Wall clock time and date at job start Tue Mar 31 2020 07:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47096 * 2 1 4 4 C 1.50701 * 109.46812 * 119.99815 * 2 1 3 5 5 O 1.21282 * 120.00171 * 120.00002 * 4 2 1 6 6 N 1.34779 * 119.99910 * 300.00292 * 4 2 1 7 7 C 1.46500 * 119.99897 * 179.97438 * 6 4 2 8 8 C 1.50700 * 109.47311 * 179.97438 * 7 6 4 9 9 H 1.07996 * 119.99822 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00003 * 179.72133 * 8 7 6 11 11 N 1.31514 * 120.00180 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99780 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47066 * 60.00464 * 12 10 8 14 14 H 1.48501 * 109.47259 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47488 * 300.00776 * 12 10 8 16 16 C 1.52995 * 109.47328 * 239.99804 * 2 1 3 17 17 H 1.08994 * 109.68934 * 54.30408 * 16 2 1 18 18 O 1.43016 * 109.69270 * 293.71968 * 16 2 1 19 19 C 1.43060 * 114.23769 * 188.21276 * 18 16 2 20 20 C 1.53438 * 109.07117 * 71.28170 * 19 18 16 21 21 C 1.51407 * 107.90201 * 312.53115 * 20 19 18 22 22 S 1.75508 * 126.27370 * 195.53320 * 21 20 19 23 23 C 1.75808 * 91.03582 * 179.97438 * 22 21 20 24 24 C 1.33066 * 109.61541 * 0.02562 * 23 22 21 25 25 C 1.34874 * 123.67846 * 15.50466 * 21 20 19 26 26 H 1.09001 * 109.46549 * 65.27853 * 1 2 3 27 27 H 1.08994 * 109.46853 * 185.27450 * 1 2 3 28 28 H 1.08996 * 109.47042 * 305.28092 * 1 2 3 29 29 H 0.96994 * 120.00439 * 359.97438 * 6 4 2 30 30 H 1.09004 * 109.47420 * 59.99890 * 7 6 4 31 31 H 1.09001 * 109.47203 * 299.99965 * 7 6 4 32 32 H 0.96994 * 119.99584 * 179.97438 * 11 10 8 33 33 H 1.08997 * 109.54771 * 311.39863 * 19 18 16 34 34 H 1.09005 * 109.59454 * 191.19269 * 19 18 16 35 35 H 1.08999 * 109.77527 * 192.92847 * 20 19 18 36 36 H 1.09003 * 109.81730 * 72.15270 * 20 19 18 37 37 H 1.07999 * 125.19169 * 179.97438 * 23 22 21 38 38 H 1.07995 * 122.18697 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 2.1944 -0.9408 3.6508 8 6 1.6926 -0.2300 4.8813 9 1 1.0720 0.6483 4.7821 10 6 2.0206 -0.7046 6.1336 11 7 2.7717 -1.7773 6.2543 12 14 1.3980 0.1761 7.6587 13 1 -0.0871 0.1824 7.6551 14 1 1.8874 -0.5277 8.8713 15 1 1.8988 1.5741 7.6623 16 6 2.0401 -0.7213 -1.2492 17 1 1.5979 -0.2724 -2.1386 18 8 1.6900 -2.1063 -1.1826 19 6 2.2774 -2.9105 -2.2097 20 6 3.7809 -3.0517 -1.9376 21 6 4.3299 -1.6742 -1.6319 22 16 6.0221 -1.2088 -1.6255 23 6 5.5996 0.4414 -1.1906 24 6 4.2780 0.5494 -1.0786 25 6 3.5574 -0.6134 -1.3203 26 1 -0.3632 0.4298 -0.9335 27 1 -0.3633 -1.0233 0.0945 28 1 -0.3633 0.5935 0.8389 29 1 1.1492 0.5389 2.5436 30 1 3.2844 -0.9413 3.6511 31 1 1.8306 -1.9683 3.6507 32 1 3.0027 -2.1109 7.1353 33 1 2.1254 -2.4337 -3.1779 34 1 1.8132 -3.8968 -2.2121 35 1 4.2781 -3.4600 -2.8175 36 1 3.9417 -3.7105 -1.0843 37 1 6.3050 1.2446 -1.0370 38 1 3.7970 1.4803 -0.8172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351590291.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:48 Heat of formation + Delta-G solvation = -77.727768 kcal Electronic energy + Delta-G solvation = -22033.828310 eV Core-core repulsion = 18773.765545 eV Total energy + Delta-G solvation = -3260.062765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.36484 -39.70152 -37.38062 -36.02373 -35.11487 -34.18057 -32.77050 -30.01679 -29.07679 -26.81719 -25.37452 -24.92436 -23.28592 -22.71093 -20.94173 -19.55779 -18.74189 -18.30207 -17.88977 -17.05154 -16.89531 -16.28573 -15.98678 -15.75987 -15.55140 -15.50421 -14.59103 -14.49842 -14.28418 -14.12974 -13.96779 -13.64201 -13.30794 -13.00241 -12.92851 -12.87178 -12.74743 -12.66619 -12.44219 -12.22377 -12.00668 -11.90357 -11.50490 -11.46432 -10.77111 -10.54713 -10.34142 -9.68233 -9.44442 -9.20996 -8.27918 -6.44740 0.09077 0.72753 1.07247 1.42267 1.46878 1.54970 1.75143 2.00809 2.34330 2.68415 2.88569 3.06611 3.68909 3.74358 3.85097 4.01182 4.15807 4.22084 4.33253 4.39065 4.41169 4.50035 4.63562 4.75917 4.84889 4.95047 4.97384 5.03894 5.16985 5.20057 5.27719 5.37747 5.43641 5.53751 5.57389 5.78591 5.89369 6.35083 6.67614 7.06756 7.25534 7.68610 8.84253 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019364 B = 0.004289 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.616740 B = 6527.487934 C = 7026.038675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.132 0.868 4 C 0.498 3.502 5 O -0.571 6.571 6 N -0.715 5.715 7 C 0.274 3.726 8 C -0.555 4.555 9 H 0.083 0.917 10 C 0.003 3.997 11 N -0.933 5.933 12 Si 0.985 3.015 13 H -0.261 1.261 14 H -0.286 1.286 15 H -0.261 1.261 16 C 0.173 3.827 17 H 0.109 0.891 18 O -0.381 6.381 19 C 0.067 3.933 20 C -0.079 4.079 21 C -0.183 4.183 22 S 0.082 5.918 23 C -0.221 4.221 24 C -0.133 4.133 25 C -0.141 4.141 26 H 0.099 0.901 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.404 0.596 30 H -0.021 1.021 31 H -0.021 1.021 32 H 0.268 0.732 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.186 0.814 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.356 6.276 -20.499 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 H 0.149 0.851 4 C 0.285 3.715 5 O -0.449 6.449 6 N -0.366 5.366 7 C 0.151 3.849 8 C -0.592 4.592 9 H 0.101 0.899 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.808 3.192 13 H -0.185 1.185 14 H -0.211 1.211 15 H -0.186 1.186 16 C 0.113 3.887 17 H 0.126 0.874 18 O -0.300 6.300 19 C -0.011 4.011 20 C -0.118 4.118 21 C -0.300 4.300 22 S 0.348 5.652 23 C -0.356 4.356 24 C -0.163 4.163 25 C -0.153 4.153 26 H 0.118 0.882 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.239 0.761 30 H -0.003 1.003 31 H -0.003 1.003 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.203 0.797 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.531 4.633 -20.572 21.094 hybrid contribution -0.891 0.889 1.451 1.921 sum -0.360 5.521 -19.121 19.905 Atomic orbital electron populations 1.21726 0.90428 1.02534 1.04534 1.21552 0.99432 1.00485 0.90060 0.85080 1.21197 0.80122 0.84817 0.85341 1.90659 1.39263 1.27881 1.87141 1.46181 1.52977 1.31765 1.05678 1.18370 0.92275 0.91362 0.82860 1.21608 1.33275 1.13520 0.90832 0.89852 1.26092 0.94762 0.95589 1.03231 1.70150 1.37568 1.24298 1.25186 0.85212 0.79053 0.78478 0.76498 1.18540 1.21147 1.18567 1.20952 0.87576 0.82989 0.97167 0.87355 1.88063 1.69916 1.18753 1.53282 1.22747 0.90784 0.96670 0.90876 1.20961 0.97855 0.90783 1.02195 1.24891 0.95871 1.00215 1.09046 1.83832 1.06408 1.05622 1.69382 1.25661 0.99744 0.99774 1.10450 1.20127 0.93559 0.99616 1.03016 1.20347 0.98165 0.93298 1.03539 0.88229 0.93612 0.90934 0.76112 1.00322 1.00276 0.92355 0.90521 0.87106 0.87633 0.92027 0.79692 0.82518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.91 71.98 0.64 -2.30 16 2 C -0.09 -2.55 2.39 -11.54 -0.03 -2.58 16 3 H 0.13 2.77 7.06 -2.39 -0.02 2.76 16 4 C 0.50 20.55 6.74 87.66 0.59 21.14 16 5 O -0.57 -28.97 14.08 16.98 0.24 -28.73 16 6 N -0.71 -31.35 5.45 -466.78 -2.54 -33.89 16 7 C 0.27 15.67 5.43 85.63 0.46 16.14 16 8 C -0.55 -30.96 9.28 25.60 0.24 -30.73 16 9 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 10 C 0.00 0.14 5.46 84.66 0.46 0.61 16 11 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16 12 Si 0.98 43.05 29.54 68.60 2.03 45.07 16 13 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 14 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 15 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 16 C 0.17 4.61 2.57 30.36 0.08 4.68 16 17 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 18 O -0.38 -11.93 8.54 -128.96 -1.10 -13.03 16 19 C 0.07 1.59 6.83 72.13 0.49 2.08 16 20 C -0.08 -2.09 6.55 30.22 0.20 -1.89 16 21 C -0.18 -5.52 6.42 25.14 0.16 -5.36 16 22 S 0.08 2.23 23.32 -56.49 -1.32 0.92 16 23 C -0.22 -5.65 11.21 66.66 0.75 -4.91 16 24 C -0.13 -3.53 9.44 21.27 0.20 -3.33 16 25 C -0.14 -4.14 4.06 -19.96 -0.08 -4.22 16 26 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.04 1.22 8.01 -2.39 -0.02 1.20 16 28 H 0.07 1.46 7.72 -2.39 -0.02 1.44 16 29 H 0.40 14.65 7.84 -92.71 -0.73 13.93 16 30 H -0.02 -1.37 8.14 -2.38 -0.02 -1.39 16 31 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 32 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 33 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 34 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.19 3.64 8.06 -2.91 -0.02 3.62 16 38 H 0.16 3.30 7.27 -2.91 -0.02 3.28 16 Total: -1.00 -78.36 327.75 2.10 -76.26 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.35 Total: 21.67 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 4.17 Total: -10.67 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -2.26 Total: -91.49 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -0.86 Total: -41.76 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -1.32 Total: 0.92 kcal Total: -78.36 2.10 -76.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351590291.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.466 kcal (2) G-P(sol) polarization free energy of solvation -78.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds