Wall clock time and date at job start Tue Mar 31 2020 07:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34687 * 116.99858 * 2 1 4 4 O 1.21440 * 120.00345 * 359.97438 * 3 2 1 5 5 C 1.47937 * 119.99878 * 179.97438 * 3 2 1 6 6 C 1.39680 * 119.98607 * 359.97438 * 5 3 2 7 7 C 1.37711 * 120.07151 * 179.71752 * 6 5 3 8 8 C 1.39637 * 120.03678 * 0.55168 * 7 6 5 9 9 C 1.47897 * 120.01625 * 179.74495 * 8 7 6 10 10 O 1.21541 * 119.99656 * 179.72416 * 9 8 7 11 11 N 1.34770 * 120.00083 * 359.72010 * 9 8 7 12 12 C 1.46500 * 120.00256 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46596 * 325.00243 * 12 11 9 14 14 C 1.53006 * 109.47249 * 84.99846 * 12 11 9 15 15 C 1.50698 * 109.47583 * 205.00282 * 12 11 9 16 16 H 1.08004 * 119.99528 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00356 * 180.02562 * 15 12 11 18 18 N 1.31518 * 119.99554 * 359.97438 * 17 15 12 19 19 Si 1.86790 * 120.00086 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47337 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47146 * 119.99673 * 19 17 15 22 22 H 1.48499 * 109.47460 * 239.99758 * 19 17 15 23 23 C 1.39787 * 119.96544 * 359.46500 * 8 7 6 24 24 F 1.35097 * 120.03353 * 180.27727 * 23 8 7 25 25 C 1.38191 * 119.92725 * 0.25948 * 23 8 7 26 26 H 1.08993 * 109.47466 * 300.00413 * 1 2 3 27 27 H 1.09005 * 109.46799 * 60.00628 * 1 2 3 28 28 H 1.09001 * 109.47457 * 180.02562 * 1 2 3 29 29 H 1.08002 * 119.96070 * 359.97438 * 6 5 3 30 30 H 1.08002 * 119.97955 * 180.28872 * 7 6 5 31 31 H 0.97005 * 120.00370 * 0.02562 * 11 9 8 32 32 H 1.09001 * 109.47002 * 60.00085 * 14 12 11 33 33 H 1.08993 * 109.46955 * 180.02562 * 14 12 11 34 34 H 1.09000 * 109.47050 * 300.00351 * 14 12 11 35 35 H 0.97005 * 119.99198 * 180.02562 * 18 17 15 36 36 H 1.08007 * 120.01589 * 179.97438 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2001 0.0000 4 8 1.4021 2.2186 -0.0005 5 6 3.5408 1.2775 0.0006 6 6 4.3012 0.1059 0.0017 7 6 5.6766 0.1759 -0.0037 8 6 6.3132 1.4187 0.0014 9 6 7.7903 1.4933 0.0014 10 8 8.3440 2.5752 0.0008 11 7 8.5222 0.3617 0.0021 12 6 9.9853 0.4356 0.0026 13 1 10.3059 1.2945 -0.5870 14 6 10.4878 0.5874 1.4398 15 6 10.5523 -0.8253 -0.5972 16 1 9.8890 -1.6041 -0.9437 17 6 11.9177 -0.9852 -0.7026 18 7 12.7253 -0.0371 -0.2801 19 14 12.6204 -2.5484 -1.4454 20 1 11.5097 -3.4519 -1.8395 21 1 13.4300 -2.2071 -2.6426 22 1 13.4801 -3.2293 -0.4441 23 6 5.5537 2.5922 0.0007 24 9 6.1682 3.7953 0.0000 25 6 4.1737 2.5203 0.0003 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 3.8100 -0.8560 0.0025 30 1 6.2631 -0.7310 -0.0076 31 1 8.0802 -0.5019 0.0023 32 1 10.1672 -0.2714 2.0295 33 1 11.5763 0.6429 1.4401 34 1 10.0778 1.4995 1.8736 35 1 13.6859 -0.1495 -0.3546 36 1 3.5854 3.4261 0.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355988464.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:33 Heat of formation + Delta-G solvation = -159.785167 kcal Electronic energy + Delta-G solvation = -22830.233321 eV Core-core repulsion = 19000.399105 eV Total energy + Delta-G solvation = -3829.834217 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.04024 -41.77294 -40.94552 -39.27696 -37.57541 -36.78862 -34.50401 -33.08544 -31.91021 -30.69530 -28.75445 -27.34907 -26.20774 -24.05093 -23.26188 -22.35875 -21.31994 -19.83343 -19.28646 -18.35935 -17.88193 -17.48840 -17.40015 -17.13671 -16.90006 -16.79439 -16.33365 -15.79240 -15.49958 -15.04890 -14.73232 -14.47315 -14.41178 -14.36020 -13.82474 -13.64672 -13.32855 -13.07490 -12.98702 -12.87675 -12.74458 -12.59525 -12.27933 -12.09963 -11.84050 -11.83113 -11.10874 -10.96054 -10.61128 -10.50252 -10.04449 -9.80742 -8.16942 -6.34849 -0.97435 -0.06180 1.02488 1.46600 1.47382 1.48463 1.60442 1.89254 2.21696 2.48125 2.54667 3.00783 3.14418 3.39943 3.47171 3.73714 3.85029 3.91081 4.32298 4.38136 4.38681 4.61579 4.75126 4.78505 4.83065 4.88249 4.91698 4.95677 5.07472 5.19896 5.39765 5.45117 5.56342 5.66144 5.87084 6.07655 6.52705 6.71439 6.81549 7.28166 7.43422 8.89910 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.023993 B = 0.003317 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.746327 B = 8438.608384 C = 9370.853575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.346 6.346 3 C 0.518 3.482 4 O -0.526 6.526 5 C -0.081 4.081 6 C -0.054 4.054 7 C -0.057 4.057 8 C -0.141 4.141 9 C 0.533 3.467 10 O -0.584 6.584 11 N -0.688 5.688 12 C 0.270 3.730 13 H -0.001 1.001 14 C -0.136 4.136 15 C -0.545 4.545 16 H 0.081 0.919 17 C 0.013 3.987 18 N -0.919 5.919 19 Si 0.975 3.025 20 H -0.254 1.254 21 H -0.287 1.287 22 H -0.280 1.280 23 C 0.122 3.878 24 F -0.132 7.132 25 C -0.097 4.097 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.138 0.862 29 H 0.191 0.809 30 H 0.176 0.824 31 H 0.409 0.591 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.009 0.991 35 H 0.265 0.735 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.827 -6.256 1.007 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.261 6.261 3 C 0.363 3.637 4 O -0.417 6.417 5 C -0.083 4.083 6 C -0.072 4.072 7 C -0.076 4.076 8 C -0.145 4.145 9 C 0.320 3.680 10 O -0.466 6.466 11 N -0.338 5.338 12 C 0.167 3.833 13 H 0.017 0.983 14 C -0.194 4.194 15 C -0.583 4.583 16 H 0.099 0.901 17 C -0.187 4.187 18 N -0.557 5.557 19 Si 0.800 3.200 20 H -0.178 1.178 21 H -0.213 1.213 22 H -0.206 1.206 23 C 0.101 3.899 24 F -0.111 7.111 25 C -0.116 4.116 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.156 0.844 29 H 0.208 0.792 30 H 0.193 0.807 31 H 0.246 0.754 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.029 0.971 35 H 0.074 0.926 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -23.429 -5.159 1.024 24.013 hybrid contribution 0.734 0.088 -0.281 0.791 sum -22.696 -5.071 0.742 23.267 Atomic orbital electron populations 1.23670 0.73697 1.06249 1.02832 1.86520 1.25549 1.30637 1.83432 1.20986 0.88542 0.81942 0.72220 1.90850 1.67149 1.37112 1.46560 1.19030 0.89814 0.94016 1.05396 1.21787 0.92318 0.99312 0.93759 1.21584 0.95328 0.95862 0.94813 1.20491 0.92709 0.95078 1.06239 1.18651 0.87320 0.84691 0.77345 1.90782 1.73863 1.29763 1.52206 1.46157 1.08384 1.07873 1.71344 1.18437 0.74887 0.96525 0.93491 0.98330 1.21921 1.02858 0.97320 0.97347 1.21568 0.92545 1.02746 1.41435 0.90116 1.25836 0.97305 1.00120 0.95460 1.70075 1.03926 1.34820 1.46926 0.85249 0.78504 0.78703 0.77587 1.17797 1.21319 1.20571 1.17695 0.90535 0.80135 1.01505 1.91566 1.83490 1.42731 1.93273 1.21124 0.91095 0.99882 0.99507 0.91669 0.91691 0.84396 0.79168 0.80714 0.75379 0.93507 0.91347 0.97147 0.92570 0.82291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.44 16 2 O -0.35 -4.80 9.80 -55.96 -0.55 -5.34 16 3 C 0.52 9.89 7.90 70.39 0.56 10.45 16 4 O -0.53 -12.93 16.12 20.03 0.32 -12.61 16 5 C -0.08 -1.56 5.87 -20.06 -0.12 -1.67 16 6 C -0.05 -0.80 9.60 22.49 0.22 -0.58 16 7 C -0.06 -1.11 9.52 22.48 0.21 -0.90 16 8 C -0.14 -4.26 5.88 -20.01 -0.12 -4.38 16 9 C 0.53 21.98 7.74 86.80 0.67 22.65 16 10 O -0.58 -30.19 14.98 -3.84 -0.06 -30.25 16 11 N -0.69 -27.62 5.02 -448.93 -2.25 -29.88 16 12 C 0.27 13.75 2.56 44.25 0.11 13.87 16 13 H 0.00 -0.07 7.58 -2.39 -0.02 -0.09 16 14 C -0.14 -6.81 9.26 71.98 0.67 -6.14 16 15 C -0.54 -27.77 8.73 25.60 0.22 -27.55 16 16 H 0.08 3.73 7.74 -2.91 -0.02 3.71 16 17 C 0.01 0.67 5.30 84.65 0.45 1.12 16 18 N -0.92 -52.13 11.32 21.45 0.24 -51.89 16 19 Si 0.98 40.68 29.54 68.60 2.03 42.71 16 20 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 21 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 23 C 0.12 3.72 7.27 22.63 0.16 3.88 16 24 F -0.13 -4.97 15.53 44.97 0.70 -4.27 16 25 C -0.10 -2.31 9.56 22.55 0.22 -2.09 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.19 1.40 7.60 -2.91 -0.02 1.38 16 30 H 0.18 2.46 6.39 -2.91 -0.02 2.44 16 31 H 0.41 12.74 6.56 -92.70 -0.61 12.14 16 32 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 34 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.27 14.21 8.31 -92.70 -0.77 13.44 16 36 H 0.16 3.56 7.64 -2.91 -0.02 3.54 16 Total: -1.00 -73.90 321.96 5.41 -68.49 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.53 Total: 12.95 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 4.45 Total: 10.09 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -2.01 Total: -81.77 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -0.28 Total: -48.20 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.70 Total: -4.27 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -73.90 5.41 -68.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355988464.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.297 kcal (2) G-P(sol) polarization free energy of solvation -73.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds