Wall clock time and date at job start Tue Mar 31 2020 07:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47319 * 60.00570 * 8 6 4 10 10 H 1.48503 * 109.46734 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47266 * 300.00384 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.34769 * 119.99798 * 274.99913 * 12 2 1 14 14 O 1.21547 * 120.00429 * 0.02562 * 13 12 2 15 15 C 1.47851 * 119.99649 * 179.97438 * 13 12 2 16 16 C 1.39594 * 120.14449 * 359.72746 * 15 13 12 17 17 C 1.37937 * 119.85403 * 179.74727 * 16 15 13 18 18 C 1.38388 * 120.14290 * 0.52810 * 17 16 15 19 19 C 1.38337 * 120.28856 * 359.74393 * 18 17 16 20 20 C 1.50700 * 119.92300 * 180.02562 * 19 18 17 21 21 S 1.81400 * 109.47076 * 269.97719 * 20 19 18 22 22 C 1.81404 * 103.00151 * 180.02562 * 21 20 19 23 23 O 1.42095 * 109.47352 * 296.38827 * 21 20 19 24 24 C 1.37975 * 120.14995 * 359.97438 * 19 18 17 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 29 29 H 0.97005 * 119.99239 * 94.99888 * 12 2 1 30 30 H 1.08005 * 120.07249 * 359.97438 * 16 15 13 31 31 H 1.07993 * 119.93061 * 180.26911 * 17 16 15 32 32 H 1.07994 * 119.85039 * 179.72346 * 18 17 16 33 33 H 1.08996 * 109.47470 * 29.97979 * 20 19 18 34 34 H 1.09000 * 109.47154 * 149.98102 * 20 19 18 35 35 H 1.08998 * 109.46818 * 59.99938 * 22 21 20 36 36 H 1.08991 * 109.47444 * 179.97438 * 22 21 20 37 37 H 1.09000 * 109.47047 * 300.00471 * 22 21 20 38 38 H 1.07998 * 120.07346 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5201 -4.0078 10 1 1.8266 -0.4198 -5.2204 11 1 3.8062 -1.1209 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8576 1.1610 2.4118 15 6 2.6394 -0.7154 3.5644 16 6 2.9663 -2.0713 3.5066 17 6 3.4301 -2.7145 4.6353 18 6 3.5611 -2.0212 5.8258 19 6 3.2334 -0.6788 5.8912 20 6 3.3798 0.0683 7.1918 21 16 1.8319 -0.0438 8.1310 22 6 2.1988 0.8996 9.6363 23 8 0.7922 0.6022 7.4094 24 6 2.7739 -0.0221 4.7681 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.7092 1.1618 -3.4843 29 1 2.2490 -1.6318 1.1525 30 1 2.8599 -2.6146 2.5793 31 1 3.6875 -3.7624 4.5909 32 1 3.9204 -2.5306 6.7077 33 1 4.1904 -0.3704 7.7736 34 1 3.6051 1.1147 6.9863 35 1 2.4534 1.9252 9.3693 36 1 1.3242 0.9004 10.2868 37 1 3.0391 0.4405 10.1571 38 1 2.5189 1.0260 4.8204 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338089809.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:24 Heat of formation + Delta-G solvation = -53.358005 kcal Electronic energy + Delta-G solvation = -20774.288212 eV Core-core repulsion = 17515.282199 eV Total energy + Delta-G solvation = -3259.006012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.80306 -38.04649 -35.86309 -34.79614 -33.21764 -32.19619 -31.02997 -29.33001 -28.78857 -27.00223 -25.24306 -23.79395 -21.86193 -20.88182 -19.33924 -17.94795 -17.49070 -16.29862 -15.88334 -15.58105 -15.48049 -15.14725 -14.98082 -14.38682 -14.20788 -14.15398 -13.79594 -13.33743 -13.12203 -12.89126 -12.79967 -12.49688 -12.30862 -11.95632 -11.67820 -11.57789 -11.13991 -11.08359 -10.94541 -10.72327 -10.55443 -10.31452 -10.21328 -9.12235 -9.03340 -8.99087 -8.86325 -8.53645 -8.29802 -7.89023 -6.10548 -4.20288 0.85517 1.14696 1.61555 2.36411 3.26544 3.31292 3.32046 3.33273 3.57167 4.03321 4.19647 4.37634 4.47913 4.66501 4.80812 4.90683 4.97425 5.01712 5.21324 5.27256 5.34410 5.45842 5.58172 5.61077 5.87652 5.99200 6.37787 6.41304 6.49311 6.85165 6.90020 7.01131 7.17791 7.46947 7.58091 7.71123 7.93667 8.16650 8.66333 8.78872 9.11738 9.46982 10.95504 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.031800 B = 0.003115 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.301071 B = 8987.641396 C = 9562.792172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.701 5.701 13 C 0.539 3.461 14 O -0.549 6.549 15 C -0.115 4.115 16 C -0.088 4.088 17 C -0.125 4.125 18 C -0.101 4.101 19 C -0.084 4.084 20 C -0.404 4.404 21 S 1.246 4.754 22 C -0.497 4.497 23 O -0.834 6.834 24 C -0.055 4.055 25 H 0.015 0.985 26 H 0.091 0.909 27 H 0.027 0.973 28 H 0.265 0.735 29 H 0.388 0.612 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.575 -9.486 23.725 26.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.349 5.349 13 C 0.325 3.675 14 O -0.429 6.429 15 C -0.118 4.118 16 C -0.107 4.107 17 C -0.143 4.143 18 C -0.120 4.120 19 C -0.085 4.085 20 C -0.539 4.539 21 S 1.444 4.556 22 C -0.654 4.654 23 O -0.830 6.830 24 C -0.075 4.075 25 H 0.034 0.966 26 H 0.109 0.891 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.222 0.778 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.404 -8.912 23.340 25.561 hybrid contribution 1.027 1.316 -1.323 2.130 sum 6.431 -7.596 22.017 24.162 Atomic orbital electron populations 1.22082 0.98324 0.99208 1.01009 1.18780 0.91137 0.94032 0.79797 0.93276 1.21170 1.32582 1.13280 0.90304 0.92095 1.24895 0.94795 0.94961 0.99058 1.69898 1.35753 1.22384 1.24012 0.86489 0.79140 0.79580 0.81766 1.20122 1.21114 1.20177 1.46483 1.64513 1.13520 1.10359 1.18244 0.79021 0.86854 0.83422 1.90731 1.51358 1.15741 1.85060 1.20319 1.02090 0.94384 0.94991 1.21459 0.96674 0.93520 0.99076 1.21059 1.00492 1.00151 0.92567 1.21133 0.99339 0.93183 0.98353 1.18962 1.02221 0.94157 0.93164 1.26666 1.17956 1.05272 1.04002 1.70742 0.82562 1.13975 0.88293 1.27722 1.08824 1.11411 1.17422 1.93219 1.43839 1.76570 1.69323 1.21189 0.94906 1.00611 0.90823 0.96562 0.89056 0.95389 0.92485 0.77839 0.85190 0.85215 0.85132 0.85515 0.88536 0.90133 0.87700 0.87028 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.26 37.16 0.34 -3.52 16 2 C 0.26 7.03 2.56 -69.08 -0.18 6.85 16 3 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 4 C -0.53 -14.51 8.73 -34.44 -0.30 -14.81 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -25.43 11.32 55.43 0.63 -24.80 16 8 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.70 -15.59 5.02 -55.88 -0.28 -15.88 16 13 C 0.54 12.05 7.74 -12.33 -0.10 11.95 16 14 O -0.55 -14.55 16.01 5.32 0.09 -14.46 16 15 C -0.11 -2.01 5.87 -104.97 -0.62 -2.63 16 16 C -0.09 -1.19 9.54 -39.19 -0.37 -1.57 16 17 C -0.12 -1.28 10.03 -39.64 -0.40 -1.67 16 18 C -0.10 -0.92 9.69 -39.49 -0.38 -1.31 16 19 C -0.08 -0.98 5.13 -104.68 -0.54 -1.52 16 20 C -0.40 -3.29 6.05 36.01 0.22 -3.07 16 21 S 1.25 9.62 13.78 -107.50 -1.48 8.14 16 22 C -0.50 -2.80 10.74 101.05 1.09 -1.71 16 23 O -0.83 -13.37 18.14 -35.23 -0.64 -14.01 16 24 C -0.06 -0.91 9.24 -39.19 -0.36 -1.27 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 2.56 6.07 -51.93 -0.32 2.24 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.39 7.34 6.57 -40.82 -0.27 7.07 16 30 H 0.13 1.58 6.41 -52.48 -0.34 1.25 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.13 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.10 0.91 8.08 -51.92 -0.42 0.49 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.11 0.28 8.14 -51.92 -0.42 -0.15 16 38 H 0.13 2.43 7.65 -52.49 -0.40 2.03 16 LS Contribution 338.34 15.07 5.10 5.10 Total: -1.00 -38.76 338.34 -8.36 -47.11 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.05 Total: 5.47 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -1.69 Total: -12.54 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.35 Total: -40.68 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.55 Total: -28.47 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 9.62 SS G_CDS: -1.48 Total: 8.14 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -38.76 -8.36 -47.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338089809.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.246 kcal (2) G-P(sol) polarization free energy of solvation -38.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds