Wall clock time and date at job start Tue Mar 31 2020 07:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34693 * 116.99584 * 2 1 4 4 O 1.21437 * 120.00002 * 0.02562 * 3 2 1 5 5 C 1.47937 * 119.99862 * 179.97438 * 3 2 1 6 6 C 1.39683 * 119.98043 * 0.23070 * 5 3 2 7 7 C 1.37713 * 120.06543 * 180.27211 * 6 5 3 8 8 C 1.39636 * 120.03984 * 359.49682 * 7 6 5 9 9 C 1.47894 * 120.01965 * 180.22790 * 8 7 6 10 10 O 1.21538 * 119.99980 * 179.97438 * 9 8 7 11 11 N 1.34775 * 119.99868 * 0.02562 * 9 8 7 12 12 C 1.46497 * 119.99953 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47679 * 34.99850 * 12 11 9 14 14 C 1.53005 * 109.47029 * 274.99893 * 12 11 9 15 15 C 1.50699 * 109.47391 * 155.00292 * 12 11 9 16 16 H 1.07998 * 120.00133 * 34.99624 * 15 12 11 17 17 C 1.37878 * 119.99958 * 215.00731 * 15 12 11 18 18 N 1.31520 * 120.00089 * 184.91278 * 17 15 12 19 19 Si 1.86794 * 120.00102 * 4.90567 * 17 15 12 20 20 H 1.48491 * 109.47352 * 84.83848 * 19 17 15 21 21 H 1.48500 * 109.47316 * 204.83831 * 19 17 15 22 22 H 1.48502 * 109.47340 * 324.83777 * 19 17 15 23 23 C 1.39786 * 119.96390 * 0.25289 * 8 7 6 24 24 F 1.35101 * 120.03263 * 180.02562 * 23 8 7 25 25 C 1.38195 * 119.92840 * 359.97438 * 23 8 7 26 26 H 1.08996 * 109.47182 * 60.00090 * 1 2 3 27 27 H 1.08999 * 109.46821 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46969 * 299.99711 * 1 2 3 29 29 H 1.07996 * 119.97117 * 0.02627 * 6 5 3 30 30 H 1.08002 * 119.97948 * 179.76660 * 7 6 5 31 31 H 0.96997 * 120.00117 * 0.02562 * 11 9 8 32 32 H 1.09004 * 109.47257 * 175.04022 * 14 12 11 33 33 H 1.09005 * 109.47117 * 295.03751 * 14 12 11 34 34 H 1.08995 * 109.46930 * 55.03522 * 14 12 11 35 35 H 0.96992 * 119.99892 * 179.97438 * 18 17 15 36 36 H 1.08005 * 120.01304 * 179.97438 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2186 0.0005 5 6 3.5408 1.2777 0.0006 6 6 4.3012 0.1060 -0.0038 7 6 5.6766 0.1760 0.0024 8 6 6.3132 1.4188 0.0024 9 6 7.7902 1.4936 0.0040 10 8 8.3440 2.5755 0.0035 11 7 8.5222 0.3619 0.0049 12 6 9.9853 0.4359 0.0070 13 1 10.3049 1.2949 0.5969 14 6 10.4903 0.5874 -1.4294 15 6 10.5512 -0.8249 0.6080 16 1 10.0563 -1.7707 0.4441 17 6 11.7008 -0.7709 1.3674 18 7 12.2486 -1.8812 1.8111 19 14 12.4803 0.8792 1.7658 20 1 11.8262 1.4588 2.9663 21 1 13.9287 0.6906 2.0339 22 1 12.3060 1.8001 0.6139 23 6 5.5536 2.5923 0.0015 24 9 6.1681 3.7955 0.0010 25 6 4.1736 2.5204 0.0000 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.8102 -0.8559 -0.0080 30 1 6.2631 -0.7308 0.0029 31 1 8.0803 -0.5016 0.0041 32 1 11.5709 0.7308 -1.4214 33 1 10.2473 -0.3111 -1.9966 34 1 10.0127 1.4503 -1.8933 35 1 13.0575 -1.8432 2.3450 36 1 3.5854 3.4262 -0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355988463.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:30 Heat of formation + Delta-G solvation = -160.819926 kcal Electronic energy + Delta-G solvation = -22915.500917 eV Core-core repulsion = 19085.621830 eV Total energy + Delta-G solvation = -3829.879087 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.04269 -41.78045 -40.98670 -39.30427 -37.58134 -36.79932 -34.50864 -33.28850 -31.93113 -31.21888 -28.77643 -27.34112 -26.22735 -24.02886 -23.18348 -22.27775 -21.37530 -19.90652 -19.41692 -18.44196 -18.17223 -17.53448 -17.49029 -17.14109 -16.91077 -16.74379 -16.35017 -15.76830 -15.56161 -15.04431 -14.78041 -14.51532 -14.47196 -14.37682 -14.31387 -13.70838 -13.46113 -13.19551 -13.08004 -13.04465 -12.80623 -12.60036 -12.46668 -11.88964 -11.84739 -11.83661 -11.24711 -11.01760 -10.82973 -10.51653 -10.05769 -9.86190 -8.39499 -6.45434 -0.98381 -0.06586 1.01185 1.28916 1.34696 1.44385 1.46416 1.86616 2.18159 2.26806 2.53041 2.99116 3.01435 3.39257 3.46547 3.71743 3.84088 3.90199 4.31529 4.35762 4.38144 4.45918 4.62436 4.71680 4.77847 4.80101 4.83469 4.88505 4.94924 5.08425 5.19581 5.33624 5.43988 5.45640 5.64460 6.09684 6.52063 6.59147 6.75475 7.17994 7.30912 8.74930 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.026003 B = 0.003475 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.557137 B = 8056.065747 C = 8706.890312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.346 6.346 3 C 0.517 3.483 4 O -0.526 6.526 5 C -0.080 4.080 6 C -0.056 4.056 7 C -0.058 4.058 8 C -0.142 4.142 9 C 0.536 3.464 10 O -0.581 6.581 11 N -0.687 5.687 12 C 0.233 3.767 13 H 0.029 0.971 14 C -0.142 4.142 15 C -0.524 4.524 16 H 0.066 0.934 17 C 0.038 3.962 18 N -0.925 5.925 19 Si 0.920 3.080 20 H -0.276 1.276 21 H -0.277 1.277 22 H -0.258 1.258 23 C 0.124 3.876 24 F -0.130 7.130 25 C -0.097 4.097 26 H 0.065 0.935 27 H 0.137 0.863 28 H 0.064 0.936 29 H 0.189 0.811 30 H 0.174 0.826 31 H 0.409 0.591 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.035 0.965 35 H 0.271 0.729 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.030 0.469 -4.559 23.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.262 6.262 3 C 0.363 3.637 4 O -0.416 6.416 5 C -0.082 4.082 6 C -0.073 4.073 7 C -0.076 4.076 8 C -0.146 4.146 9 C 0.323 3.677 10 O -0.463 6.463 11 N -0.337 5.337 12 C 0.129 3.871 13 H 0.047 0.953 14 C -0.201 4.201 15 C -0.563 4.563 16 H 0.084 0.916 17 C -0.163 4.163 18 N -0.564 5.564 19 Si 0.745 3.255 20 H -0.202 1.202 21 H -0.202 1.202 22 H -0.182 1.182 23 C 0.104 3.896 24 F -0.109 7.109 25 C -0.116 4.116 26 H 0.084 0.916 27 H 0.155 0.845 28 H 0.083 0.917 29 H 0.206 0.794 30 H 0.191 0.809 31 H 0.247 0.753 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -22.653 1.436 -4.456 23.132 hybrid contribution 0.625 0.845 0.442 1.140 sum -22.028 2.281 -4.014 22.507 Atomic orbital electron populations 1.23669 0.73693 1.06235 1.02846 1.86527 1.25563 1.30695 1.83427 1.21004 0.88586 0.81929 0.72227 1.90848 1.67143 1.37090 1.46554 1.19029 0.89780 0.94048 1.05343 1.21776 0.92411 0.99301 0.93856 1.21580 0.95313 0.95984 0.94757 1.20468 0.92864 0.94928 1.06349 1.18614 0.87250 0.84640 0.77209 1.90771 1.73732 1.29498 1.52274 1.46291 1.07953 1.08107 1.71365 1.18969 0.77336 0.96256 0.94505 0.95279 1.22123 1.00286 1.00230 0.97456 1.21150 1.09959 0.93450 1.31709 0.91611 1.25520 0.97229 0.98816 0.94740 1.69953 1.21389 1.28498 1.36532 0.86162 0.78174 0.81518 0.79641 1.20199 1.20244 1.18204 1.17652 0.90452 0.80136 1.01381 1.91569 1.83428 1.42617 1.93257 1.21127 0.91219 0.99794 0.99502 0.91609 0.84454 0.91696 0.79400 0.80910 0.75303 0.93230 0.91764 0.94622 0.91962 0.82255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.44 16 2 O -0.35 -4.86 9.80 -56.03 -0.55 -5.41 16 3 C 0.52 9.82 7.90 70.39 0.56 10.37 16 4 O -0.53 -12.79 16.12 20.04 0.32 -12.46 16 5 C -0.08 -1.52 5.87 -20.07 -0.12 -1.63 16 6 C -0.06 -0.82 9.60 22.49 0.22 -0.61 16 7 C -0.06 -1.10 9.52 22.48 0.21 -0.89 16 8 C -0.14 -4.08 5.88 -20.01 -0.12 -4.20 16 9 C 0.54 20.54 7.74 86.80 0.67 21.21 16 10 O -0.58 -27.42 14.98 -3.84 -0.06 -27.48 16 11 N -0.69 -25.93 5.02 -448.94 -2.25 -28.19 16 12 C 0.23 10.67 2.22 44.25 0.10 10.77 16 13 H 0.03 1.49 4.73 -2.39 -0.01 1.48 16 14 C -0.14 -5.94 9.47 71.98 0.68 -5.26 16 15 C -0.52 -27.10 9.05 25.60 0.23 -26.87 16 16 H 0.07 3.53 8.06 -2.91 -0.02 3.51 16 17 C 0.04 2.08 5.47 84.65 0.46 2.54 16 18 N -0.93 -53.50 13.96 21.45 0.30 -53.21 16 19 Si 0.92 43.93 26.99 68.60 1.85 45.79 16 20 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.26 -12.13 6.82 99.48 0.68 -11.45 16 23 C 0.12 3.60 7.28 22.63 0.16 3.77 16 24 F -0.13 -4.60 15.53 44.97 0.70 -3.90 16 25 C -0.10 -2.23 9.56 22.55 0.22 -2.01 16 26 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.14 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.19 1.48 7.60 -2.91 -0.02 1.46 16 30 H 0.17 2.49 6.39 -2.91 -0.02 2.47 16 31 H 0.41 12.53 6.61 -92.71 -0.61 11.91 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 34 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.16 3.42 7.64 -2.91 -0.02 3.40 16 Total: -1.00 -71.99 321.72 5.28 -66.71 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.49 Total: 9.52 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 4.47 Total: 8.63 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -1.95 Total: -81.39 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -0.28 Total: -45.35 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.70 Total: -3.90 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.85 Total: 45.79 kcal Total: -71.99 5.28 -66.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355988463.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.112 kcal (2) G-P(sol) polarization free energy of solvation -71.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds