Wall clock time and date at job start Tue Mar 31 2020 07:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34687 * 116.99858 * 2 1 4 4 O 1.21440 * 120.00345 * 359.97438 * 3 2 1 5 5 C 1.47937 * 119.99878 * 179.97438 * 3 2 1 6 6 C 1.39680 * 119.98607 * 359.97438 * 5 3 2 7 7 C 1.37711 * 120.07151 * 179.71752 * 6 5 3 8 8 C 1.39637 * 120.03678 * 0.55168 * 7 6 5 9 9 C 1.47897 * 120.01625 * 179.74495 * 8 7 6 10 10 O 1.21541 * 119.99656 * 179.72416 * 9 8 7 11 11 N 1.34770 * 120.00083 * 359.72010 * 9 8 7 12 12 C 1.46500 * 120.00256 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46596 * 325.00243 * 12 11 9 14 14 C 1.53006 * 109.47249 * 84.99846 * 12 11 9 15 15 C 1.50698 * 109.47583 * 205.00282 * 12 11 9 16 16 H 1.08004 * 119.99528 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00356 * 180.02562 * 15 12 11 18 18 N 1.31518 * 119.99554 * 359.97438 * 17 15 12 19 19 Si 1.86790 * 120.00086 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47337 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47146 * 119.99673 * 19 17 15 22 22 H 1.48499 * 109.47460 * 239.99758 * 19 17 15 23 23 C 1.39787 * 119.96544 * 359.46500 * 8 7 6 24 24 F 1.35097 * 120.03353 * 180.27727 * 23 8 7 25 25 C 1.38191 * 119.92725 * 0.25948 * 23 8 7 26 26 H 1.08993 * 109.47466 * 300.00413 * 1 2 3 27 27 H 1.09005 * 109.46799 * 60.00628 * 1 2 3 28 28 H 1.09001 * 109.47457 * 180.02562 * 1 2 3 29 29 H 1.08002 * 119.96070 * 359.97438 * 6 5 3 30 30 H 1.08002 * 119.97955 * 180.28872 * 7 6 5 31 31 H 0.97005 * 120.00370 * 0.02562 * 11 9 8 32 32 H 1.09001 * 109.47002 * 60.00085 * 14 12 11 33 33 H 1.08993 * 109.46955 * 180.02562 * 14 12 11 34 34 H 1.09000 * 109.47050 * 300.00351 * 14 12 11 35 35 H 0.97005 * 119.99198 * 180.02562 * 18 17 15 36 36 H 1.08007 * 120.01589 * 179.97438 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2001 0.0000 4 8 1.4021 2.2186 -0.0005 5 6 3.5408 1.2775 0.0006 6 6 4.3012 0.1059 0.0017 7 6 5.6766 0.1759 -0.0037 8 6 6.3132 1.4187 0.0014 9 6 7.7903 1.4933 0.0014 10 8 8.3440 2.5752 0.0008 11 7 8.5222 0.3617 0.0021 12 6 9.9853 0.4356 0.0026 13 1 10.3059 1.2945 -0.5870 14 6 10.4878 0.5874 1.4398 15 6 10.5523 -0.8253 -0.5972 16 1 9.8890 -1.6041 -0.9437 17 6 11.9177 -0.9852 -0.7026 18 7 12.7253 -0.0371 -0.2801 19 14 12.6204 -2.5484 -1.4454 20 1 11.5097 -3.4519 -1.8395 21 1 13.4300 -2.2071 -2.6426 22 1 13.4801 -3.2293 -0.4441 23 6 5.5537 2.5922 0.0007 24 9 6.1682 3.7953 0.0000 25 6 4.1737 2.5203 0.0003 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 3.8100 -0.8560 0.0025 30 1 6.2631 -0.7310 -0.0076 31 1 8.0802 -0.5019 0.0023 32 1 10.1672 -0.2714 2.0295 33 1 11.5763 0.6429 1.4401 34 1 10.0778 1.4995 1.8736 35 1 13.6859 -0.1495 -0.3546 36 1 3.5854 3.4261 0.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355988464.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:33 Heat of formation + Delta-G solvation = -138.954428 kcal Electronic energy + Delta-G solvation = -22829.330032 eV Core-core repulsion = 19000.399105 eV Total energy + Delta-G solvation = -3828.930928 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.80141 -40.90239 -39.58199 -38.05199 -36.75914 -34.91786 -32.75422 -31.78235 -30.91791 -28.96701 -28.06532 -25.36015 -25.10939 -22.94620 -21.98123 -21.09363 -19.66453 -18.72392 -17.95894 -17.43526 -16.73174 -16.40403 -16.12790 -15.86500 -15.64805 -15.17176 -14.81966 -14.30124 -14.18167 -14.04538 -13.75823 -13.45057 -13.15567 -12.61359 -12.49800 -12.47036 -12.31520 -11.76097 -11.65599 -11.18877 -11.14640 -11.01726 -10.96136 -10.80830 -10.35858 -10.29205 -9.44844 -9.30109 -9.10485 -8.99083 -8.61738 -8.03570 -6.17504 -4.27443 0.05520 0.90549 1.99849 2.22290 3.06207 3.20842 3.28614 3.30880 3.72913 3.81993 4.06549 4.26176 4.31308 4.42937 4.68246 4.74800 4.82036 4.87579 5.06136 5.14497 5.16221 5.31703 5.63492 5.75286 5.82814 5.87260 5.96608 6.44679 6.76715 6.89814 7.07711 7.32345 7.33102 7.46136 7.61936 7.83842 8.08182 8.49952 8.68611 8.94030 9.39966 10.88564 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.023993 B = 0.003317 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.746327 B = 8438.608384 C = 9370.853575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.351 6.351 3 C 0.512 3.488 4 O -0.500 6.500 5 C -0.088 4.088 6 C -0.081 4.081 7 C -0.074 4.074 8 C -0.121 4.121 9 C 0.536 3.464 10 O -0.530 6.530 11 N -0.696 5.696 12 C 0.264 3.736 13 H 0.052 0.948 14 C -0.148 4.148 15 C -0.536 4.536 16 H 0.063 0.937 17 C 0.067 3.933 18 N -0.882 5.882 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.145 3.855 24 F -0.107 7.107 25 C -0.102 4.102 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.389 0.611 32 H 0.028 0.972 33 H 0.092 0.908 34 H 0.016 0.984 35 H 0.265 0.735 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.235 -2.766 1.247 21.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.268 6.268 3 C 0.357 3.643 4 O -0.389 6.389 5 C -0.089 4.089 6 C -0.099 4.099 7 C -0.092 4.092 8 C -0.126 4.126 9 C 0.319 3.681 10 O -0.409 6.409 11 N -0.344 5.344 12 C 0.162 3.838 13 H 0.069 0.931 14 C -0.207 4.207 15 C -0.574 4.574 16 H 0.081 0.919 17 C -0.137 4.137 18 N -0.519 5.519 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C 0.124 3.876 24 F -0.085 7.085 25 C -0.121 4.121 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.123 0.877 29 H 0.168 0.832 30 H 0.167 0.833 31 H 0.223 0.777 32 H 0.047 0.953 33 H 0.111 0.889 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -20.782 -1.619 1.262 20.883 hybrid contribution 0.092 -0.985 -0.361 1.053 sum -20.689 -2.604 0.900 20.872 Atomic orbital electron populations 1.23329 0.75557 1.04014 1.02796 1.86536 1.23840 1.32233 1.84164 1.21089 0.88817 0.81616 0.72802 1.90847 1.66667 1.36041 1.45319 1.18864 0.89251 0.94090 1.06723 1.21417 0.93408 0.98271 0.96786 1.21327 0.94383 0.96918 0.96605 1.20848 0.95963 0.93083 1.02669 1.17995 0.85216 0.85788 0.79063 1.90815 1.72200 1.27867 1.49992 1.46506 1.10118 1.06594 1.71210 1.18845 0.72147 0.98493 0.94267 0.93051 1.22091 1.04504 0.96931 0.97142 1.21220 0.92021 1.02497 1.41674 0.91909 1.24893 0.96799 0.96909 0.95096 1.69916 1.03675 1.32640 1.45678 0.86368 0.79080 0.82629 0.78866 1.19689 1.20843 1.20847 1.17422 0.89511 0.80964 0.99676 1.91635 1.82848 1.41235 1.92782 1.21128 0.92445 0.98674 0.99899 0.91665 0.91653 0.87718 0.83225 0.83304 0.77748 0.95316 0.88949 0.96515 0.92528 0.82803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.15 9.80 -40.46 -0.40 -3.54 16 3 C 0.51 5.65 7.90 34.70 0.27 5.92 16 4 O -0.50 -6.62 16.12 -19.22 -0.31 -6.93 16 5 C -0.09 -0.97 5.87 -104.93 -0.62 -1.59 16 6 C -0.08 -0.78 9.60 -39.24 -0.38 -1.15 16 7 C -0.07 -0.84 9.52 -39.25 -0.37 -1.21 16 8 C -0.12 -1.87 5.88 -104.84 -0.62 -2.48 16 9 C 0.54 10.77 7.74 -12.31 -0.10 10.67 16 10 O -0.53 -12.91 14.98 5.33 0.08 -12.83 16 11 N -0.70 -14.00 5.02 -55.86 -0.28 -14.28 16 12 C 0.26 6.55 2.56 -69.08 -0.18 6.38 16 13 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 14 C -0.15 -3.62 9.26 37.16 0.34 -3.27 16 15 C -0.54 -13.76 8.73 -34.44 -0.30 -14.06 16 16 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 17 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 18 N -0.88 -24.42 11.32 55.43 0.63 -23.79 16 19 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 C 0.14 2.19 7.27 -39.02 -0.28 1.90 16 24 F -0.11 -1.89 15.53 2.25 0.03 -1.85 16 25 C -0.10 -1.27 9.56 -39.14 -0.37 -1.64 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.15 1.04 7.60 -52.49 -0.40 0.65 16 30 H 0.15 1.39 6.39 -52.49 -0.34 1.05 16 31 H 0.39 6.45 6.56 -40.82 -0.27 6.18 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.15 1.75 7.64 -52.48 -0.40 1.35 16 LS Contribution 321.96 15.07 4.85 4.85 Total: -1.00 -32.17 321.96 -5.80 -37.97 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -3.76 Total: 2.88 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -1.62 Total: 2.41 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.35 Total: -38.07 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.63 Total: -23.30 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.03 Total: -1.85 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.17 -5.80 -37.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355988464.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.981 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds