Wall clock time and date at job start Tue Mar 31 2020 07:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47096 * 2 1 4 4 C 1.50701 * 109.46812 * 119.99815 * 2 1 3 5 5 O 1.21282 * 120.00171 * 120.00002 * 4 2 1 6 6 N 1.34779 * 119.99910 * 300.00292 * 4 2 1 7 7 C 1.46500 * 119.99897 * 179.97438 * 6 4 2 8 8 C 1.50700 * 109.47311 * 179.97438 * 7 6 4 9 9 H 1.07996 * 119.99822 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00003 * 179.72133 * 8 7 6 11 11 N 1.31514 * 120.00180 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99780 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47066 * 60.00464 * 12 10 8 14 14 H 1.48501 * 109.47259 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47488 * 300.00776 * 12 10 8 16 16 C 1.52995 * 109.47328 * 239.99804 * 2 1 3 17 17 H 1.08994 * 109.68934 * 54.30408 * 16 2 1 18 18 O 1.43016 * 109.69270 * 293.71968 * 16 2 1 19 19 C 1.43060 * 114.23769 * 188.21276 * 18 16 2 20 20 C 1.53438 * 109.07117 * 71.28170 * 19 18 16 21 21 C 1.51407 * 107.90201 * 312.53115 * 20 19 18 22 22 S 1.75508 * 126.27370 * 195.53320 * 21 20 19 23 23 C 1.75808 * 91.03582 * 179.97438 * 22 21 20 24 24 C 1.33066 * 109.61541 * 0.02562 * 23 22 21 25 25 C 1.34874 * 123.67846 * 15.50466 * 21 20 19 26 26 H 1.09001 * 109.46549 * 65.27853 * 1 2 3 27 27 H 1.08994 * 109.46853 * 185.27450 * 1 2 3 28 28 H 1.08996 * 109.47042 * 305.28092 * 1 2 3 29 29 H 0.96994 * 120.00439 * 359.97438 * 6 4 2 30 30 H 1.09004 * 109.47420 * 59.99890 * 7 6 4 31 31 H 1.09001 * 109.47203 * 299.99965 * 7 6 4 32 32 H 0.96994 * 119.99584 * 179.97438 * 11 10 8 33 33 H 1.08997 * 109.54771 * 311.39863 * 19 18 16 34 34 H 1.09005 * 109.59454 * 191.19269 * 19 18 16 35 35 H 1.08999 * 109.77527 * 192.92847 * 20 19 18 36 36 H 1.09003 * 109.81730 * 72.15270 * 20 19 18 37 37 H 1.07999 * 125.19169 * 179.97438 * 23 22 21 38 38 H 1.07995 * 122.18697 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 2.1944 -0.9408 3.6508 8 6 1.6926 -0.2300 4.8813 9 1 1.0720 0.6483 4.7821 10 6 2.0206 -0.7046 6.1336 11 7 2.7717 -1.7773 6.2543 12 14 1.3980 0.1761 7.6587 13 1 -0.0871 0.1824 7.6551 14 1 1.8874 -0.5277 8.8713 15 1 1.8988 1.5741 7.6623 16 6 2.0401 -0.7213 -1.2492 17 1 1.5979 -0.2724 -2.1386 18 8 1.6900 -2.1063 -1.1826 19 6 2.2774 -2.9105 -2.2097 20 6 3.7809 -3.0517 -1.9376 21 6 4.3299 -1.6742 -1.6319 22 16 6.0221 -1.2088 -1.6255 23 6 5.5996 0.4414 -1.1906 24 6 4.2780 0.5494 -1.0786 25 6 3.5574 -0.6134 -1.3203 26 1 -0.3632 0.4298 -0.9335 27 1 -0.3633 -1.0233 0.0945 28 1 -0.3633 0.5935 0.8389 29 1 1.1492 0.5389 2.5436 30 1 3.2844 -0.9413 3.6511 31 1 1.8306 -1.9683 3.6507 32 1 3.0027 -2.1109 7.1353 33 1 2.1254 -2.4337 -3.1779 34 1 1.8132 -3.8968 -2.2121 35 1 4.2781 -3.4600 -2.8175 36 1 3.9417 -3.7105 -1.0843 37 1 6.3050 1.2446 -1.0370 38 1 3.7970 1.4803 -0.8172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351590291.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:48 Heat of formation + Delta-G solvation = -55.070142 kcal Electronic energy + Delta-G solvation = -22032.845801 eV Core-core repulsion = 18773.765545 eV Total energy + Delta-G solvation = -3259.080256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.13767 -38.18618 -36.32867 -34.05723 -33.83200 -32.22865 -31.63466 -28.87526 -27.10376 -25.77849 -24.04351 -23.41168 -21.69129 -21.63701 -19.30132 -18.36080 -17.24931 -17.24458 -16.24393 -15.51217 -15.35180 -14.80153 -14.56407 -14.55646 -14.28684 -13.99328 -13.32895 -13.23080 -13.00284 -12.78712 -12.30365 -12.07668 -11.94885 -11.80665 -11.78666 -11.49461 -11.24173 -11.00392 -10.97547 -10.84056 -10.78206 -10.45815 -10.24732 -9.43193 -9.33486 -8.74657 -8.65179 -8.37551 -8.11730 -7.69866 -6.10865 -4.17285 1.16257 1.77194 2.12409 2.81807 3.28084 3.32717 3.34300 3.59956 3.90441 4.18760 4.43099 4.72399 4.78944 4.91296 5.14554 5.19521 5.24321 5.24971 5.33188 5.38481 5.43174 5.60195 5.65116 5.75545 5.81254 5.91526 6.01442 6.11873 6.23712 6.36976 6.47590 6.61705 7.34458 7.42622 7.60117 7.62704 7.76601 8.05339 8.77353 8.89145 9.30420 9.50518 10.99385 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019364 B = 0.004289 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.616740 B = 6527.487934 C = 7026.038675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 H 0.101 0.899 4 C 0.505 3.495 5 O -0.527 6.527 6 N -0.719 5.719 7 C 0.254 3.746 8 C -0.541 4.541 9 H 0.061 0.939 10 C 0.063 3.937 11 N -0.886 5.886 12 Si 0.902 3.098 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.178 3.822 17 H 0.072 0.928 18 O -0.349 6.349 19 C 0.071 3.929 20 C -0.078 4.078 21 C -0.155 4.155 22 S 0.089 5.911 23 C -0.218 4.218 24 C -0.117 4.117 25 C -0.128 4.128 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.386 0.614 30 H 0.023 0.977 31 H 0.024 0.976 32 H 0.265 0.735 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.162 0.838 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.210 3.644 -19.665 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 H 0.119 0.881 4 C 0.289 3.711 5 O -0.403 6.403 6 N -0.368 5.368 7 C 0.133 3.867 8 C -0.580 4.580 9 H 0.079 0.921 10 C -0.140 4.140 11 N -0.524 5.524 12 Si 0.729 3.271 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.201 1.201 16 C 0.117 3.883 17 H 0.089 0.911 18 O -0.267 6.267 19 C -0.008 4.008 20 C -0.117 4.117 21 C -0.272 4.272 22 S 0.355 5.645 23 C -0.354 4.354 24 C -0.148 4.148 25 C -0.140 4.140 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.218 0.782 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.180 0.820 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.123 1.968 -19.694 19.906 hybrid contribution -1.443 1.769 1.245 2.600 sum 0.681 3.737 -18.450 18.837 Atomic orbital electron populations 1.21711 0.92567 1.03419 1.02022 1.21491 0.97867 0.99891 0.93473 0.88142 1.20053 0.81458 0.85313 0.84313 1.90674 1.37482 1.25730 1.86420 1.46414 1.52468 1.31357 1.06557 1.18996 0.95000 0.92746 0.79922 1.21212 1.33115 1.12925 0.90704 0.92081 1.24947 0.94929 0.94967 0.99167 1.69971 1.36012 1.22264 1.24146 0.86505 0.79151 0.79594 0.81813 1.20082 1.21110 1.20127 1.20694 0.87944 0.83317 0.96302 0.91078 1.88110 1.69395 1.17614 1.51587 1.22533 0.91724 0.96068 0.90481 1.20920 0.96589 0.91888 1.02348 1.24530 0.95244 0.99310 1.08158 1.83886 1.06555 1.04805 1.69292 1.25268 0.99225 0.99627 1.11240 1.19823 0.93226 0.98973 1.02746 1.20003 0.97304 0.92874 1.03784 0.92126 0.91306 0.91771 0.78153 0.95943 0.95794 0.92492 0.93301 0.88343 0.90306 0.88961 0.82037 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.91 37.16 0.33 -1.41 16 2 C -0.11 -1.55 2.39 -91.77 -0.22 -1.77 16 3 H 0.10 1.25 7.06 -51.93 -0.37 0.89 16 4 C 0.51 10.35 6.74 -10.98 -0.07 10.28 16 5 O -0.53 -12.85 14.08 -15.38 -0.22 -13.06 16 6 N -0.72 -15.61 5.45 -61.47 -0.34 -15.95 16 7 C 0.25 6.95 5.43 -5.19 -0.03 6.92 16 8 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 9 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 10 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 11 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 12 Si 0.90 21.19 29.54 -169.99 -5.02 16.16 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 C 0.18 2.56 2.57 -27.10 -0.07 2.49 16 17 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 18 O -0.35 -5.59 8.54 -56.17 -0.48 -6.07 16 19 C 0.07 0.87 6.83 37.38 0.26 1.12 16 20 C -0.08 -1.03 6.55 -27.31 -0.18 -1.20 16 21 C -0.16 -2.35 6.42 -35.15 -0.23 -2.57 16 22 S 0.09 1.21 23.32 -107.50 -2.51 -1.29 16 23 C -0.22 -2.92 11.21 28.93 0.32 -2.59 16 24 C -0.12 -1.65 9.44 -41.13 -0.39 -2.04 16 25 C -0.13 -1.95 4.06 -104.78 -0.43 -2.37 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.98 8.01 -51.93 -0.42 0.56 16 28 H 0.06 0.75 7.72 -51.93 -0.40 0.35 16 29 H 0.39 7.25 7.84 -40.82 -0.32 6.93 16 30 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.16 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.14 1.62 7.27 -52.49 -0.38 1.23 16 LS Contribution 327.75 15.07 4.94 4.94 Total: -1.00 -34.11 327.75 -9.22 -43.33 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.22 Total: 4.66 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -1.12 Total: -6.78 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.40 Total: -41.89 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.70 Total: -19.13 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.51 Total: -1.29 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.11 -9.22 -43.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351590291.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.739 kcal (2) G-P(sol) polarization free energy of solvation -34.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds