Wall clock time and date at job start Tue Mar 31 2020 07:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34693 * 116.99584 * 2 1 4 4 O 1.21437 * 120.00002 * 0.02562 * 3 2 1 5 5 C 1.47937 * 119.99862 * 179.97438 * 3 2 1 6 6 C 1.39683 * 119.98043 * 0.23070 * 5 3 2 7 7 C 1.37713 * 120.06543 * 180.27211 * 6 5 3 8 8 C 1.39636 * 120.03984 * 359.49682 * 7 6 5 9 9 C 1.47894 * 120.01965 * 180.22790 * 8 7 6 10 10 O 1.21538 * 119.99980 * 179.97438 * 9 8 7 11 11 N 1.34775 * 119.99868 * 0.02562 * 9 8 7 12 12 C 1.46497 * 119.99953 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47679 * 34.99850 * 12 11 9 14 14 C 1.53005 * 109.47029 * 274.99893 * 12 11 9 15 15 C 1.50699 * 109.47391 * 155.00292 * 12 11 9 16 16 H 1.07998 * 120.00133 * 34.99624 * 15 12 11 17 17 C 1.37878 * 119.99958 * 215.00731 * 15 12 11 18 18 N 1.31520 * 120.00089 * 184.91278 * 17 15 12 19 19 Si 1.86794 * 120.00102 * 4.90567 * 17 15 12 20 20 H 1.48491 * 109.47352 * 84.83848 * 19 17 15 21 21 H 1.48500 * 109.47316 * 204.83831 * 19 17 15 22 22 H 1.48502 * 109.47340 * 324.83777 * 19 17 15 23 23 C 1.39786 * 119.96390 * 0.25289 * 8 7 6 24 24 F 1.35101 * 120.03263 * 180.02562 * 23 8 7 25 25 C 1.38195 * 119.92840 * 359.97438 * 23 8 7 26 26 H 1.08996 * 109.47182 * 60.00090 * 1 2 3 27 27 H 1.08999 * 109.46821 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46969 * 299.99711 * 1 2 3 29 29 H 1.07996 * 119.97117 * 0.02627 * 6 5 3 30 30 H 1.08002 * 119.97948 * 179.76660 * 7 6 5 31 31 H 0.96997 * 120.00117 * 0.02562 * 11 9 8 32 32 H 1.09004 * 109.47257 * 175.04022 * 14 12 11 33 33 H 1.09005 * 109.47117 * 295.03751 * 14 12 11 34 34 H 1.08995 * 109.46930 * 55.03522 * 14 12 11 35 35 H 0.96992 * 119.99892 * 179.97438 * 18 17 15 36 36 H 1.08005 * 120.01304 * 179.97438 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2186 0.0005 5 6 3.5408 1.2777 0.0006 6 6 4.3012 0.1060 -0.0038 7 6 5.6766 0.1760 0.0024 8 6 6.3132 1.4188 0.0024 9 6 7.7902 1.4936 0.0040 10 8 8.3440 2.5755 0.0035 11 7 8.5222 0.3619 0.0049 12 6 9.9853 0.4359 0.0070 13 1 10.3049 1.2949 0.5969 14 6 10.4903 0.5874 -1.4294 15 6 10.5512 -0.8249 0.6080 16 1 10.0563 -1.7707 0.4441 17 6 11.7008 -0.7709 1.3674 18 7 12.2486 -1.8812 1.8111 19 14 12.4803 0.8792 1.7658 20 1 11.8262 1.4588 2.9663 21 1 13.9287 0.6906 2.0339 22 1 12.3060 1.8001 0.6139 23 6 5.5536 2.5923 0.0015 24 9 6.1681 3.7955 0.0010 25 6 4.1736 2.5204 0.0000 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.8102 -0.8559 -0.0080 30 1 6.2631 -0.7308 0.0029 31 1 8.0803 -0.5016 0.0041 32 1 11.5709 0.7308 -1.4214 33 1 10.2473 -0.3111 -1.9966 34 1 10.0127 1.4503 -1.8933 35 1 13.0575 -1.8432 2.3450 36 1 3.5854 3.4262 -0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355988463.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:31 Heat of formation + Delta-G solvation = -139.242057 kcal Electronic energy + Delta-G solvation = -22914.565230 eV Core-core repulsion = 19085.621830 eV Total energy + Delta-G solvation = -3828.943400 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.85375 -40.92198 -39.66814 -38.14295 -36.77599 -35.02226 -32.71306 -31.93912 -30.96317 -29.64325 -28.13775 -25.44325 -25.15217 -22.98189 -21.98912 -21.03386 -19.77084 -18.74999 -18.07102 -17.49652 -16.74433 -16.53039 -16.28655 -16.16089 -15.70615 -15.19633 -14.91558 -14.30618 -14.19220 -14.05911 -13.77285 -13.48272 -13.21149 -12.67594 -12.58738 -12.52084 -12.43608 -12.32635 -11.69641 -11.54246 -11.19794 -11.16091 -10.97794 -10.87095 -10.64099 -9.93270 -9.49038 -9.42242 -9.27478 -9.03355 -8.76410 -8.22368 -6.29422 -4.34101 0.01720 0.87396 1.96751 2.20772 3.00852 3.23188 3.31601 3.38836 3.62307 3.73113 4.02002 4.24165 4.28046 4.39709 4.65978 4.73921 4.81549 4.83110 4.93546 5.11521 5.17212 5.28952 5.59601 5.72614 5.79833 5.83363 5.94595 6.27035 6.41633 6.45946 6.60922 6.85667 7.09621 7.27448 7.31436 7.43540 8.00953 8.42493 8.68142 8.77375 9.31952 10.81968 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.026003 B = 0.003475 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.557137 B = 8056.065747 C = 8706.890312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.351 6.351 3 C 0.512 3.488 4 O -0.500 6.500 5 C -0.086 4.086 6 C -0.080 4.080 7 C -0.072 4.072 8 C -0.123 4.123 9 C 0.536 3.464 10 O -0.535 6.535 11 N -0.691 5.691 12 C 0.230 3.770 13 H 0.052 0.948 14 C -0.148 4.148 15 C -0.533 4.533 16 H 0.080 0.920 17 C 0.083 3.917 18 N -0.886 5.886 19 Si 0.873 3.127 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.260 1.260 23 C 0.145 3.855 24 F -0.108 7.108 25 C -0.103 4.103 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.393 0.607 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.030 0.970 35 H 0.269 0.731 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.798 1.626 -4.094 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.267 6.267 3 C 0.357 3.643 4 O -0.389 6.389 5 C -0.088 4.088 6 C -0.098 4.098 7 C -0.090 4.090 8 C -0.127 4.127 9 C 0.320 3.680 10 O -0.414 6.414 11 N -0.340 5.340 12 C 0.129 3.871 13 H 0.070 0.930 14 C -0.207 4.207 15 C -0.571 4.571 16 H 0.098 0.902 17 C -0.122 4.122 18 N -0.522 5.522 19 Si 0.700 3.300 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.184 1.184 23 C 0.124 3.876 24 F -0.086 7.086 25 C -0.122 4.122 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.169 0.831 30 H 0.168 0.832 31 H 0.228 0.772 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -20.389 2.627 -3.982 20.940 hybrid contribution 0.145 0.572 0.325 0.674 sum -20.244 3.199 -3.657 20.819 Atomic orbital electron populations 1.23334 0.75517 1.04048 1.02794 1.86541 1.23869 1.32187 1.84134 1.21083 0.88806 0.81638 0.72816 1.90847 1.66657 1.36056 1.45300 1.18878 0.89301 0.94082 1.06511 1.21434 0.93404 0.98321 0.96669 1.21347 0.94435 0.96921 0.96335 1.20783 0.95723 0.93145 1.03097 1.18096 0.85405 0.85734 0.78744 1.90801 1.72319 1.27950 1.50347 1.46644 1.09317 1.06947 1.71111 1.19213 0.75225 0.98693 0.94007 0.92969 1.22224 1.00662 0.99288 0.98529 1.20974 1.10496 0.92969 1.32625 0.90196 1.24932 0.96389 0.96613 0.94281 1.69873 1.20472 1.26954 1.34934 0.86905 0.78539 0.84490 0.80099 1.19760 1.21091 1.18394 1.17420 0.89536 0.80908 0.99701 1.91632 1.82857 1.41276 1.92806 1.21123 0.92424 0.98696 0.99935 0.91665 0.87685 0.91641 0.83129 0.83159 0.77195 0.92691 0.93266 0.95117 0.92127 0.82792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.12 9.80 -40.47 -0.40 -3.51 16 3 C 0.51 5.58 7.90 34.70 0.27 5.85 16 4 O -0.50 -6.54 16.12 -19.22 -0.31 -6.85 16 5 C -0.09 -0.94 5.87 -104.93 -0.62 -1.55 16 6 C -0.08 -0.76 9.60 -39.23 -0.38 -1.13 16 7 C -0.07 -0.80 9.52 -39.25 -0.37 -1.17 16 8 C -0.12 -1.84 5.88 -104.84 -0.62 -2.46 16 9 C 0.54 10.34 7.74 -12.31 -0.10 10.24 16 10 O -0.54 -12.40 14.98 5.33 0.08 -12.32 16 11 N -0.69 -13.36 5.02 -55.87 -0.28 -13.64 16 12 C 0.23 5.33 2.22 -69.08 -0.15 5.18 16 13 H 0.05 1.33 4.73 -51.93 -0.25 1.08 16 14 C -0.15 -3.16 9.47 37.16 0.35 -2.81 16 15 C -0.53 -13.83 9.05 -34.44 -0.31 -14.14 16 16 H 0.08 2.16 8.06 -52.49 -0.42 1.73 16 17 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 18 N -0.89 -25.47 13.96 55.43 0.77 -24.70 16 19 Si 0.87 21.21 26.99 -169.99 -4.59 16.62 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.26 -6.22 6.82 56.52 0.39 -5.84 16 23 C 0.15 2.13 7.28 -39.02 -0.28 1.84 16 24 F -0.11 -1.84 15.53 2.25 0.03 -1.81 16 25 C -0.10 -1.24 9.56 -39.14 -0.37 -1.61 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.15 1.04 7.60 -52.49 -0.40 0.64 16 30 H 0.15 1.38 6.39 -52.49 -0.34 1.04 16 31 H 0.39 6.37 6.61 -40.82 -0.27 6.10 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 36 H 0.15 1.71 7.64 -52.48 -0.40 1.30 16 LS Contribution 321.72 15.07 4.85 4.85 Total: -1.00 -32.76 321.72 -5.20 -37.96 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -3.76 Total: 1.72 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -1.61 Total: 1.69 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.49 Total: -38.34 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.63 Total: -22.68 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.03 Total: -1.81 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.59 Total: 16.62 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.76 -5.20 -37.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355988463.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.282 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds