Wall clock time and date at job start Tue Mar 31 2020 07:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47319 * 60.00570 * 8 6 4 10 10 H 1.48503 * 109.46734 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47266 * 300.00384 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.34769 * 119.99798 * 274.99913 * 12 2 1 14 14 O 1.21547 * 120.00429 * 0.02562 * 13 12 2 15 15 C 1.47851 * 119.99649 * 179.97438 * 13 12 2 16 16 C 1.39594 * 120.14449 * 359.72746 * 15 13 12 17 17 C 1.37937 * 119.85403 * 179.74727 * 16 15 13 18 18 C 1.38388 * 120.14290 * 0.52810 * 17 16 15 19 19 C 1.38337 * 120.28856 * 359.74393 * 18 17 16 20 20 C 1.50700 * 119.92300 * 180.02562 * 19 18 17 21 21 S 1.81400 * 109.47076 * 269.97719 * 20 19 18 22 22 C 1.81404 * 103.00151 * 180.02562 * 21 20 19 23 23 O 1.42095 * 109.47352 * 296.38827 * 21 20 19 24 24 C 1.37975 * 120.14995 * 359.97438 * 19 18 17 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 29 29 H 0.97005 * 119.99239 * 94.99888 * 12 2 1 30 30 H 1.08005 * 120.07249 * 359.97438 * 16 15 13 31 31 H 1.07993 * 119.93061 * 180.26911 * 17 16 15 32 32 H 1.07994 * 119.85039 * 179.72346 * 18 17 16 33 33 H 1.08996 * 109.47470 * 29.97979 * 20 19 18 34 34 H 1.09000 * 109.47154 * 149.98102 * 20 19 18 35 35 H 1.08998 * 109.46818 * 59.99938 * 22 21 20 36 36 H 1.08991 * 109.47444 * 179.97438 * 22 21 20 37 37 H 1.09000 * 109.47047 * 300.00471 * 22 21 20 38 38 H 1.07998 * 120.07346 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5201 -4.0078 10 1 1.8266 -0.4198 -5.2204 11 1 3.8062 -1.1209 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8576 1.1610 2.4118 15 6 2.6394 -0.7154 3.5644 16 6 2.9663 -2.0713 3.5066 17 6 3.4301 -2.7145 4.6353 18 6 3.5611 -2.0212 5.8258 19 6 3.2334 -0.6788 5.8912 20 6 3.3798 0.0683 7.1918 21 16 1.8319 -0.0438 8.1310 22 6 2.1988 0.8996 9.6363 23 8 0.7922 0.6022 7.4094 24 6 2.7739 -0.0221 4.7681 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.7092 1.1618 -3.4843 29 1 2.2490 -1.6318 1.1525 30 1 2.8599 -2.6146 2.5793 31 1 3.6875 -3.7624 4.5909 32 1 3.9204 -2.5306 6.7077 33 1 4.1904 -0.3704 7.7736 34 1 3.6051 1.1147 6.9863 35 1 2.4534 1.9252 9.3693 36 1 1.3242 0.9004 10.2868 37 1 3.0391 0.4405 10.1571 38 1 2.5189 1.0260 4.8204 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338089809.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:23 Heat of formation + Delta-G solvation = -83.964184 kcal Electronic energy + Delta-G solvation = -20775.615395 eV Core-core repulsion = 17515.282199 eV Total energy + Delta-G solvation = -3260.333196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20147 -39.47689 -36.83944 -36.82790 -34.66137 -33.75351 -32.19843 -30.72481 -29.80724 -27.86934 -27.41298 -25.21543 -22.85548 -22.69276 -21.11937 -19.35450 -18.37829 -17.88404 -17.40851 -16.90876 -16.44496 -16.31895 -16.13488 -15.96251 -15.68621 -15.14570 -14.92803 -14.67962 -14.52709 -14.14551 -13.78271 -13.61304 -13.50807 -13.31396 -13.04275 -12.92831 -12.78568 -12.71832 -12.51226 -12.32837 -12.17926 -12.13343 -11.43676 -11.20087 -10.93154 -10.64152 -10.06119 -9.88640 -9.72533 -9.09651 -8.21459 -6.40861 -0.12207 0.15741 0.86210 1.42860 1.46463 1.54387 1.76509 1.95541 2.29143 2.52083 2.86723 2.95377 3.08768 3.62519 3.78975 3.94163 4.14102 4.22958 4.30738 4.39859 4.54889 4.59609 4.66711 4.76664 4.82427 4.90887 5.00011 5.08354 5.17003 5.31412 5.40096 5.45568 5.49500 5.52567 5.59282 5.82767 5.99622 6.00925 6.65296 6.83349 7.24848 7.41935 8.85480 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.031800 B = 0.003115 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.301071 B = 8987.641396 C = 9562.792172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H -0.006 1.006 4 C -0.550 4.550 5 H 0.078 0.922 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.980 3.020 9 H -0.259 1.259 10 H -0.286 1.286 11 H -0.269 1.269 12 N -0.694 5.694 13 C 0.531 3.469 14 O -0.609 6.609 15 C -0.152 4.152 16 C -0.092 4.092 17 C -0.111 4.111 18 C -0.071 4.071 19 C -0.085 4.085 20 C -0.402 4.402 21 S 1.292 4.708 22 C -0.487 4.487 23 O -0.932 6.932 24 C -0.089 4.089 25 H 0.003 0.997 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.267 0.733 29 H 0.406 0.594 30 H 0.140 0.860 31 H 0.179 0.821 32 H 0.198 0.802 33 H 0.188 0.812 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.158 0.842 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.354 -14.074 26.377 31.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.012 0.988 4 C -0.587 4.587 5 H 0.096 0.904 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.804 3.196 9 H -0.184 1.184 10 H -0.211 1.211 11 H -0.194 1.194 12 N -0.343 5.343 13 C 0.320 3.680 14 O -0.493 6.493 15 C -0.155 4.155 16 C -0.111 4.111 17 C -0.129 4.129 18 C -0.090 4.090 19 C -0.086 4.086 20 C -0.537 4.537 21 S 1.493 4.507 22 C -0.646 4.646 23 O -0.927 6.927 24 C -0.110 4.110 25 H 0.022 0.978 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.243 0.757 30 H 0.158 0.842 31 H 0.196 0.804 32 H 0.215 0.785 33 H 0.205 0.795 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.129 0.871 37 H 0.177 0.823 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.183 -13.556 25.998 30.441 hybrid contribution 0.260 2.761 -1.916 3.371 sum 8.444 -10.795 24.082 27.708 Atomic orbital electron populations 1.21915 0.98317 0.99678 0.99370 1.18408 0.91172 0.91872 0.81934 0.98843 1.21489 1.32986 1.13804 0.90466 0.90393 1.25919 0.94712 0.95576 1.02627 1.70068 1.36905 1.24008 1.24860 0.85275 0.78651 0.78743 0.76931 1.18389 1.21132 1.19393 1.46187 1.64530 1.14213 1.09357 1.19162 0.77661 0.86383 0.84767 1.90677 1.53967 1.18560 1.86138 1.19959 1.06262 0.96384 0.92892 1.21666 0.96672 0.91467 1.01333 1.21656 0.97845 1.02156 0.91204 1.21900 0.95453 0.91421 1.00233 1.19336 1.00854 0.95784 0.92661 1.26766 1.19536 1.04334 1.03110 1.69467 0.80474 1.13256 0.87458 1.27641 1.11022 1.10270 1.15653 1.93088 1.48766 1.78801 1.72090 1.21112 0.97818 0.99120 0.92956 0.97760 0.91050 0.93621 0.92416 0.75695 0.84229 0.80375 0.78482 0.79502 0.90598 0.91830 0.87086 0.82345 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.45 9.26 71.98 0.67 -6.78 16 2 C 0.27 15.25 2.56 44.24 0.11 15.37 16 3 H -0.01 -0.42 7.58 -2.39 -0.02 -0.44 16 4 C -0.55 -30.44 8.73 25.60 0.22 -30.22 16 5 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -55.04 11.32 21.45 0.24 -54.80 16 8 Si 0.98 42.86 29.54 68.60 2.03 44.88 16 9 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 10 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 12 N -0.69 -32.69 5.02 -448.98 -2.25 -34.95 16 13 C 0.53 25.90 7.74 86.79 0.67 26.57 16 14 O -0.61 -36.14 16.01 -3.86 -0.06 -36.20 16 15 C -0.15 -5.62 5.87 -20.09 -0.12 -5.73 16 16 C -0.09 -2.35 9.54 22.53 0.21 -2.14 16 17 C -0.11 -1.69 10.03 22.23 0.22 -1.46 16 18 C -0.07 -0.89 9.69 22.33 0.22 -0.67 16 19 C -0.09 -1.82 5.13 -19.90 -0.10 -1.92 16 20 C -0.40 -5.43 6.05 71.24 0.43 -5.00 16 21 S 1.29 17.90 13.78 -56.49 -0.78 17.12 16 22 C -0.49 -4.00 10.74 113.37 1.22 -2.78 16 23 O -0.93 -31.77 18.14 -148.98 -2.70 -34.48 16 24 C -0.09 -3.15 9.24 22.53 0.21 -2.94 16 25 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 26 H 0.07 4.24 6.07 -2.39 -0.01 4.23 16 27 H 0.04 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.41 15.71 6.57 -92.70 -0.61 15.10 16 30 H 0.14 3.15 6.41 -2.91 -0.02 3.13 16 31 H 0.18 1.12 8.06 -2.91 -0.02 1.09 16 32 H 0.20 -0.05 8.06 -2.91 -0.02 -0.07 16 33 H 0.19 0.21 8.08 -2.39 -0.02 0.19 16 34 H 0.08 1.41 8.08 -2.39 -0.02 1.39 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.11 0.89 8.14 -2.40 -0.02 0.87 16 37 H 0.16 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.08 3.65 7.65 -2.91 -0.02 3.63 16 Total: -1.00 -98.29 338.34 1.35 -96.94 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.46 Total: 18.09 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 4.41 Total: -16.61 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -2.01 Total: -89.75 kcal Atomic # 8 Polarization: -67.92 SS G_CDS: -2.76 Total: -70.68 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: 17.90 SS G_CDS: -0.78 Total: 17.12 kcal Total: -98.29 1.35 -96.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338089809.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.977 kcal (2) G-P(sol) polarization free energy of solvation -98.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds