Wall clock time and date at job start Tue Mar 31 2020 07:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.41653 * 2 1 4 4 C 1.54063 * 110.46803 * 237.36695 * 2 1 3 5 5 N 1.47064 * 110.10920 * 196.09146 * 4 2 1 6 6 C 1.46503 * 126.30492 * 208.99380 * 5 4 2 7 7 C 1.50703 * 109.46859 * 275.02114 * 6 5 4 8 8 C 1.38629 * 119.74957 * 269.72200 * 7 6 5 9 9 C 1.37621 * 120.24924 * 179.72340 * 8 7 6 10 10 C 1.40711 * 119.74307 * 0.57313 * 9 8 7 11 11 C 1.41393 * 120.24472 * 179.68114 * 10 9 8 12 12 H 1.08001 * 120.00130 * 155.31513 * 11 10 9 13 13 C 1.39942 * 119.99962 * 335.31020 * 11 10 9 14 14 N 1.30829 * 120.00129 * 342.23101 * 13 11 10 15 15 Si 1.86805 * 120.00020 * 162.23404 * 13 11 10 16 16 H 1.48498 * 109.47224 * 94.66776 * 15 13 11 17 17 H 1.48503 * 109.46885 * 214.66415 * 15 13 11 18 18 H 1.48493 * 109.46716 * 334.66270 * 15 13 11 19 19 C 1.40723 * 119.51215 * 359.70418 * 10 9 8 20 20 C 1.37620 * 119.74287 * 359.97438 * 19 10 9 21 21 S 1.67001 * 107.39541 * 29.03199 * 5 4 2 22 22 O 1.42098 * 105.13430 * 241.06965 * 21 5 4 23 23 O 1.42106 * 105.27152 * 111.43674 * 21 5 4 24 24 C 1.55602 * 110.46818 * 122.49385 * 2 1 3 25 25 H 1.09005 * 109.46909 * 298.95963 * 1 2 3 26 26 H 1.09001 * 109.47122 * 178.96163 * 1 2 3 27 27 H 1.08995 * 109.47303 * 58.96160 * 1 2 3 28 28 H 1.09002 * 109.35898 * 316.27247 * 4 2 1 29 29 H 1.09003 * 109.35603 * 75.91645 * 4 2 1 30 30 H 1.08997 * 109.46585 * 35.01658 * 6 5 4 31 31 H 1.08997 * 109.46795 * 155.01873 * 6 5 4 32 32 H 1.08004 * 119.87511 * 359.97438 * 8 7 6 33 33 H 1.08000 * 120.12667 * 180.27585 * 9 8 7 34 34 H 0.97001 * 119.99924 * 179.97438 * 14 13 11 35 35 H 1.07997 * 120.12741 * 180.02562 * 19 10 9 36 36 H 1.07995 * 119.87351 * 179.97438 * 20 19 10 37 37 H 1.09002 * 111.16648 * 274.48244 * 24 2 1 38 38 H 1.09003 * 111.16942 * 38.71081 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0687 -0.7783 -1.2155 5 7 3.4886 -1.1059 -1.0173 6 6 4.4942 -1.2776 -2.0688 7 6 4.4442 -2.6923 -2.5855 8 6 5.2345 -3.6678 -1.9976 9 6 5.1927 -4.9642 -2.4576 10 6 4.3526 -5.2953 -3.5367 11 6 4.3064 -6.6224 -4.0222 12 1 3.4286 -6.9771 -4.5420 13 6 5.3981 -7.4765 -3.8292 14 7 6.5704 -6.9813 -3.5257 15 14 5.1815 -9.3236 -4.0051 16 1 5.5466 -9.7357 -5.3843 17 1 6.0603 -10.0199 -3.0314 18 1 3.7655 -9.6833 -3.7394 19 6 3.5591 -4.2957 -4.1295 20 6 3.6121 -3.0073 -3.6487 21 16 3.7436 -1.2473 0.6271 22 8 4.7014 -0.2459 0.9415 23 8 4.0056 -2.6264 0.8480 24 6 2.0741 -0.7831 1.2296 25 1 -0.3633 0.4976 0.8992 26 1 -0.3633 -1.0275 -0.0186 27 1 -0.3634 0.5298 -0.8805 28 1 1.4988 -1.6997 -1.3361 29 1 1.9606 -0.1680 -2.1122 30 1 4.2882 -0.5851 -2.8849 31 1 5.4845 -1.0744 -1.6611 32 1 5.8825 -3.4102 -1.1728 33 1 5.8060 -5.7235 -1.9951 34 1 7.3270 -7.5733 -3.3915 35 1 2.9104 -4.5388 -4.9580 36 1 3.0044 -2.2384 -4.1023 37 1 2.1373 -0.1414 2.1084 38 1 1.4687 -1.6664 1.4331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335300085.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:32 Heat of formation + Delta-G solvation = -73.577817 kcal Electronic energy + Delta-G solvation = -21740.872629 eV Core-core repulsion = 18480.989819 eV Total energy + Delta-G solvation = -3259.882809 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.64563 -38.48559 -38.01235 -36.88818 -35.99222 -34.64400 -31.89244 -31.12041 -29.01629 -28.48162 -26.46837 -24.71925 -22.92397 -21.89315 -21.70619 -19.84208 -19.21497 -18.25603 -17.65351 -17.15047 -16.81487 -16.23579 -15.79916 -15.72353 -15.59900 -15.32529 -14.69183 -14.25846 -13.96235 -13.81884 -13.80561 -13.48874 -13.27032 -13.26757 -13.10771 -12.98517 -12.88609 -12.71661 -12.46185 -12.25342 -12.07849 -11.94358 -11.79934 -11.54292 -11.34335 -11.25427 -10.99283 -9.82284 -9.33753 -9.21579 -8.64111 -6.33803 -0.71694 0.90983 1.18044 1.35773 1.43904 1.51874 1.74931 2.19554 2.70455 2.76612 3.01571 3.39385 3.59511 3.77025 3.99190 4.02741 4.33140 4.39523 4.46652 4.53532 4.59328 4.61874 4.74036 4.80807 4.88578 5.06122 5.07826 5.09651 5.16941 5.20161 5.39390 5.44422 5.47583 5.71605 5.77728 5.97832 6.11504 6.26218 6.39279 6.72094 6.93861 7.05447 8.32909 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.025144 B = 0.004075 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.310256 B = 6868.748464 C = 7133.101434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 H 0.118 0.882 4 C 0.074 3.926 5 N -0.984 5.984 6 C 0.220 3.780 7 C -0.228 4.228 8 C -0.088 4.088 9 C -0.196 4.196 10 C 0.082 3.918 11 C -0.501 4.501 12 H 0.078 0.922 13 C 0.032 3.968 14 N -0.828 5.828 15 Si 0.983 3.017 16 H -0.259 1.259 17 H -0.269 1.269 18 H -0.257 1.257 19 C -0.244 4.244 20 C -0.065 4.065 21 S 2.538 3.462 22 O -1.004 7.004 23 O -1.006 7.006 24 C -0.559 4.559 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.287 0.713 35 H 0.102 0.898 36 H 0.130 0.870 37 H 0.170 0.830 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.475 14.043 6.288 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.110 4.110 3 H 0.136 0.864 4 C -0.051 4.051 5 N -0.825 5.825 6 C 0.097 3.903 7 C -0.231 4.231 8 C -0.107 4.107 9 C -0.216 4.216 10 C 0.080 3.920 11 C -0.531 4.531 12 H 0.097 0.903 13 C -0.183 4.183 14 N -0.454 5.454 15 Si 0.803 3.197 16 H -0.183 1.183 17 H -0.194 1.194 18 H -0.181 1.181 19 C -0.263 4.263 20 C -0.083 4.083 21 S 2.640 3.360 22 O -0.994 6.994 23 O -0.996 6.996 24 C -0.694 4.694 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.148 0.852 37 H 0.187 0.813 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.227 13.711 6.731 18.956 hybrid contribution 0.113 -1.179 -0.115 1.190 sum -11.114 12.532 6.616 18.009 Atomic orbital electron populations 1.21692 0.89912 1.03440 1.04151 1.22339 1.00331 0.99851 0.88439 0.86409 1.22394 0.80248 1.00916 1.01585 1.57199 1.15672 1.86949 1.22718 1.19634 0.88841 0.92304 0.89505 1.19853 1.04394 0.96479 1.02383 1.20685 0.98441 0.93936 0.97654 1.21196 1.04949 0.95769 0.99647 1.17979 0.90609 0.93615 0.89833 1.19875 1.02047 0.96835 1.34327 0.90344 1.26831 0.93603 1.06161 0.91670 1.69907 1.01032 1.39461 1.34988 0.85193 0.79627 0.75630 0.79242 1.18304 1.19366 1.18091 1.21211 1.07521 0.93887 1.03728 1.20678 0.96956 0.95417 0.95293 1.07057 0.79385 0.73948 0.75561 1.93523 1.60872 1.61034 1.83954 1.93598 1.85450 1.35575 1.84933 1.30804 1.17296 1.12389 1.08908 0.90048 0.91871 0.90158 0.91404 0.86985 0.87565 0.91854 0.90202 0.89194 0.90282 0.88020 0.85188 0.81266 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 9.27 71.98 0.67 -0.38 16 2 C -0.09 -1.09 3.42 -9.54 -0.03 -1.12 16 3 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 4 C 0.07 1.39 6.23 86.63 0.54 1.93 16 5 N -0.98 -27.96 3.30 -516.55 -1.71 -29.67 16 6 C 0.22 7.27 6.47 85.63 0.55 7.82 16 7 C -0.23 -9.83 5.48 -19.68 -0.11 -9.94 16 8 C -0.09 -4.55 9.67 22.22 0.21 -4.34 16 9 C -0.20 -11.33 8.70 22.73 0.20 -11.13 16 10 C 0.08 4.66 5.57 -21.29 -0.12 4.54 16 11 C -0.50 -28.24 9.05 23.46 0.21 -28.03 16 12 H 0.08 4.20 7.91 -2.91 -0.02 4.18 16 13 C 0.03 1.69 5.14 85.26 0.44 2.13 16 14 N -0.83 -46.09 10.97 21.83 0.24 -45.85 16 15 Si 0.98 39.98 29.60 68.60 2.03 42.01 16 16 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 17 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 18 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 19 C -0.24 -12.02 9.80 22.73 0.22 -11.80 16 20 C -0.06 -2.72 9.67 22.22 0.21 -2.51 16 21 S 2.54 75.03 6.17 -56.49 -0.35 74.69 16 22 O -1.00 -35.03 18.13 -127.76 -2.32 -37.35 16 23 O -1.01 -41.18 18.14 -127.76 -2.32 -43.50 16 24 C -0.56 -8.32 6.92 72.88 0.50 -7.81 16 25 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 26 H 0.06 0.56 8.13 -2.39 -0.02 0.54 16 27 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 1.38 8.06 -2.39 -0.02 1.36 16 29 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.11 2.74 8.08 -2.39 -0.02 2.72 16 31 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 32 H 0.08 4.09 8.06 -2.91 -0.02 4.07 16 33 H 0.09 5.54 6.18 -2.91 -0.02 5.52 16 34 H 0.29 14.45 8.30 -92.71 -0.77 13.68 16 35 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 36 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 37 H 0.17 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.16 1.98 8.08 -2.39 -0.02 1.96 16 Total: -1.00 -78.94 330.71 0.13 -78.81 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 1.05 Total: 21.51 kcal Atomic # 6 Polarization: -64.15 SS G_CDS: 3.51 Total: -60.64 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -1.47 Total: -75.52 kcal Atomic # 8 Polarization: -76.22 SS G_CDS: -4.63 Total: -80.85 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Atomic # 16 Polarization: 75.03 SS G_CDS: -0.35 Total: 74.69 kcal Total: -78.94 0.13 -78.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335300085.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.231 kcal (2) G-P(sol) polarization free energy of solvation -78.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds