Wall clock time and date at job start Tue Mar 31 2020 07:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36001 * 117.00389 * 2 1 4 4 C 1.38715 * 119.98043 * 179.97438 * 3 2 1 5 5 C 1.38083 * 120.02659 * 179.97438 * 4 3 2 6 6 C 1.38916 * 119.97527 * 0.02562 * 5 4 3 7 7 S 1.76202 * 120.02286 * 179.97438 * 6 5 4 8 8 C 1.81404 * 102.99840 * 173.94053 * 7 6 5 9 9 H 1.08993 * 109.47404 * 51.22343 * 8 7 6 10 10 C 1.53005 * 109.47167 * 171.22664 * 8 7 6 11 11 C 1.50708 * 109.47146 * 291.22242 * 8 7 6 12 12 O 1.21288 * 119.99745 * 339.99914 * 11 8 7 13 13 N 1.34766 * 120.00230 * 160.00234 * 11 8 7 14 14 C 1.46499 * 120.00456 * 180.02562 * 13 11 8 15 15 C 1.50692 * 109.47558 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00003 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00101 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99974 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00089 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47308 * 89.99894 * 19 17 15 21 21 H 1.48502 * 109.47139 * 210.00088 * 19 17 15 22 22 H 1.48502 * 109.47159 * 329.99618 * 19 17 15 23 23 C 1.38919 * 119.95193 * 0.24973 * 6 5 4 24 24 C 1.38088 * 119.97301 * 359.49767 * 23 6 5 25 25 H 1.08995 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47143 * 300.00113 * 1 2 3 27 27 H 1.09005 * 109.46613 * 60.00234 * 1 2 3 28 28 H 1.08005 * 119.98154 * 359.96048 * 4 3 2 29 29 H 1.08004 * 120.00885 * 179.97438 * 5 4 3 30 30 H 1.08999 * 109.47417 * 60.77356 * 10 8 7 31 31 H 1.08993 * 109.46951 * 180.77591 * 10 8 7 32 32 H 1.09002 * 109.46854 * 300.77534 * 10 8 7 33 33 H 0.97000 * 120.00160 * 359.97438 * 13 11 8 34 34 H 1.09001 * 109.46942 * 300.00446 * 14 13 11 35 35 H 1.08997 * 109.46882 * 59.99463 * 14 13 11 36 36 H 0.96999 * 120.00291 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.01316 * 179.74794 * 23 6 5 38 38 H 1.07998 * 119.98495 * 180.22692 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4318 1.2838 0.0005 5 6 4.0597 2.5136 0.0000 6 6 3.3037 3.6789 -0.0005 7 16 4.1037 5.2489 -0.0005 8 6 2.7229 6.4104 -0.1879 9 1 1.9577 6.1883 0.5558 10 6 3.2287 7.8405 0.0122 11 6 2.1356 6.2740 -1.5691 12 8 2.7874 5.7677 -2.4579 13 7 0.8863 6.7147 -1.8167 14 6 0.3152 6.5816 -3.1592 15 6 -1.0819 7.1464 -3.1690 16 1 -1.5025 7.5625 -2.2655 17 6 -1.8231 7.1320 -4.3315 18 7 -3.0426 7.6244 -4.3400 19 14 -1.0959 6.4117 -5.8941 20 1 -1.4146 4.9631 -5.9665 21 1 -1.6728 7.1050 -7.0739 22 1 0.3778 6.5945 -5.8842 23 6 1.9164 3.6057 0.0047 24 6 1.2905 2.3748 0.0000 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 4.0194 0.3775 0.0016 29 1 5.1383 2.5693 0.0008 30 1 3.9841 8.0674 -0.7402 31 1 2.3966 8.5374 -0.0868 32 1 3.6660 7.9355 1.0061 33 1 0.3650 7.1193 -1.1058 34 1 0.9330 7.1270 -3.8726 35 1 0.2829 5.5283 -3.4375 36 1 -3.5642 7.6139 -5.1577 37 1 1.3277 4.5111 0.0084 38 1 0.2121 2.3176 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340459849.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:05 Heat of formation + Delta-G solvation = -71.872145 kcal Electronic energy + Delta-G solvation = -21119.913758 eV Core-core repulsion = 17860.104912 eV Total energy + Delta-G solvation = -3259.808846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.08618 -40.70577 -38.34773 -36.23483 -34.72430 -34.00904 -32.21654 -31.23688 -29.90768 -28.28087 -25.98747 -24.12746 -23.71320 -23.10148 -21.58671 -19.44678 -19.21655 -18.32846 -17.88900 -17.45262 -17.18477 -16.69628 -16.44802 -16.32917 -15.75279 -15.60451 -14.98669 -14.77962 -14.66905 -14.43543 -14.23920 -13.99235 -13.90582 -13.33881 -13.13756 -12.96747 -12.90815 -12.73822 -12.42577 -12.30409 -11.98175 -11.92749 -11.69785 -11.32995 -10.95483 -10.89049 -10.19370 -10.05760 -10.01745 -8.43262 -8.20033 -6.49903 0.15338 0.22473 0.43106 1.21530 1.28356 1.31839 1.43313 1.61903 2.23854 2.30636 2.32268 2.59792 2.92285 3.57619 3.68471 3.77680 3.79997 3.95692 4.14641 4.26451 4.33687 4.40803 4.53045 4.65221 4.67492 4.68490 4.76537 4.83978 4.97227 4.99400 5.09914 5.20409 5.21296 5.21840 5.42269 5.58073 6.03636 6.32584 6.50200 6.71376 7.10892 7.28934 8.71282 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012184 B = 0.005079 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.623363 B = 5511.111980 C = 7103.148388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.112 3.888 4 C -0.137 4.137 5 C -0.066 4.066 6 C -0.135 4.135 7 S -0.063 6.063 8 C -0.102 4.102 9 H 0.133 0.867 10 C -0.125 4.125 11 C 0.499 3.501 12 O -0.571 6.571 13 N -0.697 5.697 14 C 0.235 3.765 15 C -0.544 4.544 16 H 0.063 0.937 17 C 0.032 3.968 18 N -0.928 5.928 19 Si 0.930 3.070 20 H -0.267 1.267 21 H -0.272 1.272 22 H -0.263 1.263 23 C -0.103 4.103 24 C -0.194 4.194 25 H 0.125 0.875 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.157 0.843 29 H 0.153 0.847 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.410 0.590 34 H 0.012 0.988 35 H 0.008 0.992 36 H 0.273 0.727 37 H 0.119 0.881 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.064 -9.663 13.516 19.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.064 3.936 4 C -0.157 4.157 5 C -0.089 4.089 6 C -0.248 4.248 7 S 0.181 5.819 8 C -0.234 4.234 9 H 0.151 0.849 10 C -0.184 4.184 11 C 0.282 3.718 12 O -0.450 6.450 13 N -0.348 5.348 14 C 0.111 3.889 15 C -0.582 4.582 16 H 0.081 0.919 17 C -0.169 4.169 18 N -0.567 5.567 19 Si 0.754 3.246 20 H -0.192 1.192 21 H -0.197 1.197 22 H -0.187 1.187 23 C -0.127 4.127 24 C -0.215 4.215 25 H 0.143 0.857 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.175 0.825 29 H 0.171 0.829 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.245 0.755 34 H 0.030 0.970 35 H 0.026 0.974 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 12.613 -9.785 12.869 20.505 hybrid contribution -2.180 -0.110 -0.903 2.362 sum 10.433 -9.895 11.965 18.707 Atomic orbital electron populations 1.23335 0.76690 1.05730 1.01930 1.86052 1.23165 1.26254 1.88688 1.19186 0.92883 0.84376 0.97155 1.20618 0.91372 0.98874 1.04792 1.20814 1.00529 0.89500 0.98077 1.21834 0.96393 0.98293 1.08290 1.84966 1.12564 0.94380 1.89977 1.23863 1.00774 1.02188 0.96625 0.84895 1.21602 1.02878 0.89053 1.04838 1.20972 0.81772 0.77986 0.91030 1.90707 1.60936 1.45491 1.47875 1.45936 1.14589 1.60611 1.13619 1.19086 0.92750 0.95433 0.81614 1.21243 0.97834 1.41056 0.98066 0.91891 1.25508 0.94842 0.94809 1.01770 1.69963 1.10716 1.46296 1.29694 0.85965 0.79539 0.79343 0.79712 1.19206 1.19662 1.18706 1.21040 0.93247 0.98227 1.00181 1.21325 1.00975 0.91875 1.07290 0.85669 0.91585 0.92900 0.82525 0.82930 0.92065 0.88941 0.87563 0.75455 0.96974 0.97447 0.91808 0.86278 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.33 -7.78 10.50 -93.56 -0.98 -8.76 16 3 C 0.11 2.93 6.69 22.50 0.15 3.08 16 4 C -0.14 -3.30 9.98 22.35 0.22 -3.08 16 5 C -0.07 -1.67 9.78 22.40 0.22 -1.45 16 6 C -0.14 -3.94 6.04 22.60 0.14 -3.81 16 7 S -0.06 -1.73 20.56 -56.49 -1.16 -2.89 16 8 C -0.10 -2.68 2.42 29.85 0.07 -2.61 16 9 H 0.13 2.87 6.90 -2.39 -0.02 2.85 16 10 C -0.13 -2.53 9.18 71.98 0.66 -1.87 16 11 C 0.50 18.27 5.47 87.66 0.48 18.75 16 12 O -0.57 -25.88 16.05 -3.06 -0.05 -25.93 16 13 N -0.70 -26.91 5.55 -466.80 -2.59 -29.50 16 14 C 0.24 11.36 4.50 85.63 0.38 11.74 16 15 C -0.54 -29.32 9.83 25.60 0.25 -29.06 16 16 H 0.06 3.53 7.84 -2.91 -0.02 3.51 16 17 C 0.03 1.75 5.47 84.66 0.46 2.22 16 18 N -0.93 -54.48 13.96 21.45 0.30 -54.18 16 19 Si 0.93 43.80 27.47 68.60 1.88 45.69 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.26 -12.38 6.54 99.48 0.65 -11.73 16 23 C -0.10 -3.08 8.83 22.40 0.20 -2.88 16 24 C -0.19 -5.37 9.03 22.35 0.20 -5.17 16 25 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 27 H 0.05 0.96 7.66 -2.38 -0.02 0.94 16 28 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 29 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.41 13.53 8.32 -92.71 -0.77 12.76 16 34 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 35 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 36 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 37 H 0.12 3.51 5.13 -2.91 -0.01 3.49 16 38 H 0.14 3.44 6.29 -2.91 -0.02 3.42 16 Total: -1.00 -70.19 333.41 2.21 -67.98 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.25 Total: 20.33 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 4.55 Total: -12.73 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -2.29 Total: -83.68 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -1.03 Total: -34.69 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.69 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -1.16 Total: -2.89 kcal Total: -70.19 2.21 -67.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340459849.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.894 kcal (2) G-P(sol) polarization free energy of solvation -70.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds