Wall clock time and date at job start Tue Mar 31 2020 07:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.50698 * 109.47387 * 119.99880 * 2 1 3 5 5 H 1.07999 * 120.00181 * 119.99635 * 4 2 1 6 6 C 1.37879 * 120.00000 * 300.00183 * 4 2 1 7 7 N 1.31509 * 120.00111 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99810 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47592 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46806 * 120.00321 * 8 6 4 11 11 H 1.48504 * 109.46778 * 239.99753 * 8 6 4 12 12 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 13 13 C 1.34777 * 119.99724 * 85.00158 * 12 2 1 14 14 O 1.21553 * 120.00290 * 359.97438 * 13 12 2 15 15 C 1.47849 * 119.99699 * 179.72334 * 13 12 2 16 16 C 1.39599 * 120.14311 * 0.02562 * 15 13 12 17 17 C 1.37940 * 119.84936 * 179.74184 * 16 15 13 18 18 C 1.38380 * 120.14554 * 0.50844 * 17 16 15 19 19 C 1.38340 * 120.29306 * 359.76596 * 18 17 16 20 20 C 1.50695 * 119.92771 * 180.02562 * 19 18 17 21 21 S 1.81404 * 109.47241 * 269.97738 * 20 19 18 22 22 C 1.81397 * 103.00099 * 180.02562 * 21 20 19 23 23 O 1.42104 * 109.46828 * 63.61249 * 21 20 19 24 24 C 1.37978 * 120.14468 * 359.97438 * 19 18 17 25 25 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47061 * 300.00127 * 1 2 3 27 27 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 28 28 H 0.97000 * 120.00320 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99792 * 264.99726 * 12 2 1 30 30 H 1.07997 * 120.07554 * 359.97438 * 16 15 13 31 31 H 1.07997 * 119.92235 * 180.25304 * 17 16 15 32 32 H 1.07997 * 119.85084 * 179.74670 * 18 17 16 33 33 H 1.09004 * 109.47337 * 29.97866 * 20 19 18 34 34 H 1.08995 * 109.47405 * 149.97664 * 20 19 18 35 35 H 1.09001 * 109.47012 * 59.99605 * 22 21 20 36 36 H 1.08994 * 109.47336 * 180.02562 * 22 21 20 37 37 H 1.09003 * 109.46686 * 299.99953 * 22 21 20 38 38 H 1.07998 * 120.07638 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.1455 -2.2876 3.6038 10 1 3.1466 -0.1872 4.8164 11 1 1.1661 -1.5866 4.8161 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8575 1.1610 -2.4119 15 6 2.6457 -0.7137 -3.5628 16 6 2.9835 -2.0669 -3.5022 17 6 3.4430 -2.7111 -4.6320 18 6 3.5795 -2.0164 -5.8210 19 6 3.2518 -0.6739 -5.8865 20 6 3.4030 0.0744 -7.1857 21 16 5.0682 0.7875 -7.2826 22 6 5.0569 1.6339 -8.8869 23 8 6.0305 -0.2578 -7.3046 24 6 2.7860 -0.0189 -4.7650 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7089 1.1614 3.4844 29 1 2.2490 -1.6318 -1.1526 30 1 2.8817 -2.6090 -2.5737 31 1 3.7008 -3.7589 -4.5875 32 1 3.9436 -2.5245 -6.7017 33 1 3.2523 -0.6112 -8.0196 34 1 2.6625 0.8728 -7.2335 35 1 4.2750 2.3933 -8.8916 36 1 6.0244 2.1070 -9.0550 37 1 4.8647 0.9095 -9.6784 38 1 2.5301 1.0290 -4.8174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338089812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:28 Heat of formation + Delta-G solvation = -79.367521 kcal Electronic energy + Delta-G solvation = -20702.200944 eV Core-core repulsion = 17442.067075 eV Total energy + Delta-G solvation = -3260.133870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12951 -39.43740 -36.78362 -36.70671 -34.58622 -33.74034 -32.21052 -30.63293 -29.80132 -27.87976 -27.32797 -25.17235 -22.83812 -22.64067 -21.00958 -19.31769 -18.39731 -17.85213 -17.31446 -16.92606 -16.47052 -16.30985 -15.97714 -15.87203 -15.70917 -15.13986 -14.89480 -14.63763 -14.43055 -14.04351 -13.81530 -13.56777 -13.48713 -13.31178 -12.97572 -12.86085 -12.73909 -12.71433 -12.56707 -12.26605 -12.10836 -12.10160 -11.43633 -11.08169 -10.81483 -10.58254 -10.03946 -9.83606 -9.68443 -9.03397 -8.16274 -6.33455 -0.16285 0.18533 0.80744 1.45877 1.47138 1.58951 1.76272 2.01205 2.35182 2.58892 2.84452 2.95202 3.14527 3.63031 3.78554 3.90480 4.16632 4.21203 4.31255 4.33277 4.53923 4.59557 4.63929 4.78047 4.91644 4.94837 5.06013 5.10857 5.17225 5.36212 5.36968 5.44452 5.47854 5.61243 5.70066 5.88024 5.93693 6.11051 6.73611 6.94136 7.32551 7.50907 8.90360 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.028232 B = 0.003030 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.557408 B = 9237.204988 C = 9444.037331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H 0.004 0.996 4 C -0.547 4.547 5 H 0.072 0.928 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.972 3.028 9 H -0.261 1.261 10 H -0.283 1.283 11 H -0.279 1.279 12 N -0.700 5.700 13 C 0.540 3.460 14 O -0.591 6.591 15 C -0.141 4.141 16 C -0.090 4.090 17 C -0.121 4.121 18 C -0.100 4.100 19 C -0.081 4.081 20 C -0.400 4.400 21 S 1.272 4.728 22 C -0.485 4.485 23 O -0.914 6.914 24 C -0.063 4.063 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.014 0.986 28 H 0.266 0.734 29 H 0.403 0.597 30 H 0.140 0.860 31 H 0.155 0.845 32 H 0.132 0.868 33 H 0.102 0.898 34 H 0.162 0.838 35 H 0.147 0.853 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.991 -2.147 -20.612 21.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.022 0.978 4 C -0.586 4.586 5 H 0.090 0.910 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.797 3.203 9 H -0.185 1.185 10 H -0.209 1.209 11 H -0.204 1.204 12 N -0.348 5.348 13 C 0.329 3.671 14 O -0.473 6.473 15 C -0.145 4.145 16 C -0.109 4.109 17 C -0.138 4.138 18 C -0.120 4.120 19 C -0.082 4.082 20 C -0.535 4.535 21 S 1.474 4.526 22 C -0.644 4.644 23 O -0.910 6.910 24 C -0.083 4.083 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.239 0.761 30 H 0.158 0.842 31 H 0.172 0.828 32 H 0.150 0.850 33 H 0.120 0.880 34 H 0.180 0.820 35 H 0.165 0.835 36 H 0.129 0.871 37 H 0.092 0.908 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.464 -1.275 -19.848 20.626 hybrid contribution -0.219 -1.993 -0.633 2.102 sum 5.245 -3.268 -20.481 21.393 Atomic orbital electron populations 1.21908 0.98161 0.99494 0.99759 1.18399 0.91216 0.92110 0.81587 0.97841 1.21564 1.32608 1.13581 0.90810 0.90964 1.25775 0.94857 0.95581 1.02234 1.70047 1.36932 1.23850 1.24590 0.85300 0.78087 0.78524 0.78434 1.18478 1.20911 1.20420 1.46252 1.64693 1.14227 1.09666 1.18842 0.77771 0.86416 0.84114 1.90680 1.53407 1.17425 1.85834 1.20031 1.05107 0.95403 0.93911 1.21574 0.96490 0.92894 0.99947 1.21342 0.99275 1.01469 0.91750 1.21522 0.97404 0.94208 0.98819 1.19220 1.00783 0.94095 0.94119 1.26677 1.20157 1.09151 0.97559 1.70421 0.81494 1.01144 0.99532 1.27608 1.10057 1.10366 1.16388 1.93025 1.53524 1.60303 1.84124 1.21292 0.95722 1.01066 0.90252 0.94179 0.91279 0.96705 0.92488 0.76110 0.84204 0.82762 0.85005 0.87967 0.82024 0.83500 0.87099 0.90773 0.83329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.82 9.26 71.98 0.67 -6.15 16 2 C 0.27 14.05 2.56 44.24 0.11 14.16 16 3 H 0.00 0.22 7.58 -2.39 -0.02 0.21 16 4 C -0.55 -28.96 8.73 25.60 0.22 -28.73 16 5 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 6 C 0.02 0.84 5.30 84.66 0.45 1.29 16 7 N -0.92 -52.14 11.32 21.45 0.24 -51.90 16 8 Si 0.97 41.80 29.54 68.60 2.03 43.83 16 9 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 12 N -0.70 -29.70 5.02 -448.97 -2.25 -31.95 16 13 C 0.54 22.28 7.74 86.79 0.67 22.95 16 14 O -0.59 -28.65 16.01 -3.88 -0.06 -28.71 16 15 C -0.14 -4.45 5.87 -20.09 -0.12 -4.57 16 16 C -0.09 -2.33 9.54 22.53 0.21 -2.12 16 17 C -0.12 -2.64 10.03 22.23 0.22 -2.42 16 18 C -0.10 -2.22 9.69 22.33 0.22 -2.00 16 19 C -0.08 -1.74 5.13 -19.90 -0.10 -1.84 16 20 C -0.40 -5.40 6.05 71.23 0.43 -4.97 16 21 S 1.27 17.86 13.78 -56.49 -0.78 17.08 16 22 C -0.49 -4.03 10.74 113.37 1.22 -2.81 16 23 O -0.91 -26.02 18.14 -148.98 -2.70 -28.72 16 24 C -0.06 -1.66 9.24 22.53 0.21 -1.45 16 25 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 27 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.40 14.47 6.57 -92.71 -0.61 13.86 16 30 H 0.14 3.23 6.41 -2.91 -0.02 3.21 16 31 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 32 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 33 H 0.10 1.29 8.08 -2.39 -0.02 1.27 16 34 H 0.16 1.13 8.08 -2.39 -0.02 1.11 16 35 H 0.15 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.15 3.60 7.65 -2.91 -0.02 3.57 16 Total: -1.00 -79.24 338.34 1.35 -77.89 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.46 Total: 21.13 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 4.41 Total: -18.65 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -2.01 Total: -83.85 kcal Atomic # 8 Polarization: -54.66 SS G_CDS: -2.76 Total: -57.43 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 17.86 SS G_CDS: -0.78 Total: 17.08 kcal Total: -79.24 1.35 -77.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338089812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.477 kcal (2) G-P(sol) polarization free energy of solvation -79.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds