Wall clock time and date at job start Tue Mar 31 2020 07:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47095 * 2 1 4 4 C 1.50700 * 109.47192 * 239.99999 * 2 1 3 5 5 C 1.38229 * 120.00127 * 206.29620 * 4 2 1 6 6 C 1.38233 * 120.00029 * 179.76636 * 5 4 2 7 7 C 1.38237 * 120.00045 * 0.50898 * 6 5 4 8 8 S 1.76192 * 120.00153 * 179.72585 * 7 6 5 9 9 C 1.81405 * 102.99837 * 270.01848 * 8 7 6 10 10 O 1.42106 * 103.00012 * 156.16751 * 8 7 6 11 11 C 1.38235 * 119.99900 * 359.74308 * 7 6 5 12 12 C 1.38235 * 119.99684 * 26.57097 * 4 2 1 13 13 N 1.46500 * 109.47185 * 119.99845 * 2 1 3 14 14 C 1.46505 * 119.99674 * 53.72487 * 13 2 1 15 15 C 1.34775 * 120.00157 * 233.72207 * 13 2 1 16 16 O 1.21682 * 119.99750 * 0.02562 * 15 13 2 17 17 C 1.46378 * 120.00080 * 180.02562 * 15 13 2 18 18 H 1.08007 * 119.99868 * 0.02562 * 17 15 13 19 19 C 1.40045 * 120.00035 * 179.72343 * 17 15 13 20 20 N 1.30670 * 119.99855 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 119.99901 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47178 * 90.00405 * 21 19 17 23 23 H 1.48501 * 109.46958 * 210.00128 * 21 19 17 24 24 H 1.48495 * 109.47488 * 330.00163 * 21 19 17 25 25 H 1.09006 * 109.46927 * 299.99520 * 1 2 3 26 26 H 1.08992 * 109.47273 * 60.00162 * 1 2 3 27 27 H 1.09002 * 109.46774 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00113 * 359.97438 * 5 4 2 29 29 H 1.08005 * 120.00347 * 180.23338 * 6 5 4 30 30 H 1.08999 * 109.47057 * 60.00189 * 9 8 7 31 31 H 1.09007 * 109.46774 * 179.97438 * 9 8 7 32 32 H 1.08997 * 109.47018 * 300.00077 * 9 8 7 33 33 H 1.08001 * 120.00160 * 179.97438 * 11 7 6 34 34 H 1.07997 * 120.00434 * 0.02562 * 12 4 2 35 35 H 1.09002 * 109.47027 * 264.63746 * 14 13 2 36 36 H 1.09000 * 109.47302 * 24.64338 * 14 13 2 37 37 H 1.09008 * 109.46938 * 144.64283 * 14 13 2 38 38 H 0.97002 * 119.99873 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 3.2746 -1.3166 -1.2198 6 6 3.7333 -1.9724 -2.3469 7 6 2.9543 -2.0129 -3.4881 8 16 3.5420 -2.8426 -4.9271 9 6 4.4232 -1.5333 -5.8216 10 8 2.3448 -3.1669 -5.6205 11 6 1.7142 -1.4022 -3.5005 12 6 1.2533 -0.7509 -2.3716 13 7 2.0184 -0.6906 1.1962 14 6 1.5548 -2.0468 1.4995 15 6 2.8941 -0.0783 2.0175 16 8 3.2788 1.0483 1.7657 17 6 3.3825 -0.7685 3.2124 18 1 3.0413 -1.7687 3.4356 19 6 4.2969 -0.1345 4.0627 20 7 4.7138 1.0735 3.7897 21 14 4.9196 -1.0150 5.5879 22 1 6.1450 -1.7830 5.2505 23 1 5.2352 -0.0171 6.6414 24 1 3.8737 -1.9449 6.0843 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.8854 -1.2808 -0.3298 29 1 4.7023 -2.4493 -2.3374 30 1 5.2318 -1.1493 -5.1998 31 1 4.8367 -1.9391 -6.7450 32 1 3.7309 -0.7251 -6.0574 33 1 1.1057 -1.4335 -4.3922 34 1 0.2848 -0.2731 -2.3815 35 1 0.7166 -1.9973 2.1946 36 1 1.2353 -2.5360 0.5793 37 1 2.3676 -2.6163 1.9505 38 1 5.3469 1.5128 4.3789 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356943939.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:44 Heat of formation + Delta-G solvation = -42.989771 kcal Electronic energy + Delta-G solvation = -21471.824896 eV Core-core repulsion = 18213.268484 eV Total energy + Delta-G solvation = -3258.556412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.50326 -37.54363 -35.75925 -34.72337 -32.52219 -31.88843 -30.70120 -29.18312 -28.70247 -26.28905 -25.82610 -23.56314 -22.32451 -20.93114 -18.89129 -18.08438 -16.68314 -16.62263 -15.75166 -15.33469 -15.10240 -14.87527 -14.56549 -14.38434 -13.92334 -13.69942 -13.39680 -13.09906 -12.86123 -12.77749 -12.37671 -12.23823 -12.05564 -11.78742 -11.58222 -11.45658 -11.28466 -11.17019 -10.97894 -10.77516 -10.66204 -10.32467 -10.21694 -10.13028 -8.92070 -8.86393 -8.72330 -8.35319 -7.65472 -7.34013 -6.25856 -4.71777 1.03885 1.60966 1.90450 2.66595 3.09434 3.17227 3.20183 3.73149 3.95551 4.05712 4.46991 4.49000 5.02102 5.04346 5.06382 5.14124 5.17987 5.49246 5.59800 5.72682 5.75215 5.81698 5.82883 5.91608 6.00880 6.06872 6.24359 6.32451 6.37980 6.47244 6.49212 6.54924 6.62502 6.90078 7.18151 7.38413 7.55821 8.06303 8.28453 8.95921 9.33602 10.49788 10.68445 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022746 B = 0.003838 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.680755 B = 7294.533520 C = 7826.808077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.172 3.828 3 H 0.109 0.891 4 C -0.041 4.041 5 C -0.112 4.112 6 C -0.047 4.047 7 C -0.472 4.472 8 S 1.329 4.671 9 C -0.498 4.498 10 O -0.865 6.865 11 C -0.058 4.058 12 C -0.139 4.139 13 N -0.638 5.638 14 C 0.105 3.895 15 C 0.555 3.445 16 O -0.577 6.577 17 C -0.541 4.541 18 H 0.073 0.927 19 C 0.088 3.912 20 N -0.766 5.766 21 Si 0.906 3.094 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.264 1.264 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.033 0.967 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.042 -8.399 -12.102 14.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.067 3.933 3 H 0.127 0.873 4 C -0.042 4.042 5 C -0.131 4.131 6 C -0.066 4.066 7 C -0.570 4.570 8 S 1.527 4.473 9 C -0.654 4.654 10 O -0.861 6.861 11 C -0.077 4.077 12 C -0.159 4.159 13 N -0.376 5.376 14 C -0.039 4.039 15 C 0.362 3.638 16 O -0.460 6.460 17 C -0.577 4.577 18 H 0.091 0.909 19 C -0.133 4.133 20 N -0.394 5.394 21 Si 0.731 3.269 22 H -0.197 1.197 23 H -0.205 1.205 24 H -0.189 1.189 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.153 0.847 29 H 0.150 0.850 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.158 -8.552 -12.451 15.106 hybrid contribution -1.125 1.419 0.425 1.861 sum -0.967 -7.132 -12.027 14.016 Atomic orbital electron populations 1.22168 0.95670 1.01791 1.01679 1.19608 0.92843 0.97898 0.82965 0.87348 1.20831 0.93831 0.94260 0.95306 1.21314 0.96001 0.96975 0.98790 1.20826 0.98205 0.96119 0.91468 1.27357 1.02462 1.14285 1.12874 1.69309 0.99376 0.93926 0.84719 1.27770 1.10743 1.15858 1.11079 1.93070 1.46221 1.74906 1.71914 1.20963 0.94541 0.94096 0.98120 1.21199 1.00327 1.01284 0.93055 1.48013 1.49166 1.15850 1.24527 1.21319 0.99203 0.84821 0.98595 1.18304 0.77164 0.85579 0.82764 1.90599 1.60298 1.19948 1.75132 1.20993 1.27127 1.02340 1.07287 0.90924 1.25737 0.94905 0.94338 0.98275 1.70017 1.23631 1.11435 1.34356 0.86390 0.79595 0.79724 0.81202 1.19674 1.20470 1.18864 0.91976 0.92395 0.92635 0.84659 0.84985 0.87069 0.87966 0.90169 0.86213 0.85749 0.94876 0.93927 0.91404 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.30 37.16 0.31 -2.11 16 2 C 0.17 3.28 3.02 -69.08 -0.21 3.07 16 3 H 0.11 2.39 6.92 -51.93 -0.36 2.03 16 4 C -0.04 -0.69 4.88 -104.63 -0.51 -1.21 16 5 C -0.11 -1.87 9.15 -39.59 -0.36 -2.24 16 6 C -0.05 -0.61 9.75 -39.58 -0.39 -1.00 16 7 C -0.47 -6.13 5.61 -39.58 -0.22 -6.35 16 8 S 1.33 12.63 14.19 -107.50 -1.53 11.10 16 9 C -0.50 -4.23 10.70 101.05 1.08 -3.15 16 10 O -0.87 -13.60 16.90 -35.23 -0.60 -14.20 16 11 C -0.06 -0.87 9.44 -39.58 -0.37 -1.24 16 12 C -0.14 -2.13 9.14 -39.58 -0.36 -2.49 16 13 N -0.64 -13.73 1.86 -176.92 -0.33 -14.06 16 14 C 0.10 1.90 8.72 59.85 0.52 2.42 16 15 C 0.56 15.02 7.39 -12.99 -0.10 14.92 16 16 O -0.58 -17.88 14.36 5.20 0.07 -17.80 16 17 C -0.54 -14.52 8.73 -35.63 -0.31 -14.83 16 18 H 0.07 1.79 6.11 -52.48 -0.32 1.47 16 19 C 0.09 2.34 5.50 -17.37 -0.10 2.25 16 20 N -0.77 -22.16 11.83 55.55 0.66 -21.50 16 21 Si 0.91 19.37 29.56 -169.99 -5.02 14.35 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 24 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.06 0.77 6.54 -51.93 -0.34 0.43 16 27 H 0.05 0.81 7.35 -51.93 -0.38 0.43 16 28 H 0.14 2.60 7.32 -52.49 -0.38 2.21 16 29 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 30 H 0.11 0.77 8.14 -51.92 -0.42 0.35 16 31 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.12 1.79 7.45 -52.49 -0.39 1.40 16 34 H 0.12 1.68 6.08 -52.49 -0.32 1.36 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.04 0.68 7.29 -51.93 -0.38 0.30 16 37 H 0.07 1.24 6.41 -51.92 -0.33 0.91 16 38 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 LS Contribution 328.90 15.07 4.96 4.96 Total: -1.00 -37.44 328.90 -7.68 -45.12 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.88 Total: 3.98 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -1.02 Total: -11.95 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.33 Total: -35.56 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.52 Total: -32.00 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Atomic # 16 Polarization: 12.63 SS G_CDS: -1.53 Total: 11.10 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -37.44 -7.68 -45.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356943939.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.132 kcal (2) G-P(sol) polarization free energy of solvation -37.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds