Wall clock time and date at job start Tue Mar 31 2020 07:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36001 * 117.00389 * 2 1 4 4 C 1.38715 * 119.98043 * 179.97438 * 3 2 1 5 5 C 1.38083 * 120.02659 * 179.97438 * 4 3 2 6 6 C 1.38916 * 119.97527 * 0.02562 * 5 4 3 7 7 S 1.76202 * 120.02286 * 179.97438 * 6 5 4 8 8 C 1.81404 * 102.99840 * 173.94053 * 7 6 5 9 9 H 1.08993 * 109.47404 * 51.22343 * 8 7 6 10 10 C 1.53005 * 109.47167 * 171.22664 * 8 7 6 11 11 C 1.50708 * 109.47146 * 291.22242 * 8 7 6 12 12 O 1.21288 * 119.99745 * 339.99914 * 11 8 7 13 13 N 1.34766 * 120.00230 * 160.00234 * 11 8 7 14 14 C 1.46499 * 120.00456 * 180.02562 * 13 11 8 15 15 C 1.50692 * 109.47558 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00003 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00101 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99974 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00089 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47308 * 89.99894 * 19 17 15 21 21 H 1.48502 * 109.47139 * 210.00088 * 19 17 15 22 22 H 1.48502 * 109.47159 * 329.99618 * 19 17 15 23 23 C 1.38919 * 119.95193 * 0.24973 * 6 5 4 24 24 C 1.38088 * 119.97301 * 359.49767 * 23 6 5 25 25 H 1.08995 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47143 * 300.00113 * 1 2 3 27 27 H 1.09005 * 109.46613 * 60.00234 * 1 2 3 28 28 H 1.08005 * 119.98154 * 359.96048 * 4 3 2 29 29 H 1.08004 * 120.00885 * 179.97438 * 5 4 3 30 30 H 1.08999 * 109.47417 * 60.77356 * 10 8 7 31 31 H 1.08993 * 109.46951 * 180.77591 * 10 8 7 32 32 H 1.09002 * 109.46854 * 300.77534 * 10 8 7 33 33 H 0.97000 * 120.00160 * 359.97438 * 13 11 8 34 34 H 1.09001 * 109.46942 * 300.00446 * 14 13 11 35 35 H 1.08997 * 109.46882 * 59.99463 * 14 13 11 36 36 H 0.96999 * 120.00291 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.01316 * 179.74794 * 23 6 5 38 38 H 1.07998 * 119.98495 * 180.22692 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4318 1.2838 0.0005 5 6 4.0597 2.5136 0.0000 6 6 3.3037 3.6789 -0.0005 7 16 4.1037 5.2489 -0.0005 8 6 2.7229 6.4104 -0.1879 9 1 1.9577 6.1883 0.5558 10 6 3.2287 7.8405 0.0122 11 6 2.1356 6.2740 -1.5691 12 8 2.7874 5.7677 -2.4579 13 7 0.8863 6.7147 -1.8167 14 6 0.3152 6.5816 -3.1592 15 6 -1.0819 7.1464 -3.1690 16 1 -1.5025 7.5625 -2.2655 17 6 -1.8231 7.1320 -4.3315 18 7 -3.0426 7.6244 -4.3400 19 14 -1.0959 6.4117 -5.8941 20 1 -1.4146 4.9631 -5.9665 21 1 -1.6728 7.1050 -7.0739 22 1 0.3778 6.5945 -5.8842 23 6 1.9164 3.6057 0.0047 24 6 1.2905 2.3748 0.0000 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 4.0194 0.3775 0.0016 29 1 5.1383 2.5693 0.0008 30 1 3.9841 8.0674 -0.7402 31 1 2.3966 8.5374 -0.0868 32 1 3.6660 7.9355 1.0061 33 1 0.3650 7.1193 -1.1058 34 1 0.9330 7.1270 -3.8726 35 1 0.2829 5.5283 -3.4375 36 1 -3.5642 7.6139 -5.1577 37 1 1.3277 4.5111 0.0084 38 1 0.2121 2.3176 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340459849.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:06 Heat of formation + Delta-G solvation = -50.097601 kcal Electronic energy + Delta-G solvation = -21118.969543 eV Core-core repulsion = 17860.104912 eV Total energy + Delta-G solvation = -3258.864631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.08314 -39.17132 -37.36404 -34.40379 -33.28314 -32.24695 -31.19290 -30.22686 -28.00869 -27.45331 -24.76354 -22.79094 -22.38657 -21.81286 -20.01728 -18.36847 -17.58913 -17.14571 -16.26236 -16.15145 -16.03876 -15.81100 -15.04689 -14.66013 -14.45738 -14.15733 -13.83687 -13.54696 -13.29476 -13.01585 -12.95420 -12.68646 -12.40977 -12.10683 -12.06857 -11.82366 -11.48029 -11.37556 -11.09307 -10.94303 -10.82500 -10.23055 -10.02435 -9.57227 -9.32633 -9.13510 -9.03285 -8.84586 -8.26458 -7.11545 -6.27964 -4.30757 1.22737 1.27426 1.52326 2.35199 3.07391 3.19105 3.21902 3.29003 3.37560 3.64354 3.78610 4.27705 4.65078 4.78586 4.81827 4.87439 4.98834 5.05464 5.07548 5.16612 5.21389 5.31177 5.38341 5.51728 5.53462 5.60349 5.87367 5.96119 6.00273 6.24016 6.27124 6.58407 6.71444 6.98786 7.09568 7.27924 7.30075 8.02126 8.39495 8.65922 8.78937 9.31851 10.83814 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012184 B = 0.005079 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.623363 B = 5511.111980 C = 7103.148388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.319 6.319 3 C 0.118 3.882 4 C -0.135 4.135 5 C -0.063 4.063 6 C -0.113 4.113 7 S -0.064 6.064 8 C -0.110 4.110 9 H 0.109 0.891 10 C -0.127 4.127 11 C 0.497 3.503 12 O -0.529 6.529 13 N -0.700 5.700 14 C 0.222 3.778 15 C -0.545 4.545 16 H 0.080 0.920 17 C 0.080 3.920 18 N -0.891 5.891 19 Si 0.875 3.125 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.260 1.260 23 C -0.085 4.085 24 C -0.183 4.183 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.396 0.604 34 H 0.026 0.974 35 H 0.020 0.980 36 H 0.268 0.732 37 H 0.123 0.877 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.166 -8.919 12.763 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.233 6.233 3 C 0.071 3.929 4 C -0.155 4.155 5 C -0.086 4.086 6 C -0.226 4.226 7 S 0.180 5.820 8 C -0.243 4.243 9 H 0.127 0.873 10 C -0.186 4.186 11 C 0.277 3.723 12 O -0.405 6.405 13 N -0.349 5.349 14 C 0.100 3.900 15 C -0.583 4.583 16 H 0.098 0.902 17 C -0.125 4.125 18 N -0.528 5.528 19 Si 0.701 3.299 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.185 1.185 23 C -0.109 4.109 24 C -0.203 4.203 25 H 0.117 0.883 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.230 0.770 34 H 0.044 0.956 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.141 0.859 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.720 -9.042 12.077 19.104 hybrid contribution -1.876 -0.291 -0.732 2.035 sum 9.844 -9.333 11.345 17.684 Atomic orbital electron populations 1.23074 0.78295 1.03870 1.01709 1.86059 1.21468 1.26833 1.88911 1.18985 0.92333 0.84097 0.97517 1.20288 0.91317 0.98094 1.05781 1.20510 0.99508 0.89793 0.98836 1.21606 0.96163 0.97491 1.07363 1.85028 1.12414 0.94418 1.90105 1.23852 1.00232 1.00501 0.99709 0.87283 1.21516 1.02687 0.90957 1.03431 1.20225 0.82800 0.79754 0.89483 1.90729 1.60041 1.43878 1.45884 1.46132 1.13820 1.60080 1.14882 1.19516 0.94253 0.96835 0.79410 1.21057 0.96771 1.41754 0.98671 0.90223 1.24774 0.94531 0.94365 0.98784 1.69872 1.09475 1.44847 1.28598 0.86849 0.80510 0.79741 0.82818 1.19853 1.20776 1.18479 1.20955 0.92902 0.97927 0.99089 1.21148 1.00228 0.91862 1.07075 0.88267 0.92600 0.92345 0.84812 0.84856 0.90971 0.90004 0.90563 0.77028 0.95590 0.96175 0.92193 0.85874 0.85032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.02 10.50 -19.74 -0.21 -4.23 16 3 C 0.12 1.62 6.69 -39.23 -0.26 1.35 16 4 C -0.13 -1.73 9.98 -39.46 -0.39 -2.13 16 5 C -0.06 -0.84 9.78 -39.39 -0.39 -1.23 16 6 C -0.11 -1.71 6.04 -39.08 -0.24 -1.94 16 7 S -0.06 -0.92 20.56 -107.50 -2.21 -3.13 16 8 C -0.11 -1.54 2.42 -27.88 -0.07 -1.60 16 9 H 0.11 1.29 6.90 -51.93 -0.36 0.93 16 10 C -0.13 -1.44 9.18 37.16 0.34 -1.09 16 11 C 0.50 9.26 5.47 -10.99 -0.06 9.20 16 12 O -0.53 -12.01 16.05 5.55 0.09 -11.92 16 13 N -0.70 -13.67 5.55 -61.48 -0.34 -14.01 16 14 C 0.22 5.36 4.50 -5.20 -0.02 5.34 16 15 C -0.54 -14.59 9.83 -34.44 -0.34 -14.93 16 16 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 17 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 18 N -0.89 -26.03 13.96 55.43 0.77 -25.25 16 19 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 23 C -0.08 -1.29 8.83 -39.38 -0.35 -1.64 16 24 C -0.18 -2.58 9.03 -39.46 -0.36 -2.94 16 25 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 27 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 28 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 29 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.40 6.70 8.32 -40.82 -0.34 6.36 16 34 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 35 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.12 1.84 5.13 -52.49 -0.27 1.57 16 38 H 0.13 1.63 6.29 -52.49 -0.33 1.30 16 LS Contribution 333.41 15.07 5.02 5.02 Total: -1.00 -32.80 333.41 -7.75 -40.55 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -4.97 Total: 4.61 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -1.24 Total: -8.26 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.43 Total: -39.26 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.12 Total: -16.15 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.21 Total: -3.13 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.80 -7.75 -40.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340459849.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.545 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds