Wall clock time and date at job start Tue Mar 31 2020 07:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47030 * 2 1 4 4 C 1.50690 * 109.47015 * 239.99693 * 2 1 3 5 5 O 1.21285 * 120.00336 * 239.99923 * 4 2 1 6 6 N 1.34777 * 120.00221 * 60.00105 * 4 2 1 7 7 C 1.46500 * 120.00218 * 179.97438 * 6 4 2 8 8 C 1.50702 * 109.47243 * 180.02562 * 7 6 4 9 9 H 1.07997 * 119.99533 * 359.97438 * 8 7 6 10 10 C 1.37872 * 119.99873 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00201 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99925 * 179.72327 * 10 8 7 13 13 H 1.48500 * 109.47052 * 59.99907 * 12 10 8 14 14 H 1.48499 * 109.47563 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47126 * 299.99972 * 12 10 8 16 16 C 1.52999 * 109.46934 * 119.99565 * 2 1 3 17 17 H 1.09001 * 109.69262 * 304.72683 * 16 2 1 18 18 O 1.43026 * 109.68811 * 65.26826 * 16 2 1 19 19 C 1.43044 * 114.24496 * 171.77686 * 18 16 2 20 20 C 1.53437 * 109.07933 * 288.73494 * 19 18 16 21 21 C 1.51407 * 107.89907 * 47.46575 * 20 19 18 22 22 S 1.75514 * 126.27156 * 164.51009 * 21 20 19 23 23 C 1.75811 * 91.03541 * 179.97438 * 22 21 20 24 24 C 1.33060 * 109.61333 * 359.97438 * 23 22 21 25 25 C 1.34874 * 123.68454 * 344.47875 * 21 20 19 26 26 H 1.09007 * 109.47455 * 294.72542 * 1 2 3 27 27 H 1.09000 * 109.47419 * 54.72644 * 1 2 3 28 28 H 1.09001 * 109.47427 * 174.72815 * 1 2 3 29 29 H 0.96999 * 120.00137 * 0.02562 * 6 4 2 30 30 H 1.08999 * 109.47396 * 59.99999 * 7 6 4 31 31 H 1.09003 * 109.47227 * 299.99672 * 7 6 4 32 32 H 0.97005 * 119.99770 * 180.02562 * 11 10 8 33 33 H 1.08996 * 109.53546 * 48.61784 * 19 18 16 34 34 H 1.08998 * 109.53491 * 168.85698 * 19 18 16 35 35 H 1.09001 * 109.77711 * 167.06064 * 20 19 18 36 36 H 1.08996 * 109.77800 * 287.86248 * 20 19 18 37 37 H 1.07998 * 125.19029 * 180.02562 * 23 22 21 38 38 H 1.08003 * 122.18574 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.1955 -0.9404 -3.6506 8 6 1.6936 -0.2298 -4.8812 9 1 1.0723 0.6480 -4.7820 10 6 2.0276 -0.7003 -6.1333 11 7 2.7838 -1.7695 -6.2540 12 14 1.3991 0.1761 -7.6586 13 1 1.8874 1.5785 -7.6603 14 1 1.8956 -0.5229 -8.8711 15 1 -0.0859 0.1690 -7.6571 16 6 2.0400 -0.7212 1.2493 17 1 1.6112 -0.2612 2.1397 18 8 1.6694 -2.1015 1.1939 19 6 2.2536 -2.9082 2.2206 20 6 3.7526 -3.0726 1.9373 21 6 4.3188 -1.7049 1.6191 22 16 6.0176 -1.2642 1.5953 23 6 5.6153 0.3892 1.1535 24 6 4.2946 0.5157 1.0521 25 6 3.5593 -0.6349 1.3073 26 1 -0.3634 0.4299 0.9335 27 1 -0.3634 0.5934 -0.8390 28 1 -0.3634 -1.0233 -0.0944 29 1 1.1494 0.5388 -2.5436 30 1 1.8326 -1.9682 -3.6508 31 1 3.2855 -0.9399 -3.6505 32 1 3.0190 -2.1003 -7.1350 33 1 2.1163 -2.4236 3.1872 34 1 1.7751 -3.8874 2.2312 35 1 4.2511 -3.4829 2.8155 36 1 3.8962 -3.7383 1.0862 37 1 6.3309 1.1811 0.9887 38 1 3.8248 1.4519 0.7889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351590290.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:46 Heat of formation + Delta-G solvation = -55.034551 kcal Electronic energy + Delta-G solvation = -22039.971100 eV Core-core repulsion = 18780.892387 eV Total energy + Delta-G solvation = -3259.078713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.14054 -38.18466 -36.32776 -34.05812 -33.83152 -32.22859 -31.63312 -28.87310 -27.10367 -25.78108 -24.03602 -23.41321 -21.68672 -21.63708 -19.30294 -18.36050 -17.24514 -17.23982 -16.24569 -15.51893 -15.35110 -14.79820 -14.56482 -14.55534 -14.28781 -13.99384 -13.32708 -13.23169 -12.99942 -12.78243 -12.30215 -12.07657 -11.94676 -11.80910 -11.78049 -11.49245 -11.24309 -11.00414 -10.97301 -10.84033 -10.78222 -10.45706 -10.24802 -9.43372 -9.33552 -8.75350 -8.65289 -8.36755 -8.10682 -7.69971 -6.10899 -4.17370 1.17030 1.77975 2.13132 2.82607 3.28056 3.32701 3.34261 3.59752 3.90314 4.18605 4.43008 4.72588 4.79309 4.91403 5.14569 5.19708 5.24396 5.24999 5.33381 5.38671 5.43289 5.60305 5.65421 5.75468 5.81287 5.91558 6.01546 6.12004 6.24382 6.37224 6.48179 6.62357 7.34163 7.42460 7.59983 7.62609 7.76459 8.05241 8.77220 8.89001 9.30239 9.50443 10.99311 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019339 B = 0.004304 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.525767 B = 6503.500473 C = 7016.098085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 H 0.101 0.899 4 C 0.505 3.495 5 O -0.527 6.527 6 N -0.718 5.718 7 C 0.254 3.746 8 C -0.541 4.541 9 H 0.061 0.939 10 C 0.063 3.937 11 N -0.886 5.886 12 Si 0.902 3.098 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.178 3.822 17 H 0.072 0.928 18 O -0.350 6.350 19 C 0.071 3.929 20 C -0.078 4.078 21 C -0.155 4.155 22 S 0.089 5.911 23 C -0.218 4.218 24 C -0.117 4.117 25 C -0.127 4.127 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.386 0.614 30 H 0.024 0.976 31 H 0.023 0.977 32 H 0.265 0.735 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.162 0.838 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.189 3.590 19.636 19.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 H 0.119 0.881 4 C 0.289 3.711 5 O -0.403 6.403 6 N -0.368 5.368 7 C 0.133 3.867 8 C -0.580 4.580 9 H 0.079 0.921 10 C -0.140 4.140 11 N -0.524 5.524 12 Si 0.729 3.271 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.201 1.201 16 C 0.117 3.883 17 H 0.089 0.911 18 O -0.268 6.268 19 C -0.008 4.008 20 C -0.117 4.117 21 C -0.272 4.272 22 S 0.354 5.646 23 C -0.353 4.353 24 C -0.148 4.148 25 C -0.139 4.139 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.218 0.782 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.180 0.820 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.088 1.894 19.660 19.861 hybrid contribution -1.428 1.782 -1.247 2.602 sum 0.660 3.676 18.413 18.788 Atomic orbital electron populations 1.21708 0.92556 1.03424 1.02014 1.21487 0.97888 0.99879 0.93462 0.88142 1.20054 0.81447 0.85319 0.84321 1.90675 1.37495 1.25746 1.86421 1.46414 1.52442 1.31370 1.06557 1.18997 0.94994 0.92752 0.79922 1.21211 1.32972 1.13065 0.90705 0.92080 1.24945 0.94909 0.94987 0.99165 1.69975 1.35803 1.22472 1.24144 0.86505 0.79173 0.79574 0.81818 1.20125 1.21107 1.20083 1.20696 0.87835 0.83405 0.96319 0.91074 1.88102 1.68673 1.18047 1.51972 1.22534 0.91839 0.95973 0.90455 1.20919 0.96468 0.92074 1.02282 1.24521 0.95253 0.99280 1.08188 1.83883 1.06304 1.05247 1.69135 1.25263 0.99312 0.99547 1.11215 1.19817 0.93111 0.99104 1.02727 1.19987 0.97247 0.92917 1.03720 0.92126 0.91785 0.91296 0.78151 0.95800 0.95933 0.92494 0.93286 0.88345 0.90305 0.88973 0.82046 0.84715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.90 37.16 0.33 -1.41 16 2 C -0.11 -1.55 2.38 -91.77 -0.22 -1.77 16 3 H 0.10 1.25 7.10 -51.93 -0.37 0.88 16 4 C 0.51 10.34 6.74 -10.99 -0.07 10.27 16 5 O -0.53 -12.84 14.06 -15.03 -0.21 -13.05 16 6 N -0.72 -15.60 5.45 -61.47 -0.34 -15.94 16 7 C 0.25 6.94 5.43 -5.19 -0.03 6.92 16 8 C -0.54 -15.00 9.28 -34.44 -0.32 -15.32 16 9 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 10 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 11 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 12 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 C 0.18 2.56 2.58 -27.10 -0.07 2.49 16 17 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 18 O -0.35 -5.58 8.57 -55.82 -0.48 -6.06 16 19 C 0.07 0.87 6.83 37.38 0.26 1.12 16 20 C -0.08 -1.03 6.55 -27.31 -0.18 -1.20 16 21 C -0.16 -2.35 6.39 -35.15 -0.22 -2.58 16 22 S 0.09 1.22 23.32 -107.50 -2.51 -1.29 16 23 C -0.22 -2.93 11.21 28.93 0.32 -2.61 16 24 C -0.12 -1.66 9.45 -41.13 -0.39 -2.05 16 25 C -0.13 -1.94 3.99 -104.78 -0.42 -2.35 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.75 7.72 -51.93 -0.40 0.35 16 28 H 0.07 0.98 7.98 -51.93 -0.41 0.57 16 29 H 0.39 7.24 7.84 -40.82 -0.32 6.92 16 30 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.14 1.63 7.28 -52.48 -0.38 1.24 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -34.10 327.68 -9.21 -43.31 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.22 Total: 4.68 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -1.11 Total: -6.80 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.40 Total: -41.88 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.69 Total: -19.12 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.51 Total: -1.29 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.10 -9.21 -43.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351590290.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.725 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds