Wall clock time and date at job start Tue Mar 31 2020 07:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.50698 * 109.47387 * 119.99880 * 2 1 3 5 5 H 1.07999 * 120.00181 * 119.99635 * 4 2 1 6 6 C 1.37879 * 120.00000 * 300.00183 * 4 2 1 7 7 N 1.31509 * 120.00111 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99810 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47592 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46806 * 120.00321 * 8 6 4 11 11 H 1.48504 * 109.46778 * 239.99753 * 8 6 4 12 12 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 13 13 C 1.34777 * 119.99724 * 85.00158 * 12 2 1 14 14 O 1.21553 * 120.00290 * 359.97438 * 13 12 2 15 15 C 1.47849 * 119.99699 * 179.72334 * 13 12 2 16 16 C 1.39599 * 120.14311 * 0.02562 * 15 13 12 17 17 C 1.37940 * 119.84936 * 179.74184 * 16 15 13 18 18 C 1.38380 * 120.14554 * 0.50844 * 17 16 15 19 19 C 1.38340 * 120.29306 * 359.76596 * 18 17 16 20 20 C 1.50695 * 119.92771 * 180.02562 * 19 18 17 21 21 S 1.81404 * 109.47241 * 269.97738 * 20 19 18 22 22 C 1.81397 * 103.00099 * 180.02562 * 21 20 19 23 23 O 1.42104 * 109.46828 * 63.61249 * 21 20 19 24 24 C 1.37978 * 120.14468 * 359.97438 * 19 18 17 25 25 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47061 * 300.00127 * 1 2 3 27 27 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 28 28 H 0.97000 * 120.00320 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99792 * 264.99726 * 12 2 1 30 30 H 1.07997 * 120.07554 * 359.97438 * 16 15 13 31 31 H 1.07997 * 119.92235 * 180.25304 * 17 16 15 32 32 H 1.07997 * 119.85084 * 179.74670 * 18 17 16 33 33 H 1.09004 * 109.47337 * 29.97866 * 20 19 18 34 34 H 1.08995 * 109.47405 * 149.97664 * 20 19 18 35 35 H 1.09001 * 109.47012 * 59.99605 * 22 21 20 36 36 H 1.08994 * 109.47336 * 180.02562 * 22 21 20 37 37 H 1.09003 * 109.46686 * 299.99953 * 22 21 20 38 38 H 1.07998 * 120.07638 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.1455 -2.2876 3.6038 10 1 3.1466 -0.1872 4.8164 11 1 1.1661 -1.5866 4.8161 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8575 1.1610 -2.4119 15 6 2.6457 -0.7137 -3.5628 16 6 2.9835 -2.0669 -3.5022 17 6 3.4430 -2.7111 -4.6320 18 6 3.5795 -2.0164 -5.8210 19 6 3.2518 -0.6739 -5.8865 20 6 3.4030 0.0744 -7.1857 21 16 5.0682 0.7875 -7.2826 22 6 5.0569 1.6339 -8.8869 23 8 6.0305 -0.2578 -7.3046 24 6 2.7860 -0.0189 -4.7650 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7089 1.1614 3.4844 29 1 2.2490 -1.6318 -1.1526 30 1 2.8817 -2.6090 -2.5737 31 1 3.7008 -3.7589 -4.5875 32 1 3.9436 -2.5245 -6.7017 33 1 3.2523 -0.6112 -8.0196 34 1 2.6625 0.8728 -7.2335 35 1 4.2750 2.3933 -8.8916 36 1 6.0244 2.1070 -9.0550 37 1 4.8647 0.9095 -9.6784 38 1 2.5301 1.0290 -4.8174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338089812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:28 Heat of formation + Delta-G solvation = -54.072188 kcal Electronic energy + Delta-G solvation = -20701.104056 eV Core-core repulsion = 17442.067075 eV Total energy + Delta-G solvation = -3259.036982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.82334 -38.06792 -35.90947 -34.82594 -33.23094 -32.21668 -31.03990 -29.33894 -28.81464 -27.01148 -25.26845 -23.81309 -21.84341 -20.92242 -19.36862 -17.99220 -17.51797 -16.31034 -15.87285 -15.60282 -15.56282 -15.11975 -14.94500 -14.54584 -14.22255 -14.05336 -13.86228 -13.39051 -13.09525 -12.88430 -12.82474 -12.49760 -12.37442 -11.97538 -11.71912 -11.57044 -11.14457 -11.09423 -10.96960 -10.75465 -10.60317 -10.30763 -10.24439 -9.15929 -9.04710 -8.96605 -8.88781 -8.56163 -8.29325 -7.91906 -6.13008 -4.22175 0.83416 1.14933 1.58134 2.35733 3.23873 3.30655 3.32078 3.34688 3.52795 4.01523 4.16636 4.36582 4.44752 4.67117 4.78916 4.91742 4.98676 5.03262 5.19524 5.25118 5.33904 5.43361 5.57473 5.59871 5.86543 5.98066 6.39006 6.41581 6.44102 6.81902 6.88064 6.96451 7.14301 7.43120 7.55438 7.68985 7.90821 8.13984 8.63637 8.76762 9.07855 9.45338 10.93069 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.028232 B = 0.003030 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.557408 B = 9237.204988 C = 9444.037331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.701 5.701 13 C 0.542 3.458 14 O -0.550 6.550 15 C -0.117 4.117 16 C -0.087 4.087 17 C -0.123 4.123 18 C -0.095 4.095 19 C -0.083 4.083 20 C -0.402 4.402 21 S 1.250 4.750 22 C -0.496 4.496 23 O -0.843 6.843 24 C -0.060 4.060 25 H 0.026 0.974 26 H 0.091 0.909 27 H 0.015 0.985 28 H 0.264 0.736 29 H 0.388 0.612 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.129 0.871 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.549 -0.978 -19.130 19.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.349 5.349 13 C 0.327 3.673 14 O -0.430 6.430 15 C -0.120 4.120 16 C -0.106 4.106 17 C -0.141 4.141 18 C -0.114 4.114 19 C -0.085 4.085 20 C -0.537 4.537 21 S 1.449 4.551 22 C -0.653 4.653 23 O -0.838 6.838 24 C -0.080 4.080 25 H 0.045 0.955 26 H 0.109 0.891 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.222 0.778 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.137 0.863 33 H 0.112 0.888 34 H 0.147 0.853 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.097 0.903 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.004 -0.059 -18.357 19.027 hybrid contribution -0.066 -2.432 -0.919 2.601 sum 4.938 -2.491 -19.277 20.054 Atomic orbital electron populations 1.22083 0.98353 0.99178 1.00995 1.18793 0.91093 0.94086 0.79815 0.93106 1.21250 1.32431 1.13254 0.90300 0.92012 1.24882 0.94790 0.94947 0.99059 1.69906 1.35888 1.22440 1.23803 0.86392 0.78601 0.79549 0.82552 1.19727 1.20841 1.20892 1.46509 1.64355 1.13601 1.10398 1.18202 0.78968 0.86798 0.83331 1.90716 1.51689 1.15539 1.85080 1.20316 1.02277 0.94305 0.95113 1.21455 0.96581 0.93785 0.98785 1.21043 1.00358 1.00174 0.92523 1.21155 0.98260 0.93787 0.98238 1.18949 1.02249 0.93939 0.93340 1.26649 1.19595 1.08162 0.99319 1.71128 0.82921 1.02937 0.98140 1.27712 1.08374 1.10202 1.18999 1.93130 1.50642 1.58320 1.81752 1.21162 0.95721 1.00670 0.90437 0.95460 0.89062 0.96544 0.92604 0.77821 0.85177 0.85502 0.86289 0.88758 0.85254 0.86807 0.87644 0.90317 0.83949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.65 2.56 -69.08 -0.18 6.48 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.53 -14.02 8.73 -34.44 -0.30 -14.33 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.61 11.32 55.43 0.63 -23.98 16 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.70 -14.63 5.02 -55.88 -0.28 -14.91 16 13 C 0.54 10.91 7.74 -12.33 -0.10 10.81 16 14 O -0.55 -12.84 16.01 5.32 0.09 -12.75 16 15 C -0.12 -1.85 5.87 -104.97 -0.62 -2.47 16 16 C -0.09 -1.18 9.54 -39.18 -0.37 -1.55 16 17 C -0.12 -1.48 10.03 -39.64 -0.40 -1.88 16 18 C -0.09 -1.15 9.69 -39.49 -0.38 -1.54 16 19 C -0.08 -0.98 5.13 -104.68 -0.54 -1.51 16 20 C -0.40 -3.27 6.05 36.00 0.22 -3.05 16 21 S 1.25 9.83 13.78 -107.50 -1.48 8.35 16 22 C -0.50 -2.81 10.74 101.05 1.09 -1.72 16 23 O -0.84 -12.21 18.14 -35.23 -0.64 -12.85 16 24 C -0.06 -0.81 9.24 -39.19 -0.36 -1.17 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 29 H 0.39 7.01 6.57 -40.82 -0.27 6.74 16 30 H 0.13 1.59 6.41 -52.49 -0.34 1.25 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 32 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.09 0.74 8.08 -51.92 -0.42 0.32 16 34 H 0.13 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.11 0.36 8.14 -51.92 -0.42 -0.06 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.52 8.14 -51.92 -0.42 0.09 16 38 H 0.14 1.77 7.65 -52.49 -0.40 1.37 16 LS Contribution 338.34 15.07 5.10 5.10 Total: -1.00 -35.52 338.34 -8.36 -43.87 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.05 Total: 5.27 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -1.69 Total: -13.55 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.35 Total: -38.89 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.55 Total: -25.61 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 9.83 SS G_CDS: -1.48 Total: 8.35 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.52 -8.36 -43.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338089812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.198 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds