 -2.91 -0.02 3.39 16 36 H 0.40 13.67 9.06 -74.06 -0.67 13.00 16 Total: -1.00 -73.72 306.04 4.67 -69.05 By element: Atomic # 1 Polarization: 44.93 SS G_CDS: -0.04 Total: 44.89 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: 5.07 Total: -28.00 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -1.92 Total: -69.31 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: -0.46 Total: -59.14 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.51 kcal Total: -73.72 4.67 -69.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312157549.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.417 kcal (2) G-P(sol) polarization free energy of solvation -73.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds