Wall clock time and date at job start Tue Mar 31 2020 07:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.12897 * 2 1 4 4 C 1.53200 * 110.10219 * 121.59405 * 2 1 3 5 5 N 1.46446 * 113.70353 * 146.74483 * 4 2 1 6 6 C 1.46503 * 126.07998 * 178.25086 * 5 4 2 7 7 C 1.50698 * 109.47325 * 85.00117 * 6 5 4 8 8 C 1.38635 * 119.75492 * 89.99887 * 7 6 5 9 9 C 1.37611 * 120.25212 * 179.97438 * 8 7 6 10 10 C 1.40717 * 119.74429 * 359.97438 * 9 8 7 11 11 C 1.41393 * 120.24544 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00167 * 334.84990 * 11 10 9 13 13 C 1.39947 * 120.00447 * 154.85088 * 11 10 9 14 14 N 1.30829 * 119.99580 * 334.27844 * 13 11 10 15 15 Si 1.86794 * 120.00413 * 154.27772 * 13 11 10 16 16 H 1.48504 * 109.47556 * 180.02562 * 15 13 11 17 17 H 1.48495 * 109.47307 * 60.00117 * 15 13 11 18 18 H 1.48499 * 109.47060 * 300.00218 * 15 13 11 19 19 C 1.40717 * 119.51251 * 0.27207 * 10 9 8 20 20 C 1.37622 * 119.74258 * 359.45159 * 19 10 9 21 21 S 1.67287 * 107.83501 * 358.50714 * 5 4 2 22 22 O 1.42101 * 105.40070 * 94.73250 * 21 5 4 23 23 O 1.42096 * 105.40990 * 224.99317 * 21 5 4 24 24 C 1.55564 * 110.09973 * 238.40674 * 2 1 3 25 25 H 1.08994 * 109.47040 * 298.40418 * 1 2 3 26 26 H 1.09000 * 109.47297 * 58.40405 * 1 2 3 27 27 H 1.09003 * 109.46875 * 178.40414 * 1 2 3 28 28 H 1.09003 * 108.64349 * 25.63062 * 4 2 1 29 29 H 1.09000 * 108.64588 * 267.85789 * 4 2 1 30 30 H 1.08998 * 109.47373 * 324.99434 * 6 5 4 31 31 H 1.09008 * 109.46864 * 204.99674 * 6 5 4 32 32 H 1.07997 * 119.87250 * 359.97438 * 8 7 6 33 33 H 1.07999 * 120.13162 * 179.97438 * 9 8 7 34 34 H 0.96996 * 120.00212 * 354.29995 * 14 13 11 35 35 H 1.07998 * 120.12873 * 179.72603 * 19 10 9 36 36 H 1.07997 * 119.87625 * 180.27232 * 20 19 10 37 37 H 1.08999 * 111.36869 * 321.41716 * 24 2 1 38 38 H 1.08997 * 111.36733 * 86.16691 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9051 1.0234 0.0000 4 6 2.0566 -0.7537 1.2254 5 7 3.3119 -1.4678 0.9828 6 6 4.0690 -2.2417 1.9699 7 6 3.5153 -3.6414 2.0427 8 6 4.0288 -4.6283 1.2155 9 6 3.5312 -5.9100 1.2739 10 6 2.4976 -6.2171 2.1780 11 6 1.9788 -7.5306 2.2472 12 1 2.0496 -8.1850 1.3910 13 6 1.3734 -7.9828 3.4251 14 7 1.7030 -7.4529 4.5750 15 14 0.0948 -9.3428 3.3557 16 1 -0.3905 -9.6366 4.7281 17 1 0.7038 -10.5655 2.7732 18 1 -1.0459 -8.9071 2.5105 19 6 1.9805 -5.2062 3.0091 20 6 2.4973 -3.9327 2.9377 21 16 3.7314 -1.2367 -0.6200 22 8 4.6215 -0.1290 -0.6213 23 8 4.1216 -2.5172 -1.0966 24 6 2.0647 -0.7653 -1.2444 25 1 -0.3633 0.4888 0.9039 26 1 -0.3634 0.5384 -0.8753 27 1 -0.3633 -1.0273 -0.0286 28 1 1.3019 -1.4734 1.5427 29 1 2.2126 -0.0391 2.0336 30 1 3.9843 -1.7661 2.9470 31 1 5.1175 -2.2807 1.6744 32 1 4.8223 -4.3903 0.5227 33 1 3.9323 -6.6772 0.6283 34 1 2.4245 -6.8063 4.6220 35 1 1.1841 -5.4298 3.7035 36 1 2.1051 -3.1562 3.5777 37 1 1.4560 -1.6428 -1.4627 38 1 2.1374 -0.1103 -2.1125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335300096.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:35 Heat of formation + Delta-G solvation = -78.201716 kcal Electronic energy + Delta-G solvation = -21854.122522 eV Core-core repulsion = 18594.039205 eV Total energy + Delta-G solvation = -3260.083317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.85047 -38.67403 -38.01123 -36.94530 -36.21109 -34.69293 -31.80959 -31.20681 -28.91238 -28.47913 -26.51796 -24.79797 -23.01987 -22.00151 -21.78618 -19.89726 -19.81954 -18.16170 -17.65822 -17.00380 -16.63566 -16.29987 -16.04956 -15.87416 -15.67739 -15.46098 -14.53539 -14.38041 -14.02179 -13.93432 -13.86958 -13.76670 -13.36327 -13.20655 -13.13754 -13.03841 -12.96415 -12.64685 -12.45643 -12.16888 -12.00960 -11.94686 -11.80923 -11.45861 -11.37869 -11.33620 -10.86665 -9.82054 -9.58651 -9.40575 -9.15023 -6.45747 -0.73508 0.82869 0.99134 1.50099 1.52909 1.72113 1.80217 2.33168 2.62232 2.69841 2.91830 3.29908 3.57611 3.59038 3.92201 3.97960 4.26034 4.29620 4.42200 4.46003 4.50495 4.60799 4.70530 4.75662 4.78222 4.86895 5.03691 5.05759 5.14830 5.20356 5.26058 5.38582 5.45919 5.71125 5.77773 5.80891 5.85979 6.13028 6.26682 6.43805 6.81984 6.93762 8.03569 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023608 B = 0.004231 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.752650 B = 6615.933126 C = 6991.151412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 H 0.123 0.877 4 C 0.073 3.927 5 N -0.982 5.982 6 C 0.222 3.778 7 C -0.234 4.234 8 C -0.058 4.058 9 C -0.254 4.254 10 C 0.074 3.926 11 C -0.563 4.563 12 H 0.065 0.935 13 C 0.007 3.993 14 N -0.815 5.815 15 Si 1.116 2.884 16 H -0.268 1.268 17 H -0.261 1.261 18 H -0.264 1.264 19 C -0.241 4.241 20 C -0.058 4.058 21 S 2.543 3.457 22 O -0.991 6.991 23 O -0.999 6.999 24 C -0.558 4.558 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.284 0.716 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.149 0.851 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.713 15.672 -6.503 17.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 H 0.141 0.859 4 C -0.053 4.053 5 N -0.823 5.823 6 C 0.099 3.901 7 C -0.237 4.237 8 C -0.077 4.077 9 C -0.273 4.273 10 C 0.071 3.929 11 C -0.591 4.591 12 H 0.084 0.916 13 C -0.210 4.210 14 N -0.438 5.438 15 Si 0.933 3.067 16 H -0.193 1.193 17 H -0.185 1.185 18 H -0.188 1.188 19 C -0.260 4.260 20 C -0.077 4.077 21 S 2.645 3.355 22 O -0.981 6.981 23 O -0.988 6.988 24 C -0.692 4.692 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.138 0.862 37 H 0.167 0.833 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.678 14.684 -5.881 16.495 hybrid contribution 0.884 0.458 -0.865 1.319 sum -3.794 15.142 -6.746 17.005 Atomic orbital electron populations 1.21751 0.90351 1.03030 1.04149 1.22106 1.00426 1.00136 0.88410 0.85912 1.21914 0.86333 0.96878 1.00160 1.57072 1.33644 1.63990 1.27580 1.19585 0.92190 0.86121 0.92213 1.19794 1.04363 0.96206 1.03301 1.20740 0.97955 0.92709 0.96316 1.21078 1.02233 0.97026 1.06972 1.18002 0.89635 0.93796 0.91436 1.20772 1.37259 0.99143 1.01910 0.91647 1.28402 0.99690 1.02321 0.90544 1.70568 1.23633 1.22346 1.27264 0.83018 0.73593 0.72511 0.77546 1.19254 1.18545 1.18826 1.21113 1.04291 0.94053 1.06566 1.20711 0.95130 0.95104 0.96740 1.07019 0.79046 0.73945 0.75511 1.93576 1.63180 1.55187 1.86122 1.93567 1.83332 1.41498 1.80442 1.30776 1.18164 1.12120 1.08160 0.90309 0.89818 0.92595 0.91414 0.88805 0.88358 0.91109 0.87996 0.89713 0.90412 0.89185 0.86171 0.83323 0.81136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 9.04 71.98 0.65 -0.83 16 2 C -0.09 -1.27 3.29 -9.84 -0.03 -1.30 16 3 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 4 C 0.07 1.46 6.43 86.46 0.56 2.02 16 5 N -0.98 -27.24 3.32 -519.60 -1.72 -28.96 16 6 C 0.22 7.06 6.35 85.63 0.54 7.61 16 7 C -0.23 -9.63 5.49 -19.67 -0.11 -9.74 16 8 C -0.06 -2.74 9.32 22.22 0.21 -2.53 16 9 C -0.25 -13.39 9.80 22.73 0.22 -13.16 16 10 C 0.07 4.10 5.30 -21.29 -0.11 3.99 16 11 C -0.56 -31.49 8.98 23.46 0.21 -31.28 16 12 H 0.07 3.63 7.96 -2.91 -0.02 3.61 16 13 C 0.01 0.35 4.93 85.26 0.42 0.77 16 14 N -0.82 -44.35 12.32 21.83 0.27 -44.08 16 15 Si 1.12 43.69 30.00 68.60 2.06 45.75 16 16 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 17 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 18 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 19 C -0.24 -12.34 7.96 22.73 0.18 -12.15 16 20 C -0.06 -2.49 9.67 22.22 0.21 -2.28 16 21 S 2.54 70.24 6.19 -56.49 -0.35 69.89 16 22 O -0.99 -31.53 18.14 -127.81 -2.32 -33.85 16 23 O -1.00 -37.19 17.13 -127.81 -2.19 -39.38 16 24 C -0.56 -8.92 7.06 72.87 0.51 -8.41 16 25 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 0.76 8.12 -2.39 -0.02 0.74 16 28 H 0.07 1.50 7.75 -2.39 -0.02 1.48 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.10 2.60 8.08 -2.39 -0.02 2.58 16 31 H 0.07 2.22 8.08 -2.38 -0.02 2.20 16 32 H 0.10 4.63 7.50 -2.91 -0.02 4.61 16 33 H 0.08 4.43 8.06 -2.91 -0.02 4.41 16 34 H 0.28 16.05 6.70 -92.71 -0.62 15.43 16 35 H 0.09 4.80 6.50 -2.91 -0.02 4.78 16 36 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 37 H 0.15 2.36 8.08 -2.39 -0.02 2.34 16 38 H 0.17 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -73.57 327.65 0.41 -73.16 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 1.20 Total: 24.78 kcal Atomic # 6 Polarization: -70.77 SS G_CDS: 3.47 Total: -67.30 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -1.45 Total: -73.04 kcal Atomic # 8 Polarization: -68.73 SS G_CDS: -4.51 Total: -73.24 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.06 Total: 45.75 kcal Atomic # 16 Polarization: 70.24 SS G_CDS: -0.35 Total: 69.89 kcal Total: -73.57 0.41 -73.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335300096.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.042 kcal (2) G-P(sol) polarization free energy of solvation -73.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds