Wall clock time and date at job start Tue Mar 31 2020 07:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47030 * 2 1 4 4 C 1.50690 * 109.47015 * 239.99693 * 2 1 3 5 5 O 1.21285 * 120.00336 * 239.99923 * 4 2 1 6 6 N 1.34777 * 120.00221 * 60.00105 * 4 2 1 7 7 C 1.46500 * 120.00218 * 179.97438 * 6 4 2 8 8 C 1.50702 * 109.47243 * 180.02562 * 7 6 4 9 9 H 1.07997 * 119.99533 * 359.97438 * 8 7 6 10 10 C 1.37872 * 119.99873 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00201 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99925 * 179.72327 * 10 8 7 13 13 H 1.48500 * 109.47052 * 59.99907 * 12 10 8 14 14 H 1.48499 * 109.47563 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47126 * 299.99972 * 12 10 8 16 16 C 1.52999 * 109.46934 * 119.99565 * 2 1 3 17 17 H 1.09001 * 109.69262 * 304.72683 * 16 2 1 18 18 O 1.43026 * 109.68811 * 65.26826 * 16 2 1 19 19 C 1.43044 * 114.24496 * 171.77686 * 18 16 2 20 20 C 1.53437 * 109.07933 * 288.73494 * 19 18 16 21 21 C 1.51407 * 107.89907 * 47.46575 * 20 19 18 22 22 S 1.75514 * 126.27156 * 164.51009 * 21 20 19 23 23 C 1.75811 * 91.03541 * 179.97438 * 22 21 20 24 24 C 1.33060 * 109.61333 * 359.97438 * 23 22 21 25 25 C 1.34874 * 123.68454 * 344.47875 * 21 20 19 26 26 H 1.09007 * 109.47455 * 294.72542 * 1 2 3 27 27 H 1.09000 * 109.47419 * 54.72644 * 1 2 3 28 28 H 1.09001 * 109.47427 * 174.72815 * 1 2 3 29 29 H 0.96999 * 120.00137 * 0.02562 * 6 4 2 30 30 H 1.08999 * 109.47396 * 59.99999 * 7 6 4 31 31 H 1.09003 * 109.47227 * 299.99672 * 7 6 4 32 32 H 0.97005 * 119.99770 * 180.02562 * 11 10 8 33 33 H 1.08996 * 109.53546 * 48.61784 * 19 18 16 34 34 H 1.08998 * 109.53491 * 168.85698 * 19 18 16 35 35 H 1.09001 * 109.77711 * 167.06064 * 20 19 18 36 36 H 1.08996 * 109.77800 * 287.86248 * 20 19 18 37 37 H 1.07998 * 125.19029 * 180.02562 * 23 22 21 38 38 H 1.08003 * 122.18574 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.1955 -0.9404 -3.6506 8 6 1.6936 -0.2298 -4.8812 9 1 1.0723 0.6480 -4.7820 10 6 2.0276 -0.7003 -6.1333 11 7 2.7838 -1.7695 -6.2540 12 14 1.3991 0.1761 -7.6586 13 1 1.8874 1.5785 -7.6603 14 1 1.8956 -0.5229 -8.8711 15 1 -0.0859 0.1690 -7.6571 16 6 2.0400 -0.7212 1.2493 17 1 1.6112 -0.2612 2.1397 18 8 1.6694 -2.1015 1.1939 19 6 2.2536 -2.9082 2.2206 20 6 3.7526 -3.0726 1.9373 21 6 4.3188 -1.7049 1.6191 22 16 6.0176 -1.2642 1.5953 23 6 5.6153 0.3892 1.1535 24 6 4.2946 0.5157 1.0521 25 6 3.5593 -0.6349 1.3073 26 1 -0.3634 0.4299 0.9335 27 1 -0.3634 0.5934 -0.8390 28 1 -0.3634 -1.0233 -0.0944 29 1 1.1494 0.5388 -2.5436 30 1 1.8326 -1.9682 -3.6508 31 1 3.2855 -0.9399 -3.6505 32 1 3.0190 -2.1003 -7.1350 33 1 2.1163 -2.4236 3.1872 34 1 1.7751 -3.8874 2.2312 35 1 4.2511 -3.4829 2.8155 36 1 3.8962 -3.7383 1.0862 37 1 6.3309 1.1811 0.9887 38 1 3.8248 1.4519 0.7889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351590290.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:46 Heat of formation + Delta-G solvation = -77.703805 kcal Electronic energy + Delta-G solvation = -22040.954113 eV Core-core repulsion = 18780.892387 eV Total energy + Delta-G solvation = -3260.061726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.36856 -39.69911 -37.38163 -36.02436 -35.11353 -34.18048 -32.76934 -30.01720 -29.07591 -26.82077 -25.36954 -24.92418 -23.28555 -22.70980 -20.94212 -19.56132 -18.73680 -18.30217 -17.88663 -17.05211 -16.90388 -16.28363 -15.98720 -15.76068 -15.55112 -15.50594 -14.59304 -14.49663 -14.28272 -14.12971 -13.96798 -13.63782 -13.30742 -13.00304 -12.92864 -12.86780 -12.74989 -12.66585 -12.44246 -12.22426 -12.00849 -11.90233 -11.50503 -11.46338 -10.77154 -10.54631 -10.34816 -9.68347 -9.44185 -9.20431 -8.27938 -6.44795 0.09350 0.73062 1.07419 1.42239 1.46870 1.54937 1.75461 2.00734 2.34294 2.68475 2.88414 3.06592 3.68952 3.74469 3.85166 4.01181 4.15825 4.22277 4.33470 4.39174 4.41272 4.50008 4.63585 4.75733 4.84956 4.95141 4.97421 5.03989 5.17007 5.20241 5.27682 5.37875 5.43839 5.53707 5.57638 5.78522 5.89317 6.34830 6.67556 7.06654 7.25513 7.68508 8.84194 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019339 B = 0.004304 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.525767 B = 6503.500473 C = 7016.098085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.132 0.868 4 C 0.499 3.501 5 O -0.571 6.571 6 N -0.715 5.715 7 C 0.275 3.725 8 C -0.555 4.555 9 H 0.083 0.917 10 C 0.003 3.997 11 N -0.933 5.933 12 Si 0.985 3.015 13 H -0.261 1.261 14 H -0.286 1.286 15 H -0.261 1.261 16 C 0.173 3.827 17 H 0.109 0.891 18 O -0.382 6.382 19 C 0.067 3.933 20 C -0.079 4.079 21 C -0.183 4.183 22 S 0.081 5.919 23 C -0.222 4.222 24 C -0.133 4.133 25 C -0.140 4.140 26 H 0.099 0.901 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.404 0.596 30 H -0.021 1.021 31 H -0.021 1.021 32 H 0.268 0.732 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.185 0.815 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.387 6.207 20.472 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 H 0.149 0.851 4 C 0.285 3.715 5 O -0.450 6.450 6 N -0.366 5.366 7 C 0.151 3.849 8 C -0.592 4.592 9 H 0.101 0.899 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.808 3.192 13 H -0.185 1.185 14 H -0.211 1.211 15 H -0.186 1.186 16 C 0.113 3.887 17 H 0.127 0.873 18 O -0.301 6.301 19 C -0.011 4.011 20 C -0.118 4.118 21 C -0.300 4.300 22 S 0.347 5.653 23 C -0.357 4.357 24 C -0.163 4.163 25 C -0.153 4.153 26 H 0.118 0.882 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.239 0.761 30 H -0.003 1.003 31 H -0.003 1.003 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.203 0.797 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.487 4.543 20.538 21.041 hybrid contribution -0.874 0.906 -1.454 1.923 sum -0.388 5.449 19.084 19.851 Atomic orbital electron populations 1.21722 0.90430 1.02531 1.04519 1.21549 0.99441 1.00484 0.90055 0.85063 1.21196 0.80110 0.84820 0.85344 1.90660 1.39273 1.27892 1.87141 1.46181 1.52953 1.31780 1.05679 1.18369 0.92268 0.91362 0.82859 1.21607 1.33136 1.13654 0.90834 0.89851 1.26091 0.94747 0.95603 1.03231 1.70153 1.37363 1.24505 1.25185 0.85212 0.79035 0.78496 0.76500 1.18541 1.21148 1.18568 1.20954 0.87404 0.83122 0.97196 0.87337 1.88055 1.69196 1.19163 1.53647 1.22749 0.90887 0.96588 0.90837 1.20963 0.97756 0.90942 1.02138 1.24886 0.95857 1.00196 1.09056 1.83829 1.06188 1.06056 1.69232 1.25655 0.99860 0.99676 1.10465 1.20123 0.93425 0.99776 1.02989 1.20332 0.98138 0.93315 1.03467 0.88242 0.90945 0.93613 0.76111 1.00283 1.00317 0.92357 0.90510 0.87074 0.87631 0.92025 0.79731 0.82565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.90 71.98 0.64 -2.30 16 2 C -0.09 -2.55 2.38 -11.54 -0.03 -2.58 16 3 H 0.13 2.77 7.10 -2.39 -0.02 2.75 16 4 C 0.50 20.52 6.74 87.65 0.59 21.11 16 5 O -0.57 -28.94 14.06 16.64 0.23 -28.71 16 6 N -0.71 -31.32 5.45 -466.79 -2.54 -33.87 16 7 C 0.27 15.67 5.43 85.63 0.46 16.14 16 8 C -0.55 -30.96 9.28 25.60 0.24 -30.72 16 9 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 10 C 0.00 0.14 5.46 84.65 0.46 0.61 16 11 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16 12 Si 0.98 43.04 29.54 68.60 2.03 45.07 16 13 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 14 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 15 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 16 C 0.17 4.60 2.58 30.36 0.08 4.68 16 17 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 18 O -0.38 -11.89 8.57 -129.30 -1.11 -12.99 16 19 C 0.07 1.59 6.83 72.13 0.49 2.08 16 20 C -0.08 -2.09 6.55 30.22 0.20 -1.89 16 21 C -0.18 -5.52 6.39 25.14 0.16 -5.36 16 22 S 0.08 2.23 23.32 -56.49 -1.32 0.91 16 23 C -0.22 -5.71 11.21 66.66 0.75 -4.97 16 24 C -0.13 -3.55 9.45 21.27 0.20 -3.35 16 25 C -0.14 -4.12 3.99 -19.97 -0.08 -4.20 16 26 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.07 1.46 7.72 -2.39 -0.02 1.44 16 28 H 0.04 1.22 7.98 -2.39 -0.02 1.21 16 29 H 0.40 14.65 7.84 -92.71 -0.73 13.92 16 30 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16 31 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 32 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 33 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 34 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.19 3.69 8.06 -2.91 -0.02 3.66 16 38 H 0.16 3.33 7.28 -2.91 -0.02 3.30 16 Total: -1.00 -78.32 327.68 2.09 -76.24 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.35 Total: 21.71 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 4.17 Total: -10.75 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -2.26 Total: -91.47 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -0.87 Total: -41.70 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -1.32 Total: 0.91 kcal Total: -78.32 2.09 -76.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351590290.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.468 kcal (2) G-P(sol) polarization free energy of solvation -78.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds