Wall clock time and date at job start Tue Mar 31 2020 07:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46479 * 2 1 4 4 C 1.50694 * 109.47071 * 119.99406 * 2 1 3 5 5 O 1.21284 * 120.00033 * 120.00237 * 4 2 1 6 6 N 1.34773 * 120.00638 * 300.00197 * 4 2 1 7 7 C 1.46495 * 120.00431 * 179.97438 * 6 4 2 8 8 C 1.50700 * 109.47574 * 180.02562 * 7 6 4 9 9 H 1.08005 * 119.99629 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00515 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99803 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00312 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47067 * 89.99774 * 12 10 8 14 14 H 1.48496 * 109.47446 * 209.99851 * 12 10 8 15 15 H 1.48507 * 109.47035 * 330.00223 * 12 10 8 16 16 C 1.52994 * 109.47062 * 239.99881 * 2 1 3 17 17 H 1.09004 * 109.71753 * 185.54922 * 16 2 1 18 18 O 1.43022 * 109.67796 * 306.11662 * 16 2 1 19 19 C 1.43044 * 114.24644 * 171.74996 * 18 16 2 20 20 C 1.53435 * 109.07273 * 288.73085 * 19 18 16 21 21 C 1.51404 * 107.89457 * 47.50361 * 20 19 18 22 22 S 1.75512 * 126.27244 * 164.41935 * 21 20 19 23 23 C 1.75808 * 91.03735 * 180.02562 * 22 21 20 24 24 C 1.33078 * 109.61261 * 0.23887 * 23 22 21 25 25 C 1.34874 * 123.68152 * 344.44063 * 21 20 19 26 26 H 1.08994 * 109.47379 * 60.00240 * 1 2 3 27 27 H 1.08997 * 109.47035 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47384 * 300.00081 * 1 2 3 29 29 H 0.97000 * 119.99817 * 0.02562 * 6 4 2 30 30 H 1.09005 * 109.47450 * 299.99983 * 7 6 4 31 31 H 1.09002 * 109.47284 * 59.99811 * 7 6 4 32 32 H 0.97001 * 119.99718 * 180.02562 * 11 10 8 33 33 H 1.08996 * 109.53743 * 168.85248 * 19 18 16 34 34 H 1.09001 * 109.60726 * 48.65056 * 19 18 16 35 35 H 1.08998 * 109.77615 * 287.90209 * 20 19 18 36 36 H 1.09005 * 109.77757 * 167.09978 * 20 19 18 37 37 H 1.07998 * 125.19936 * 179.97438 * 23 22 21 38 38 H 1.07998 * 122.18573 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6963 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1946 -0.9406 3.6508 8 6 1.6919 -0.2305 4.8812 9 1 1.0714 0.6479 4.7821 10 6 2.0249 -0.7015 6.1335 11 7 2.7810 -1.7709 6.2542 12 14 1.4012 0.1783 7.6587 13 1 0.0933 -0.3977 8.0623 14 1 2.3791 0.0080 8.7632 15 1 1.2351 1.6241 7.3630 16 6 2.0400 -0.7212 -1.2492 17 1 3.1255 -0.8103 -1.2050 18 8 1.4521 -2.0227 -1.3276 19 6 1.7148 -2.7131 -2.5525 20 6 0.9214 -2.0463 -3.6840 21 6 1.1361 -0.5509 -3.5841 22 16 0.7827 0.6344 -4.8293 23 6 1.3460 1.9382 -3.7931 24 6 1.7537 1.4390 -2.6288 25 6 1.6397 0.0612 -2.4928 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.1488 0.5386 2.5436 30 1 1.8309 -1.9682 3.6507 31 1 3.2846 -0.9411 3.6509 32 1 3.0150 -2.1024 7.1353 33 1 1.4080 -3.7546 -2.4569 34 1 2.7802 -2.6662 -2.7776 35 1 -0.1388 -2.2747 -3.5753 36 1 1.2801 -2.4067 -4.6481 37 1 1.3630 2.9840 -4.0620 38 1 2.1406 2.0650 -1.8384 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351590288.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:41 Heat of formation + Delta-G solvation = -81.169670 kcal Electronic energy + Delta-G solvation = -21536.426911 eV Core-core repulsion = 18276.214894 eV Total energy + Delta-G solvation = -3260.212017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.41718 -40.01527 -37.44442 -36.11737 -35.13877 -34.23196 -32.81782 -30.01464 -29.03223 -26.98733 -25.65202 -24.92241 -23.33756 -22.67630 -21.06040 -19.19328 -18.94728 -18.31781 -17.83592 -17.23923 -17.07676 -16.45825 -16.09917 -15.82957 -15.61758 -15.46160 -14.71110 -14.59319 -14.40073 -14.08733 -13.99394 -13.65064 -13.28112 -13.21169 -13.02287 -12.89549 -12.82345 -12.70447 -12.38352 -12.20743 -11.99152 -11.95770 -11.58582 -11.46457 -10.78956 -10.63281 -10.50647 -9.78422 -9.48809 -9.26624 -8.27806 -6.44492 0.02611 0.67224 1.04676 1.43761 1.46450 1.57610 1.66685 1.82055 2.33420 2.59611 2.79859 3.06944 3.59883 3.68041 3.76316 3.99211 4.07440 4.10251 4.25479 4.38234 4.41489 4.51436 4.61072 4.76923 4.80812 4.88129 4.94702 4.96963 5.13289 5.17162 5.26021 5.30258 5.39801 5.49947 5.51515 5.72388 5.86750 6.25265 6.66753 6.94449 7.24896 7.53600 8.84528 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.032200 B = 0.003272 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.348795 B = 8555.499669 C = 9095.548430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.087 4.087 3 H 0.135 0.865 4 C 0.501 3.499 5 O -0.592 6.592 6 N -0.707 5.707 7 C 0.268 3.732 8 C -0.555 4.555 9 H 0.084 0.916 10 C 0.003 3.997 11 N -0.932 5.932 12 Si 0.986 3.014 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.254 1.254 16 C 0.177 3.823 17 H 0.056 0.944 18 O -0.384 6.384 19 C 0.057 3.943 20 C -0.076 4.076 21 C -0.191 4.191 22 S 0.125 5.875 23 C -0.210 4.210 24 C -0.133 4.133 25 C -0.146 4.146 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.407 0.593 30 H -0.016 1.016 31 H -0.013 1.013 32 H 0.268 0.732 33 H 0.112 0.888 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.192 0.808 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.331 8.301 -23.697 25.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.108 4.108 3 H 0.153 0.847 4 C 0.288 3.712 5 O -0.473 6.473 6 N -0.357 5.357 7 C 0.145 3.855 8 C -0.593 4.593 9 H 0.102 0.898 10 C -0.197 4.197 11 N -0.570 5.570 12 Si 0.808 3.192 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.178 1.178 16 C 0.117 3.883 17 H 0.074 0.926 18 O -0.302 6.302 19 C -0.021 4.021 20 C -0.115 4.115 21 C -0.308 4.308 22 S 0.391 5.609 23 C -0.345 4.345 24 C -0.163 4.163 25 C -0.159 4.159 26 H 0.100 0.900 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.243 0.757 30 H 0.002 0.998 31 H 0.005 0.995 32 H 0.077 0.923 33 H 0.130 0.870 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.126 0.874 37 H 0.209 0.791 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.468 7.392 -24.994 26.855 hybrid contribution 0.724 0.277 2.296 2.423 sum -5.744 7.669 -22.698 24.637 Atomic orbital electron populations 1.21574 0.90892 1.02467 1.03377 1.21375 0.99603 1.00474 0.89385 0.84735 1.21228 0.79861 0.84469 0.85664 1.90640 1.40568 1.28552 1.87493 1.46165 1.52348 1.31645 1.05544 1.18510 0.92812 0.91581 0.82606 1.21626 1.33221 1.13695 0.90743 0.89767 1.26085 0.94734 0.95654 1.03205 1.70150 1.37242 1.24457 1.25199 0.85146 0.77859 0.79216 0.76931 1.19657 1.20978 1.17765 1.20525 0.95682 0.81995 0.90111 0.92585 1.88043 1.75106 1.28914 1.38180 1.22816 0.98966 0.96906 0.83411 1.21005 1.02468 0.87521 1.00527 1.24999 1.07395 1.00706 0.97742 1.83925 1.63528 0.96386 1.17033 1.25752 1.07446 1.03846 0.97418 1.20035 1.03396 0.93472 0.99395 1.20117 1.04767 0.94736 0.96286 0.90018 0.93422 0.90938 0.75732 0.99848 0.99513 0.92286 0.86988 0.92981 0.88806 0.87402 0.79100 0.82928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.70 71.98 0.63 -2.61 16 2 C -0.09 -2.56 2.38 -11.54 -0.03 -2.59 16 3 H 0.14 3.07 7.07 -2.38 -0.02 3.05 16 4 C 0.50 21.05 7.05 87.66 0.62 21.67 16 5 O -0.59 -30.73 15.47 9.39 0.15 -30.58 16 6 N -0.71 -30.91 5.44 -466.80 -2.54 -33.45 16 7 C 0.27 15.10 5.43 85.63 0.46 15.57 16 8 C -0.56 -30.66 9.28 25.60 0.24 -30.42 16 9 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 10 C 0.00 0.15 5.46 84.65 0.46 0.61 16 11 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 12 Si 0.99 42.68 29.54 68.60 2.03 44.71 16 13 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 14 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 15 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 16 C 0.18 5.25 2.20 30.36 0.07 5.32 16 17 H 0.06 1.87 7.94 -2.38 -0.02 1.85 16 18 O -0.38 -12.47 8.77 -136.54 -1.20 -13.67 16 19 C 0.06 1.34 6.83 72.13 0.49 1.84 16 20 C -0.08 -1.38 6.55 30.22 0.20 -1.18 16 21 C -0.19 -3.95 6.44 25.14 0.16 -3.79 16 22 S 0.13 1.99 23.32 -56.49 -1.32 0.67 16 23 C -0.21 -3.17 11.21 66.66 0.75 -2.42 16 24 C -0.13 -2.48 9.44 21.28 0.20 -2.28 16 25 C -0.15 -3.38 4.44 -19.97 -0.09 -3.47 16 26 H 0.08 1.77 7.38 -2.39 -0.02 1.76 16 27 H 0.05 1.44 7.54 -2.39 -0.02 1.42 16 28 H 0.07 1.69 7.56 -2.38 -0.02 1.67 16 29 H 0.41 14.67 7.74 -92.71 -0.72 13.95 16 30 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 31 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 32 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 33 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.05 1.22 8.09 -2.39 -0.02 1.20 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 38 H 0.15 2.37 7.28 -2.91 -0.02 2.35 16 Total: -1.00 -75.32 327.83 1.92 -73.40 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.36 Total: 19.43 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: 4.16 Total: -3.75 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -2.25 Total: -90.22 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -1.05 Total: -44.25 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -1.32 Total: 0.67 kcal Total: -75.32 1.92 -73.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351590288.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.767 kcal (2) G-P(sol) polarization free energy of solvation -75.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds